EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005009318 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 209483 bases
Position: chrPSZQ01008525.1:885888-1095370
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005013363	EST1	PF10374.9	4e-15	1	1
ENSEASP00005013363	EST1_DNA_bind	PF10373.9	5.2e-60	1	1
ENSEASP00005013363	PIN_4	PF13638.6	1.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005014513	SMG6-201	4820	-	ENSEASP00005013363	1422 (aa)	-	-

Gene Model

Click here to download ENSEASG00005009318's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005009318's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005009318	SMG6	99	93.366	ENSG00000070366	SMG6	100	98.374	Homo_sapiens
ENSEASG00005009318	SMG6	83	54.874	ENSAPOG00000019448	smg6	74	55.564	Acanthochromis_polyacanthus
ENSEASG00005009318	SMG6	99	95.898	ENSAMEG00000007632	SMG6	99	95.898	Ailuropoda_melanoleuca
ENSEASG00005009318	SMG6	71	60.129	ENSACIG00000012997	smg6	78	55.316	Amphilophus_citrinellus
ENSEASG00005009318	SMG6	86	53.253	ENSAOCG00000002630	smg6	74	54.821	Amphiprion_ocellaris
ENSEASG00005009318	SMG6	86	53.480	ENSAPEG00000019101	smg6	74	54.977	Amphiprion_percula
ENSEASG00005009318	SMG6	83	55.808	ENSATEG00000006483	smg6	73	55.504	Anabas_testudineus
ENSEASG00005009318	SMG6	86	57.255	ENSACAG00000011783	SMG6	99	58.130	Anolis_carolinensis
ENSEASG00005009318	SMG6	99	93.790	ENSANAG00000035760	SMG6	99	93.790	Aotus_nancymaae
ENSEASG00005009318	SMG6	71	59.464	ENSACLG00000005288	smg6	79	55.564	Astatotilapia_calliptera
ENSEASG00005009318	SMG6	68	63.296	ENSAMXG00000017326	smg6	98	51.370	Astyanax_mexicanus
ENSEASG00005009318	SMG6	99	94.897	ENSBTAG00000000267	SMG6	99	94.897	Bos_taurus
ENSEASG00005009318	SMG6	99	93.366	ENSCJAG00000001820	SMG6	99	93.366	Callithrix_jacchus
ENSEASG00005009318	SMG6	99	95.748	ENSCAFG00000019260	SMG6	99	95.748	Canis_familiaris
ENSEASG00005009318	SMG6	99	95.748	ENSCAFG00020009770	SMG6	99	95.748	Canis_lupus_dingo
ENSEASG00005009318	SMG6	99	94.472	ENSCHIG00000021998	SMG6	99	94.472	Capra_hircus
ENSEASG00005009318	SMG6	99	93.366	ENSTSYG00000003406	SMG6	99	97.446	Carlito_syrichta
ENSEASG00005009318	SMG6	97	77.401	ENSCAPG00000016197	SMG6	99	82.588	Cavia_aperea
ENSEASG00005009318	SMG6	99	91.114	ENSCPOG00000014878	SMG6	99	91.114	Cavia_porcellus
ENSEASG00005009318	SMG6	99	93.719	ENSCCAG00000035801	SMG6	99	93.719	Cebus_capucinus
ENSEASG00005009318	SMG6	99	93.578	ENSCATG00000031956	SMG6	99	93.578	Cercocebus_atys
ENSEASG00005009318	SMG6	99	93.155	ENSCLAG00000006748	SMG6	99	93.203	Chinchilla_lanigera
ENSEASG00005009318	SMG6	99	94.072	ENSCSAG00000013800	SMG6	99	94.072	Chlorocebus_sabaeus
ENSEASG00005009318	SMG6	51	97.015	ENSCHOG00000005024	-	66	97.015	Choloepus_hoffmanni
ENSEASG00005009318	SMG6	99	73.208	ENSCPBG00000020369	SMG6	99	73.765	Chrysemys_picta_bellii
ENSEASG00005009318	SMG6	97	94.071	ENSCANG00000031764	SMG6	99	97.446	Colobus_angolensis_palliatus
ENSEASG00005009318	SMG6	54	88.575	ENSCGRG00001019595	Smg6	98	88.363	Cricetulus_griseus_chok1gshd
ENSEASG00005009318	SMG6	97	85.611	ENSCGRG00000007782	Smg6	99	85.756	Cricetulus_griseus_crigri
ENSEASG00005009318	SMG6	86	54.314	ENSCSEG00000012757	smg6	81	53.811	Cynoglossus_semilaevis
ENSEASG00005009318	SMG6	71	57.752	ENSCVAG00000012789	smg6	74	54.071	Cyprinodon_variegatus
ENSEASG00005009318	SMG6	98	54.953	ENSDARG00000100481	smg6	90	56.003	Danio_rerio
ENSEASG00005009318	SMG6	99	93.790	ENSDNOG00000048283	SMG6	99	93.790	Dasypus_novemcinctus
ENSEASG00005009318	SMG6	99	89.389	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSEASG00005009318	SMG6	92	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSEASG00005009318	SMG6	73	50.584	ENSEBUG00000005059	smg6	73	48.930	Eptatretus_burgeri
ENSEASG00005009318	SMG6	100	99.719	ENSECAG00000006519	SMG6	100	99.719	Equus_caballus
ENSEASG00005009318	SMG6	99	83.912	ENSEEUG00000003493	SMG6	99	83.912	Erinaceus_europaeus
ENSEASG00005009318	SMG6	71	60.482	ENSELUG00000005934	smg6	69	55.658	Esox_lucius
ENSEASG00005009318	SMG6	99	96.953	ENSFCAG00000028817	SMG6	99	96.953	Felis_catus
ENSEASG00005009318	SMG6	97	73.000	ENSFALG00000006538	SMG6	99	73.071	Ficedula_albicollis
ENSEASG00005009318	SMG6	99	92.802	ENSFDAG00000015106	SMG6	99	92.802	Fukomys_damarensis
ENSEASG00005009318	SMG6	83	52.982	ENSFHEG00000013282	smg6	75	53.261	Fundulus_heteroclitus
ENSEASG00005009318	SMG6	52	68.692	ENSGMOG00000019077	smg6	58	68.692	Gadus_morhua
ENSEASG00005009318	SMG6	99	72.003	ENSGALG00000003108	SMG6	98	72.311	Gallus_gallus
ENSEASG00005009318	SMG6	86	52.719	ENSGAFG00000000379	smg6	76	52.839	Gambusia_affinis
ENSEASG00005009318	SMG6	90	53.829	ENSGACG00000020521	smg6	99	53.619	Gasterosteus_aculeatus
ENSEASG00005009318	SMG6	97	72.877	ENSGAGG00000025617	SMG6	99	73.448	Gopherus_agassizii
ENSEASG00005009318	SMG6	99	94.213	ENSGGOG00000017156	SMG6	99	94.213	Gorilla_gorilla
ENSEASG00005009318	SMG6	71	59.502	ENSHBUG00000021311	smg6	74	55.722	Haplochromis_burtoni
ENSEASG00005009318	SMG6	99	92.530	ENSHGLG00000012882	SMG6	99	92.530	Heterocephalus_glaber_female
ENSEASG00005009318	SMG6	99	92.600	ENSHGLG00100017815	SMG6	99	92.600	Heterocephalus_glaber_male
ENSEASG00005009318	SMG6	76	56.752	ENSHCOG00000008761	smg6	97	54.065	Hippocampus_comes
ENSEASG00005009318	SMG6	83	55.538	ENSIPUG00000012493	smg6	75	54.996	Ictalurus_punctatus
ENSEASG00005009318	SMG6	99	94.284	ENSSTOG00000028127	SMG6	99	94.284	Ictidomys_tridecemlineatus
ENSEASG00005009318	SMG6	78	89.375	ENSJJAG00000015367	Smg6	95	87.424	Jaculus_jaculus
ENSEASG00005009318	SMG6	78	55.483	ENSKMAG00000000279	smg6	75	53.953	Kryptolebias_marmoratus
ENSEASG00005009318	SMG6	55	58.231	ENSLACG00000000806	-	98	58.968	Latimeria_chalumnae
ENSEASG00005009318	SMG6	73	65.323	ENSLOCG00000006448	smg6	86	60.338	Lepisosteus_oculatus
ENSEASG00005009318	SMG6	99	93.578	ENSLAFG00000001261	SMG6	99	93.578	Loxodonta_africana
ENSEASG00005009318	SMG6	99	94.143	ENSMFAG00000003394	SMG6	99	94.143	Macaca_fascicularis
ENSEASG00005009318	SMG6	99	94.072	ENSMMUG00000023161	SMG6	99	94.072	Macaca_mulatta
ENSEASG00005009318	SMG6	99	89.092	ENSMNEG00000044592	SMG6	99	89.092	Macaca_nemestrina
ENSEASG00005009318	SMG6	92	97.547	ENSMLEG00000029353	SMG6	99	97.547	Mandrillus_leucophaeus
ENSEASG00005009318	SMG6	84	55.828	ENSMAMG00000020119	smg6	80	55.412	Mastacembelus_armatus
ENSEASG00005009318	SMG6	71	59.464	ENSMZEG00005024736	smg6	74	55.363	Maylandia_zebra
ENSEASG00005009318	SMG6	73	67.264	ENSMGAG00000005401	-	99	67.264	Meleagris_gallopavo
ENSEASG00005009318	SMG6	99	95.272	ENSMICG00000012913	SMG6	99	95.272	Microcebus_murinus
ENSEASG00005009318	SMG6	99	48.267	ENSMMOG00000010883	smg6	99	49.207	Mola_mola
ENSEASG00005009318	SMG6	99	86.299	ENSMODG00000010622	SMG6	99	86.299	Monodelphis_domestica
ENSEASG00005009318	SMG6	99	91.531	MGP_CAROLIEiJ_G0016729	Smg6	99	91.531	Mus_caroli
ENSEASG00005009318	SMG6	99	91.390	ENSMUSG00000038290	Smg6	99	91.390	Mus_musculus
ENSEASG00005009318	SMG6	99	91.172	MGP_PahariEiJ_G0017866	Smg6	99	91.172	Mus_pahari
ENSEASG00005009318	SMG6	99	91.390	MGP_SPRETEiJ_G0017572	Smg6	99	91.390	Mus_spretus
ENSEASG00005009318	SMG6	99	95.889	ENSMPUG00000013046	SMG6	99	95.889	Mustela_putorius_furo
ENSEASG00005009318	SMG6	99	95.110	ENSMLUG00000005739	SMG6	99	95.110	Myotis_lucifugus
ENSEASG00005009318	SMG6	97	91.317	ENSNGAG00000007287	Smg6	99	91.317	Nannospalax_galili
ENSEASG00005009318	SMG6	71	59.424	ENSNBRG00000009511	smg6	80	54.818	Neolamprologus_brichardi
ENSEASG00005009318	SMG6	97	93.678	ENSNLEG00000017171	SMG6	99	98.035	Nomascus_leucogenys
ENSEASG00005009318	SMG6	97	82.612	ENSMEUG00000015804	SMG6	99	82.612	Notamacropus_eugenii
ENSEASG00005009318	SMG6	62	92.308	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSEASG00005009318	SMG6	99	84.729	ENSODEG00000008038	SMG6	99	84.729	Octodon_degus
ENSEASG00005009318	SMG6	99	50.805	ENSONIG00000005594	smg6	99	51.919	Oreochromis_niloticus
ENSEASG00005009318	SMG6	99	93.446	ENSOCUG00000013018	SMG6	99	93.587	Oryctolagus_cuniculus
ENSEASG00005009318	SMG6	83	54.144	ENSORLG00000003317	smg6	74	54.874	Oryzias_latipes
ENSEASG00005009318	SMG6	83	54.236	ENSORLG00020015343	smg6	74	54.574	Oryzias_latipes_hni
ENSEASG00005009318	SMG6	83	54.186	ENSORLG00015020454	smg6	74	54.917	Oryzias_latipes_hsok
ENSEASG00005009318	SMG6	83	54.101	ENSOMEG00000010838	smg6	75	54.495	Oryzias_melastigma
ENSEASG00005009318	SMG6	99	94.006	ENSOGAG00000004483	SMG6	99	94.006	Otolemur_garnettii
ENSEASG00005009318	SMG6	99	92.862	ENSOARG00000015076	SMG6	99	94.348	Ovis_aries
ENSEASG00005009318	SMG6	99	94.284	ENSPPAG00000043296	SMG6	99	94.284	Pan_paniscus
ENSEASG00005009318	SMG6	99	97.023	ENSPPRG00000014581	SMG6	99	97.023	Panthera_pardus
ENSEASG00005009318	SMG6	97	97.031	ENSPTIG00000008925	SMG6	99	99.214	Panthera_tigris_altaica
ENSEASG00005009318	SMG6	99	94.213	ENSPTRG00000008544	SMG6	99	98.232	Pan_troglodytes
ENSEASG00005009318	SMG6	99	93.931	ENSPANG00000024588	SMG6	99	93.931	Papio_anubis
ENSEASG00005009318	SMG6	88	71.991	ENSPSIG00000006660	SMG6	96	71.991	Pelodiscus_sinensis
ENSEASG00005009318	SMG6	97	60.897	ENSPMGG00000000844	smg6	99	60.897	Periophthalmus_magnuspinnatus
ENSEASG00005009318	SMG6	99	92.731	ENSPEMG00000020707	Smg6	99	92.731	Peromyscus_maniculatus_bairdii
ENSEASG00005009318	SMG6	99	51.436	ENSPFOG00000012035	smg6	99	51.442	Poecilia_formosa
ENSEASG00005009318	SMG6	76	56.395	ENSPLAG00000017660	smg6	74	53.888	Poecilia_latipinna
ENSEASG00005009318	SMG6	76	56.421	ENSPMEG00000000258	smg6	74	54.203	Poecilia_mexicana
ENSEASG00005009318	SMG6	83	54.216	ENSPREG00000010066	smg6	74	54.058	Poecilia_reticulata
ENSEASG00005009318	SMG6	99	88.732	ENSPPYG00000007790	SMG6	99	88.732	Pongo_abelii
ENSEASG00005009318	SMG6	99	88.920	ENSPCAG00000000552	SMG6	99	88.920	Procavia_capensis
ENSEASG00005009318	SMG6	99	94.919	ENSPCOG00000020925	SMG6	99	94.919	Propithecus_coquereli
ENSEASG00005009318	SMG6	85	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSEASG00005009318	SMG6	71	61.782	ENSPNYG00000024151	smg6	79	57.423	Pundamilia_nyererei
ENSEASG00005009318	SMG6	87	51.917	ENSPNAG00000015480	smg6	87	63.243	Pygocentrus_nattereri
ENSEASG00005009318	SMG6	99	91.955	ENSRNOG00000003041	Smg6	96	95.601	Rattus_norvegicus
ENSEASG00005009318	SMG6	99	93.719	ENSRBIG00000024746	SMG6	99	93.719	Rhinopithecus_bieti
ENSEASG00005009318	SMG6	99	93.790	ENSRROG00000030423	SMG6	99	97.053	Rhinopithecus_roxellana
ENSEASG00005009318	SMG6	99	93.719	ENSSBOG00000022518	SMG6	99	92.025	Saimiri_boliviensis_boliviensis
ENSEASG00005009318	SMG6	98	85.100	ENSSHAG00000010045	SMG6	98	85.100	Sarcophilus_harrisii
ENSEASG00005009318	SMG6	71	62.721	ENSSFOG00015005436	smg6	70	57.154	Scleropages_formosus
ENSEASG00005009318	SMG6	83	55.807	ENSSMAG00000019777	smg6	73	55.278	Scophthalmus_maximus
ENSEASG00005009318	SMG6	83	55.442	ENSSDUG00000016412	smg6	74	55.443	Seriola_dumerili
ENSEASG00005009318	SMG6	80	54.663	ENSSLDG00000020747	smg6	79	53.380	Seriola_lalandi_dorsalis
ENSEASG00005009318	SMG6	99	70.407	ENSSPUG00000007152	SMG6	99	70.337	Sphenodon_punctatus
ENSEASG00005009318	SMG6	71	58.937	ENSSPAG00000015633	smg6	74	54.510	Stegastes_partitus
ENSEASG00005009318	SMG6	99	95.467	ENSSSCG00000017826	SMG6	99	95.467	Sus_scrofa
ENSEASG00005009318	SMG6	99	72.963	ENSTGUG00000005836	SMG6	99	73.244	Taeniopygia_guttata
ENSEASG00005009318	SMG6	97	49.831	ENSTRUG00000000358	smg6	95	50.034	Takifugu_rubripes
ENSEASG00005009318	SMG6	99	50.033	ENSTNIG00000016164	smg6	99	50.364	Tetraodon_nigroviridis
ENSEASG00005009318	SMG6	99	89.485	ENSTBEG00000011424	SMG6	99	89.485	Tupaia_belangeri
ENSEASG00005009318	SMG6	90	92.553	ENSTTRG00000001175	SMG6	91	92.553	Tursiops_truncatus
ENSEASG00005009318	SMG6	99	96.181	ENSUAMG00000025152	SMG6	99	96.181	Ursus_americanus
ENSEASG00005009318	SMG6	97	96.449	ENSUMAG00000009306	SMG6	99	96.449	Ursus_maritimus
ENSEASG00005009318	SMG6	84	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSEASG00005009318	SMG6	99	95.535	ENSVVUG00000021727	SMG6	99	95.535	Vulpes_vulpes
ENSEASG00005009318	SMG6	97	59.257	ENSXETG00000023799	SMG6	99	59.187	Xenopus_tropicalis
ENSEASG00005009318	SMG6	83	55.217	ENSXCOG00000009867	smg6	74	54.647	Xiphophorus_couchianus
ENSEASG00005009318	SMG6	83	54.560	ENSXMAG00000010321	smg6	74	54.003	Xiphophorus_maculatus