EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005010966 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 21414 bases
Position: chrPSZQ01008317.1:4834598-4856011
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005015769	CMS1	PF14617.6	2.9e-31	1	1
ENSEASP00005015768	CMS1	PF14617.6	6.2e-31	1	1
ENSEASP00005015766	CMS1	PF14617.6	9.7e-31	1	1
ENSEASP00005015769	DEAD	PF00270.29	3.4e-06	1	1
ENSEASP00005015768	DEAD	PF00270.29	4.8e-06	1	1
ENSEASP00005015766	DEAD	PF00270.29	5.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005017149	CMSS1-203	663	-	ENSEASP00005015769	220 (aa)	-	-
ENSEAST00005017148	CMSS1-202	792	-	ENSEASP00005015768	263 (aa)	-	-
ENSEAST00005017146	CMSS1-201	852	-	ENSEASP00005015766	283 (aa)	-	-

Gene Model

Click here to download ENSEASG00005010966's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005010966's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005010966	CMSS1	99	91.781	ENSG00000184220	CMSS1	99	93.827	Homo_sapiens
ENSEASG00005010966	CMSS1	92	63.366	ENSAPOG00000010604	cmss1	96	57.203	Acanthochromis_polyacanthus
ENSEASG00005010966	CMSS1	99	92.273	ENSAMEG00000004092	CMSS1	100	83.846	Ailuropoda_melanoleuca
ENSEASG00005010966	CMSS1	92	52.970	ENSACIG00000021854	cmss1	74	52.500	Amphilophus_citrinellus
ENSEASG00005010966	CMSS1	92	63.366	ENSAOCG00000013361	cmss1	69	63.000	Amphiprion_ocellaris
ENSEASG00005010966	CMSS1	92	63.366	ENSAPEG00000005829	cmss1	69	63.000	Amphiprion_percula
ENSEASG00005010966	CMSS1	94	63.592	ENSATEG00000008209	cmss1	94	52.768	Anabas_testudineus
ENSEASG00005010966	CMSS1	99	68.950	ENSAPLG00000010542	CMSS1	100	69.130	Anas_platyrhynchos
ENSEASG00005010966	CMSS1	92	70.792	ENSACAG00000011065	CMSS1	85	66.953	Anolis_carolinensis
ENSEASG00005010966	CMSS1	99	91.324	ENSANAG00000023565	CMSS1	99	83.142	Aotus_nancymaae
ENSEASG00005010966	CMSS1	92	60.396	ENSACLG00000027294	cmss1	69	60.000	Astatotilapia_calliptera
ENSEASG00005010966	CMSS1	91	55.500	ENSAMXG00000002046	cmss1	68	55.500	Astyanax_mexicanus
ENSEASG00005010966	CMSS1	99	90.411	ENSBTAG00000013663	CMSS1	99	79.562	Bos_taurus
ENSEASG00005010966	CMSS1	92	93.069	ENSCJAG00000000610	CMSS1	90	88.983	Callithrix_jacchus
ENSEASG00005010966	CMSS1	99	93.151	ENSCAFG00000009230	CMSS1	100	79.856	Canis_familiaris
ENSEASG00005010966	CMSS1	99	93.151	ENSCAFG00020009464	-	94	85.214	Canis_lupus_dingo
ENSEASG00005010966	CMSS1	93	92.647	ENSCAFG00020024156	-	64	92.647	Canis_lupus_dingo
ENSEASG00005010966	CMSS1	99	89.954	ENSCHIG00000013003	CMSS1	100	78.058	Capra_hircus
ENSEASG00005010966	CMSS1	99	89.498	ENSTSYG00000009266	CMSS1	88	89.912	Carlito_syrichta
ENSEASG00005010966	CMSS1	99	71.111	ENSCAPG00000013584	CMSS1	100	72.052	Cavia_aperea
ENSEASG00005010966	CMSS1	99	89.954	ENSCPOG00000014680	CMSS1	95	80.224	Cavia_porcellus
ENSEASG00005010966	CMSS1	99	91.781	ENSCCAG00000034685	CMSS1	99	83.525	Cebus_capucinus
ENSEASG00005010966	CMSS1	99	92.694	ENSCATG00000031980	CMSS1	99	83.846	Cercocebus_atys
ENSEASG00005010966	CMSS1	99	92.237	ENSCLAG00000011241	CMSS1	98	92.544	Chinchilla_lanigera
ENSEASG00005010966	CMSS1	99	92.694	ENSCSAG00000006024	CMSS1	93	92.982	Chlorocebus_sabaeus
ENSEASG00005010966	CMSS1	99	69.406	ENSCHOG00000012098	CMSS1	94	63.707	Choloepus_hoffmanni
ENSEASG00005010966	CMSS1	89	38.000	ENSCING00000014848	-	100	39.037	Ciona_intestinalis
ENSEASG00005010966	CMSS1	57	38.095	ENSCSAVG00000002309	-	99	38.095	Ciona_savignyi
ENSEASG00005010966	CMSS1	99	92.237	ENSCANG00000031337	CMSS1	100	82.759	Colobus_angolensis_palliatus
ENSEASG00005010966	CMSS1	92	85.644	ENSCGRG00001014305	Cmss1	84	81.545	Cricetulus_griseus_chok1gshd
ENSEASG00005010966	CMSS1	99	83.562	ENSCGRG00000006722	Cmss1	91	81.974	Cricetulus_griseus_crigri
ENSEASG00005010966	CMSS1	92	61.881	ENSCSEG00000004958	cmss1	68	61.500	Cynoglossus_semilaevis
ENSEASG00005010966	CMSS1	92	60.396	ENSCVAG00000005039	cmss1	69	60.500	Cyprinodon_variegatus
ENSEASG00005010966	CMSS1	92	54.950	ENSDARG00000112579	cmss1	80	51.915	Danio_rerio
ENSEASG00005010966	CMSS1	99	89.498	ENSDNOG00000040418	CMSS1	87	86.250	Dasypus_novemcinctus
ENSEASG00005010966	CMSS1	99	91.781	ENSDORG00000010461	Cmss1	96	81.041	Dipodomys_ordii
ENSEASG00005010966	CMSS1	60	50.000	ENSEBUG00000002156	-	96	50.000	Eptatretus_burgeri
ENSEASG00005010966	CMSS1	99	98.174	ENSECAG00000015662	CMSS1	99	98.230	Equus_caballus
ENSEASG00005010966	CMSS1	91	60.500	ENSEEUG00000007624	-	82	60.088	Erinaceus_europaeus
ENSEASG00005010966	CMSS1	92	61.881	ENSELUG00000019459	cmss1	82	55.918	Esox_lucius
ENSEASG00005010966	CMSS1	99	94.977	ENSFCAG00000044577	CMSS1	82	94.737	Felis_catus
ENSEASG00005010966	CMSS1	99	64.840	ENSFALG00000005816	CMSS1	98	64.655	Ficedula_albicollis
ENSEASG00005010966	CMSS1	99	90.411	ENSFDAG00000012577	CMSS1	100	90.351	Fukomys_damarensis
ENSEASG00005010966	CMSS1	92	62.871	ENSFHEG00000012008	cmss1	95	60.173	Fundulus_heteroclitus
ENSEASG00005010966	CMSS1	100	59.375	ENSGMOG00000016729	cmss1	72	61.000	Gadus_morhua
ENSEASG00005010966	CMSS1	99	68.950	ENSGALG00000015267	CMSS1	96	63.953	Gallus_gallus
ENSEASG00005010966	CMSS1	94	62.802	ENSGAFG00000021217	cmss1	76	62.500	Gambusia_affinis
ENSEASG00005010966	CMSS1	92	55.446	ENSGACG00000002798	cmss1	72	55.000	Gasterosteus_aculeatus
ENSEASG00005010966	CMSS1	99	69.863	ENSGAGG00000019861	CMSS1	99	64.231	Gopherus_agassizii
ENSEASG00005010966	CMSS1	99	92.694	ENSGGOG00000014125	CMSS1	99	83.846	Gorilla_gorilla
ENSEASG00005010966	CMSS1	92	60.396	ENSHBUG00000008431	cmss1	71	60.000	Haplochromis_burtoni
ENSEASG00005010966	CMSS1	99	91.781	ENSHGLG00000019481	CMSS1	93	92.070	Heterocephalus_glaber_female
ENSEASG00005010966	CMSS1	99	91.781	ENSHGLG00100010314	CMSS1	91	92.070	Heterocephalus_glaber_male
ENSEASG00005010966	CMSS1	99	63.470	ENSHCOG00000003222	cmss1	74	63.470	Hippocampus_comes
ENSEASG00005010966	CMSS1	99	55.251	ENSIPUG00000011591	cmss1	76	55.251	Ictalurus_punctatus
ENSEASG00005010966	CMSS1	99	93.151	ENSSTOG00000019366	CMSS1	96	81.343	Ictidomys_tridecemlineatus
ENSEASG00005010966	CMSS1	99	87.671	ENSJJAG00000014894	Cmss1	89	89.500	Jaculus_jaculus
ENSEASG00005010966	CMSS1	92	52.970	ENSKMAG00000002390	cmss1	80	52.500	Kryptolebias_marmoratus
ENSEASG00005010966	CMSS1	92	57.143	ENSLBEG00000006298	cmss1	82	56.716	Labrus_bergylta
ENSEASG00005010966	CMSS1	99	63.927	ENSLACG00000009293	CMSS1	100	63.478	Latimeria_chalumnae
ENSEASG00005010966	CMSS1	92	58.911	ENSLOCG00000009391	cmss1	81	56.522	Lepisosteus_oculatus
ENSEASG00005010966	CMSS1	99	89.498	ENSLAFG00000017509	CMSS1	100	89.474	Loxodonta_africana
ENSEASG00005010966	CMSS1	99	93.151	ENSMFAG00000045006	CMSS1	99	84.231	Macaca_fascicularis
ENSEASG00005010966	CMSS1	99	92.694	ENSMMUG00000002939	CMSS1	97	93.119	Macaca_mulatta
ENSEASG00005010966	CMSS1	99	92.694	ENSMNEG00000031315	CMSS1	99	83.846	Macaca_nemestrina
ENSEASG00005010966	CMSS1	99	92.237	ENSMLEG00000033660	CMSS1	99	83.462	Mandrillus_leucophaeus
ENSEASG00005010966	CMSS1	92	61.881	ENSMAMG00000017176	cmss1	80	56.652	Mastacembelus_armatus
ENSEASG00005010966	CMSS1	92	60.396	ENSMZEG00005021886	cmss1	69	60.000	Maylandia_zebra
ENSEASG00005010966	CMSS1	92	70.297	ENSMGAG00000014360	CMSS1	100	68.421	Meleagris_gallopavo
ENSEASG00005010966	CMSS1	99	55.251	ENSMAUG00000020609	Cmss1	96	51.673	Mesocricetus_auratus
ENSEASG00005010966	CMSS1	99	93.607	ENSMICG00000048977	CMSS1	88	94.298	Microcebus_murinus
ENSEASG00005010966	CMSS1	99	83.562	ENSMOCG00000021937	Cmss1	96	74.349	Microtus_ochrogaster
ENSEASG00005010966	CMSS1	92	60.891	ENSMMOG00000019794	cmss1	83	60.500	Mola_mola
ENSEASG00005010966	CMSS1	99	78.995	ENSMODG00000002275	CMSS1	90	75.833	Monodelphis_domestica
ENSEASG00005010966	CMSS1	92	63.366	ENSMALG00000004250	cmss1	69	63.000	Monopterus_albus
ENSEASG00005010966	CMSS1	98	84.651	MGP_CAROLIEiJ_G0020824	Cmss1	96	74.627	Mus_caroli
ENSEASG00005010966	CMSS1	98	86.047	ENSMUSG00000022748	Cmss1	96	75.746	Mus_musculus
ENSEASG00005010966	CMSS1	98	86.047	MGP_PahariEiJ_G0016524	Cmss1	96	75.373	Mus_pahari
ENSEASG00005010966	CMSS1	98	86.047	MGP_SPRETEiJ_G0021724	Cmss1	96	75.746	Mus_spretus
ENSEASG00005010966	CMSS1	99	94.495	ENSMPUG00000011324	CMSS1	99	85.659	Mustela_putorius_furo
ENSEASG00005010966	CMSS1	99	92.308	ENSMLUG00000001131	CMSS1	99	83.142	Myotis_lucifugus
ENSEASG00005010966	CMSS1	99	87.215	ENSNGAG00000020316	Cmss1	96	77.407	Nannospalax_galili
ENSEASG00005010966	CMSS1	92	59.901	ENSNBRG00000003095	cmss1	69	59.500	Neolamprologus_brichardi
ENSEASG00005010966	CMSS1	99	94.064	ENSNLEG00000034172	CMSS1	99	85.000	Nomascus_leucogenys
ENSEASG00005010966	CMSS1	100	65.909	ENSMEUG00000014505	CMSS1	100	66.228	Notamacropus_eugenii
ENSEASG00005010966	CMSS1	99	92.627	ENSOPRG00000002986	CMSS1	96	81.343	Ochotona_princeps
ENSEASG00005010966	CMSS1	100	79.091	ENSODEG00000009446	-	86	79.091	Octodon_degus
ENSEASG00005010966	CMSS1	99	76.712	ENSODEG00000001853	-	93	71.042	Octodon_degus
ENSEASG00005010966	CMSS1	99	88.584	ENSODEG00000005226	-	96	78.067	Octodon_degus
ENSEASG00005010966	CMSS1	99	86.758	ENSODEG00000003558	-	96	78.788	Octodon_degus
ENSEASG00005010966	CMSS1	92	60.396	ENSONIG00000006678	cmss1	77	60.000	Oreochromis_niloticus
ENSEASG00005010966	CMSS1	99	72.603	ENSOANG00000007529	CMSS1	100	72.103	Ornithorhynchus_anatinus
ENSEASG00005010966	CMSS1	99	91.324	ENSOCUG00000025366	CMSS1	99	79.927	Oryctolagus_cuniculus
ENSEASG00005010966	CMSS1	92	62.871	ENSORLG00000020340	cmss1	85	55.422	Oryzias_latipes
ENSEASG00005010966	CMSS1	100	55.000	ENSORLG00020012235	cmss1	85	56.500	Oryzias_latipes_hni
ENSEASG00005010966	CMSS1	92	56.436	ENSORLG00015015551	cmss1	75	56.000	Oryzias_latipes_hsok
ENSEASG00005010966	CMSS1	92	63.366	ENSOMEG00000012555	cmss1	80	60.606	Oryzias_melastigma
ENSEASG00005010966	CMSS1	99	91.781	ENSOGAG00000002045	CMSS1	100	92.105	Otolemur_garnettii
ENSEASG00005010966	CMSS1	99	90.000	ENSOARG00000017899	CMSS1	94	78.755	Ovis_aries
ENSEASG00005010966	CMSS1	99	92.694	ENSPPAG00000038515	CMSS1	84	92.982	Pan_paniscus
ENSEASG00005010966	CMSS1	99	94.521	ENSPPRG00000016767	CMSS1	82	94.298	Panthera_pardus
ENSEASG00005010966	CMSS1	99	94.064	ENSPTIG00000018274	CMSS1	82	93.860	Panthera_tigris_altaica
ENSEASG00005010966	CMSS1	99	92.694	ENSPTRG00000015157	CMSS1	93	92.544	Pan_troglodytes
ENSEASG00005010966	CMSS1	99	92.694	ENSPANG00000019980	CMSS1	93	91.416	Papio_anubis
ENSEASG00005010966	CMSS1	92	63.861	ENSPKIG00000012609	cmss1	85	60.606	Paramormyrops_kingsleyae
ENSEASG00005010966	CMSS1	99	71.689	ENSPSIG00000003849	CMSS1	100	71.179	Pelodiscus_sinensis
ENSEASG00005010966	CMSS1	92	60.591	ENSPMGG00000010286	cmss1	86	60.199	Periophthalmus_magnuspinnatus
ENSEASG00005010966	CMSS1	99	84.475	ENSPEMG00000016384	Cmss1	96	74.444	Peromyscus_maniculatus_bairdii
ENSEASG00005010966	CMSS1	93	50.980	ENSPMAG00000001146	cmss1	98	51.000	Petromyzon_marinus
ENSEASG00005010966	CMSS1	100	77.273	ENSPCIG00000015656	CMSS1	87	76.856	Phascolarctos_cinereus
ENSEASG00005010966	CMSS1	92	62.376	ENSPFOG00000016849	cmss1	70	62.000	Poecilia_formosa
ENSEASG00005010966	CMSS1	92	61.881	ENSPLAG00000008323	cmss1	70	61.500	Poecilia_latipinna
ENSEASG00005010966	CMSS1	92	62.376	ENSPMEG00000021020	cmss1	69	62.000	Poecilia_mexicana
ENSEASG00005010966	CMSS1	92	61.881	ENSPREG00000007618	cmss1	68	61.500	Poecilia_reticulata
ENSEASG00005010966	CMSS1	99	91.781	ENSPPYG00000013606	CMSS1	94	83.658	Pongo_abelii
ENSEASG00005010966	CMSS1	99	93.607	ENSPCOG00000020035	CMSS1	88	93.860	Propithecus_coquereli
ENSEASG00005010966	CMSS1	99	78.539	ENSPVAG00000017031	CMSS1	96	69.517	Pteropus_vampyrus
ENSEASG00005010966	CMSS1	80	62.500	ENSPNYG00000013428	cmss1	64	62.069	Pundamilia_nyererei
ENSEASG00005010966	CMSS1	100	54.545	ENSPNAG00000007912	cmss1	79	54.545	Pygocentrus_nattereri
ENSEASG00005010966	CMSS1	98	84.651	ENSRNOG00000027888	Cmss1	100	75.676	Rattus_norvegicus
ENSEASG00005010966	CMSS1	99	91.781	ENSRBIG00000037931	CMSS1	99	82.692	Rhinopithecus_bieti
ENSEASG00005010966	CMSS1	99	91.781	ENSRROG00000042910	CMSS1	99	82.692	Rhinopithecus_roxellana
ENSEASG00005010966	CMSS1	99	91.324	ENSSBOG00000030980	CMSS1	90	88.983	Saimiri_boliviensis_boliviensis
ENSEASG00005010966	CMSS1	92	79.703	ENSSHAG00000009321	CMSS1	94	75.314	Sarcophilus_harrisii
ENSEASG00005010966	CMSS1	99	60.000	ENSSFOG00015001509	cmss1	80	60.606	Scleropages_formosus
ENSEASG00005010966	CMSS1	92	62.871	ENSSMAG00000001653	cmss1	69	62.500	Scophthalmus_maximus
ENSEASG00005010966	CMSS1	92	62.871	ENSSDUG00000007719	cmss1	81	57.940	Seriola_dumerili
ENSEASG00005010966	CMSS1	94	62.802	ENSSLDG00000012300	cmss1	76	56.522	Seriola_lalandi_dorsalis
ENSEASG00005010966	CMSS1	99	73.973	ENSSARG00000003584	CMSS1	82	74.236	Sorex_araneus
ENSEASG00005010966	CMSS1	92	70.792	ENSSPUG00000003865	CMSS1	100	69.027	Sphenodon_punctatus
ENSEASG00005010966	CMSS1	94	63.107	ENSSPAG00000019182	cmss1	62	63.000	Stegastes_partitus
ENSEASG00005010966	CMSS1	99	93.151	ENSSSCG00000011970	CMSS1	96	82.528	Sus_scrofa
ENSEASG00005010966	CMSS1	99	64.384	ENSTGUG00000013635	CMSS1	100	64.629	Taeniopygia_guttata
ENSEASG00005010966	CMSS1	92	60.891	ENSTRUG00000015265	cmss1	71	60.500	Takifugu_rubripes
ENSEASG00005010966	CMSS1	92	54.950	ENSTNIG00000002880	cmss1	72	54.500	Tetraodon_nigroviridis
ENSEASG00005010966	CMSS1	99	68.493	ENSTBEG00000016722	CMSS1	81	68.860	Tupaia_belangeri
ENSEASG00005010966	CMSS1	99	88.584	ENSTTRG00000001562	CMSS1	96	78.439	Tursiops_truncatus
ENSEASG00005010966	CMSS1	99	93.607	ENSUAMG00000024209	CMSS1	100	93.722	Ursus_americanus
ENSEASG00005010966	CMSS1	99	92.694	ENSUMAG00000001983	CMSS1	99	84.496	Ursus_maritimus
ENSEASG00005010966	CMSS1	99	75.342	ENSVPAG00000000263	CMSS1	82	75.877	Vicugna_pacos
ENSEASG00005010966	CMSS1	99	92.694	ENSVVUG00000021647	-	93	92.544	Vulpes_vulpes
ENSEASG00005010966	CMSS1	99	92.627	ENSVVUG00000007776	-	85	92.627	Vulpes_vulpes
ENSEASG00005010966	CMSS1	92	65.347	ENSXETG00000011858	cmss1	82	62.338	Xenopus_tropicalis
ENSEASG00005010966	CMSS1	95	62.019	ENSXCOG00000018724	cmss1	68	62.000	Xiphophorus_couchianus
ENSEASG00005010966	CMSS1	95	62.019	ENSXMAG00000011243	cmss1	75	62.000	Xiphophorus_maculatus