EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005010774 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Minus strand
Length: 20199 bases
Position: chrPSZQ01006646.1:1248669-1268867
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005015434	CPSF_A	PF03178.15	3.7e-92	1	1
ENSEASP00005015439	CPSF_A	PF03178.15	1.3e-91	1	1
ENSEASP00005015443	CPSF_A	PF03178.15	1.3e-91	1	1
ENSEASP00005015447	CPSF_A	PF03178.15	1.3e-91	1	1
ENSEASP00005015450	CPSF_A	PF03178.15	1.3e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005016806	CPSF1-205	4545	-	ENSEASP00005015450	1514 (aa)	-	-
ENSEAST00005016798	CPSF1-203	5545	-	ENSEASP00005015443	1514 (aa)	-	-
ENSEAST00005016789	CPSF1-201	5349	-	ENSEASP00005015434	1444 (aa)	-	UPI00071A0901
ENSEAST00005016794	CPSF1-202	5545	-	ENSEASP00005015439	1514 (aa)	-	-
ENSEAST00005016803	CPSF1-204	5545	-	ENSEASP00005015447	1514 (aa)	-	-

Gene Model

Click here to download ENSEASG00005010774's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005010774's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005010774	CPSF1	100	97.165	ENSG00000071894	CPSF1	100	97.165	Homo_sapiens
ENSEASG00005010774	CPSF1	100	78.138	ENSAPOG00000019621	cpsf1	100	77.935	Acanthochromis_polyacanthus
ENSEASG00005010774	CPSF1	97	96.855	ENSAMEG00000005557	CPSF1	100	96.855	Ailuropoda_melanoleuca
ENSEASG00005010774	CPSF1	100	78.300	ENSACIG00000006112	cpsf1	100	78.369	Amphilophus_citrinellus
ENSEASG00005010774	CPSF1	100	79.491	ENSAOCG00000007120	cpsf1	100	79.353	Amphiprion_ocellaris
ENSEASG00005010774	CPSF1	100	79.711	ENSAPEG00000005755	cpsf1	100	79.711	Amphiprion_percula
ENSEASG00005010774	CPSF1	100	77.793	ENSATEG00000011097	cpsf1	100	77.995	Anabas_testudineus
ENSEASG00005010774	CPSF1	93	82.244	ENSACAG00000009655	CPSF1	100	82.244	Anolis_carolinensis
ENSEASG00005010774	CPSF1	100	97.024	ENSANAG00000036514	CPSF1	100	97.024	Aotus_nancymaae
ENSEASG00005010774	CPSF1	100	77.471	ENSACLG00000012231	cpsf1	99	78.702	Astatotilapia_calliptera
ENSEASG00005010774	CPSF1	100	74.189	ENSAMXG00000008485	cpsf1	100	74.258	Astyanax_mexicanus
ENSEASG00005010774	CPSF1	100	95.779	ENSBTAG00000008355	CPSF1	100	95.779	Bos_taurus
ENSEASG00005010774	CPSF1	100	31.911	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
ENSEASG00005010774	CPSF1	100	96.955	ENSCJAG00000021421	CPSF1	100	96.955	Callithrix_jacchus
ENSEASG00005010774	CPSF1	97	98.212	ENSCAFG00000001600	CPSF1	100	98.284	Canis_familiaris
ENSEASG00005010774	CPSF1	100	98.407	ENSCAFG00020020821	CPSF1	100	98.407	Canis_lupus_dingo
ENSEASG00005010774	CPSF1	100	92.138	ENSCHIG00000015833	CPSF1	100	92.138	Capra_hircus
ENSEASG00005010774	CPSF1	100	97.509	ENSTSYG00000028560	CPSF1	100	97.509	Carlito_syrichta
ENSEASG00005010774	CPSF1	97	95.777	ENSCAPG00000014921	CPSF1	99	95.968	Cavia_aperea
ENSEASG00005010774	CPSF1	100	95.363	ENSCPOG00000011448	CPSF1	100	95.363	Cavia_porcellus
ENSEASG00005010774	CPSF1	100	97.024	ENSCCAG00000037658	CPSF1	100	97.024	Cebus_capucinus
ENSEASG00005010774	CPSF1	100	96.886	ENSCATG00000037234	CPSF1	100	96.886	Cercocebus_atys
ENSEASG00005010774	CPSF1	100	97.230	ENSCLAG00000012166	CPSF1	100	97.230	Chinchilla_lanigera
ENSEASG00005010774	CPSF1	100	96.955	ENSCSAG00000008502	CPSF1	100	96.955	Chlorocebus_sabaeus
ENSEASG00005010774	CPSF1	99	87.841	ENSCPBG00000018910	CPSF1	96	87.841	Chrysemys_picta_bellii
ENSEASG00005010774	CPSF1	96	48.108	ENSCING00000000514	-	100	48.037	Ciona_intestinalis
ENSEASG00005010774	CPSF1	99	48.047	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSEASG00005010774	CPSF1	99	91.760	ENSCANG00000032760	CPSF1	99	91.760	Colobus_angolensis_palliatus
ENSEASG00005010774	CPSF1	100	96.607	ENSCGRG00001016344	Cpsf1	100	96.607	Cricetulus_griseus_chok1gshd
ENSEASG00005010774	CPSF1	100	94.460	ENSCGRG00000003118	Cpsf1	100	94.460	Cricetulus_griseus_crigri
ENSEASG00005010774	CPSF1	100	77.816	ENSCSEG00000013464	cpsf1	100	77.747	Cynoglossus_semilaevis
ENSEASG00005010774	CPSF1	85	77.221	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSEASG00005010774	CPSF1	100	79.574	ENSDARG00000034178	cpsf1	100	79.711	Danio_rerio
ENSEASG00005010774	CPSF1	68	97.101	ENSDNOG00000043654	CPSF1	94	97.101	Dasypus_novemcinctus
ENSEASG00005010774	CPSF1	97	96.557	ENSDORG00000006278	Cpsf1	99	96.756	Dipodomys_ordii
ENSEASG00005010774	CPSF1	100	45.155	FBgn0024698	Cpsf160	100	45.265	Drosophila_melanogaster
ENSEASG00005010774	CPSF1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
ENSEASG00005010774	CPSF1	100	99.861	ENSECAG00000022209	CPSF1	100	99.861	Equus_caballus
ENSEASG00005010774	CPSF1	100	95.986	ENSEEUG00000000471	CPSF1	100	95.986	Erinaceus_europaeus
ENSEASG00005010774	CPSF1	100	78.249	ENSELUG00000012271	cpsf1	100	78.796	Esox_lucius
ENSEASG00005010774	CPSF1	100	97.091	ENSFDAG00000016060	CPSF1	100	97.091	Fukomys_damarensis
ENSEASG00005010774	CPSF1	100	77.166	ENSFHEG00000016801	cpsf1	100	77.029	Fundulus_heteroclitus
ENSEASG00005010774	CPSF1	100	78.114	ENSGMOG00000000796	cpsf1	100	78.252	Gadus_morhua
ENSEASG00005010774	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSEASG00005010774	CPSF1	100	78.709	ENSGACG00000008703	cpsf1	100	78.562	Gasterosteus_aculeatus
ENSEASG00005010774	CPSF1	100	84.323	ENSGAGG00000004276	CPSF1	98	88.077	Gopherus_agassizii
ENSEASG00005010774	CPSF1	100	97.299	ENSGGOG00000016185	CPSF1	100	97.299	Gorilla_gorilla
ENSEASG00005010774	CPSF1	100	79.682	ENSHBUG00000018900	cpsf1	100	79.613	Haplochromis_burtoni
ENSEASG00005010774	CPSF1	100	97.091	ENSHGLG00000016139	CPSF1	100	97.091	Heterocephalus_glaber_female
ENSEASG00005010774	CPSF1	100	97.022	ENSHGLG00100009750	CPSF1	100	97.022	Heterocephalus_glaber_male
ENSEASG00005010774	CPSF1	100	76.980	ENSHCOG00000018509	cpsf1	100	77.100	Hippocampus_comes
ENSEASG00005010774	CPSF1	100	76.527	ENSIPUG00000011259	cpsf1	100	76.527	Ictalurus_punctatus
ENSEASG00005010774	CPSF1	97	96.790	ENSSTOG00000009957	CPSF1	99	96.790	Ictidomys_tridecemlineatus
ENSEASG00005010774	CPSF1	100	96.537	ENSJJAG00000023002	Cpsf1	100	96.537	Jaculus_jaculus
ENSEASG00005010774	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSEASG00005010774	CPSF1	100	77.432	ENSLBEG00000003601	cpsf1	100	77.688	Labrus_bergylta
ENSEASG00005010774	CPSF1	88	81.851	ENSLACG00000000233	CPSF1	100	69.067	Latimeria_chalumnae
ENSEASG00005010774	CPSF1	100	78.360	ENSLOCG00000008484	cpsf1	100	78.498	Lepisosteus_oculatus
ENSEASG00005010774	CPSF1	97	96.492	ENSLAFG00000022601	CPSF1	100	96.492	Loxodonta_africana
ENSEASG00005010774	CPSF1	100	96.886	ENSMFAG00000037013	CPSF1	100	96.886	Macaca_fascicularis
ENSEASG00005010774	CPSF1	100	96.955	ENSMMUG00000007380	CPSF1	100	96.955	Macaca_mulatta
ENSEASG00005010774	CPSF1	97	96.994	ENSMNEG00000043564	CPSF1	100	96.994	Macaca_nemestrina
ENSEASG00005010774	CPSF1	100	97.024	ENSMLEG00000043010	CPSF1	100	97.024	Mandrillus_leucophaeus
ENSEASG00005010774	CPSF1	100	77.935	ENSMAMG00000003803	cpsf1	100	78.408	Mastacembelus_armatus
ENSEASG00005010774	CPSF1	100	77.609	ENSMZEG00005001168	cpsf1	100	77.540	Maylandia_zebra
ENSEASG00005010774	CPSF1	100	96.537	ENSMAUG00000003601	Cpsf1	100	96.537	Mesocricetus_auratus
ENSEASG00005010774	CPSF1	100	97.715	ENSMICG00000015767	CPSF1	100	97.715	Microcebus_murinus
ENSEASG00005010774	CPSF1	100	96.676	ENSMOCG00000022758	Cpsf1	100	96.676	Microtus_ochrogaster
ENSEASG00005010774	CPSF1	100	79.006	ENSMMOG00000021245	cpsf1	100	78.867	Mola_mola
ENSEASG00005010774	CPSF1	100	94.065	ENSMODG00000010755	CPSF1	100	94.065	Monodelphis_domestica
ENSEASG00005010774	CPSF1	100	77.838	ENSMALG00000020545	cpsf1	100	77.770	Monopterus_albus
ENSEASG00005010774	CPSF1	100	97.161	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.161	Mus_caroli
ENSEASG00005010774	CPSF1	100	97.091	ENSMUSG00000034022	Cpsf1	100	97.091	Mus_musculus
ENSEASG00005010774	CPSF1	100	96.884	MGP_PahariEiJ_G0019946	Cpsf1	100	96.884	Mus_pahari
ENSEASG00005010774	CPSF1	100	97.091	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.091	Mus_spretus
ENSEASG00005010774	CPSF1	93	97.554	ENSMPUG00000006419	CPSF1	93	97.554	Mustela_putorius_furo
ENSEASG00005010774	CPSF1	100	96.676	ENSNGAG00000022460	Cpsf1	100	96.676	Nannospalax_galili
ENSEASG00005010774	CPSF1	100	75.000	ENSNBRG00000000813	cpsf1	100	75.069	Neolamprologus_brichardi
ENSEASG00005010774	CPSF1	86	85.211	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSEASG00005010774	CPSF1	82	98.837	ENSMEUG00000014922	CPSF1	85	98.837	Notamacropus_eugenii
ENSEASG00005010774	CPSF1	60	97.449	ENSOPRG00000004693	-	71	97.449	Ochotona_princeps
ENSEASG00005010774	CPSF1	100	97.368	ENSODEG00000013995	CPSF1	100	97.368	Octodon_degus
ENSEASG00005010774	CPSF1	100	80.028	ENSONIG00000007676	cpsf1	100	79.889	Oreochromis_niloticus
ENSEASG00005010774	CPSF1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSEASG00005010774	CPSF1	100	77.868	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSEASG00005010774	CPSF1	100	78.004	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSEASG00005010774	CPSF1	100	78.019	ENSORLG00015009979	cpsf1	100	77.883	Oryzias_latipes_hsok
ENSEASG00005010774	CPSF1	100	77.770	ENSOMEG00000011849	cpsf1	100	77.702	Oryzias_melastigma
ENSEASG00005010774	CPSF1	100	97.163	ENSOGAG00000000315	CPSF1	100	97.163	Otolemur_garnettii
ENSEASG00005010774	CPSF1	100	97.301	ENSPPAG00000019280	CPSF1	100	97.301	Pan_paniscus
ENSEASG00005010774	CPSF1	100	95.646	ENSPTRG00000051253	-	100	95.646	Pan_troglodytes
ENSEASG00005010774	CPSF1	100	97.301	ENSPTRG00000049288	-	100	97.301	Pan_troglodytes
ENSEASG00005010774	CPSF1	97	96.850	ENSPANG00000015005	CPSF1	100	96.850	Papio_anubis
ENSEASG00005010774	CPSF1	100	80.525	ENSPKIG00000002582	cpsf1	100	81.184	Paramormyrops_kingsleyae
ENSEASG00005010774	CPSF1	100	93.996	ENSPCIG00000009035	CPSF1	100	93.996	Phascolarctos_cinereus
ENSEASG00005010774	CPSF1	100	76.554	ENSPFOG00000012870	cpsf1	100	76.622	Poecilia_formosa
ENSEASG00005010774	CPSF1	100	76.502	ENSPREG00000016307	cpsf1	100	76.367	Poecilia_reticulata
ENSEASG00005010774	CPSF1	100	88.927	ENSPPYG00000018973	CPSF1	100	88.927	Pongo_abelii
ENSEASG00005010774	CPSF1	91	95.455	ENSPCAG00000011541	CPSF1	94	95.455	Procavia_capensis
ENSEASG00005010774	CPSF1	100	93.495	ENSPCOG00000020001	CPSF1	100	93.495	Propithecus_coquereli
ENSEASG00005010774	CPSF1	91	99.429	ENSPVAG00000006761	CPSF1	91	99.429	Pteropus_vampyrus
ENSEASG00005010774	CPSF1	100	78.649	ENSPNYG00000004906	cpsf1	100	78.581	Pundamilia_nyererei
ENSEASG00005010774	CPSF1	100	75.379	ENSPNAG00000024395	cpsf1	100	75.379	Pygocentrus_nattereri
ENSEASG00005010774	CPSF1	100	97.091	ENSRNOG00000030705	Cpsf1	100	97.091	Rattus_norvegicus
ENSEASG00005010774	CPSF1	100	96.955	ENSRBIG00000044907	CPSF1	100	96.955	Rhinopithecus_bieti
ENSEASG00005010774	CPSF1	100	96.886	ENSRROG00000044861	CPSF1	100	96.886	Rhinopithecus_roxellana
ENSEASG00005010774	CPSF1	97	96.994	ENSSBOG00000027177	CPSF1	100	96.994	Saimiri_boliviensis_boliviensis
ENSEASG00005010774	CPSF1	100	93.996	ENSSHAG00000006500	CPSF1	100	93.996	Sarcophilus_harrisii
ENSEASG00005010774	CPSF1	100	78.473	ENSSFOG00015004606	cpsf1	100	81.223	Scleropages_formosus
ENSEASG00005010774	CPSF1	100	78.243	ENSSMAG00000020547	cpsf1	100	78.243	Scophthalmus_maximus
ENSEASG00005010774	CPSF1	100	79.089	ENSSDUG00000001100	cpsf1	100	79.158	Seriola_dumerili
ENSEASG00005010774	CPSF1	100	79.351	ENSSLDG00000003619	cpsf1	100	79.282	Seriola_lalandi_dorsalis
ENSEASG00005010774	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSEASG00005010774	CPSF1	96	88.150	ENSSPUG00000014396	CPSF1	99	88.150	Sphenodon_punctatus
ENSEASG00005010774	CPSF1	100	78.055	ENSSPAG00000005349	cpsf1	100	78.190	Stegastes_partitus
ENSEASG00005010774	CPSF1	100	97.368	ENSSSCG00000005906	CPSF1	100	97.368	Sus_scrofa
ENSEASG00005010774	CPSF1	96	78.401	ENSTRUG00000013134	cpsf1	99	78.331	Takifugu_rubripes
ENSEASG00005010774	CPSF1	100	78.944	ENSTNIG00000014027	cpsf1	100	78.738	Tetraodon_nigroviridis
ENSEASG00005010774	CPSF1	77	89.365	ENSTBEG00000001756	CPSF1	89	94.518	Tupaia_belangeri
ENSEASG00005010774	CPSF1	90	97.927	ENSTTRG00000001937	CPSF1	90	97.927	Tursiops_truncatus
ENSEASG00005010774	CPSF1	97	98.569	ENSUAMG00000006476	CPSF1	98	98.569	Ursus_americanus
ENSEASG00005010774	CPSF1	100	77.555	ENSXCOG00000003608	cpsf1	100	77.555	Xiphophorus_couchianus
ENSEASG00005010774	CPSF1	100	77.103	ENSXMAG00000005798	cpsf1	100	77.103	Xiphophorus_maculatus