EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005016110 (Gene tree)
Gene ID: -
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 73983 bases
Position: chrPSZQ01003994.1:17750711-17824693
Accession: 1915
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005027404	ResIII	PF04851.15	3e-07	1	1
ENSEASP00005027473	ResIII	PF04851.15	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005029933	CHD1-208	4197	-	ENSEASP00005027558	1398 (aa)	-	-
ENSEAST00005029744	CHD1-202	5076	-	ENSEASP00005027394	1691 (aa)	-	-
ENSEAST00005029987	CHD1-210	3246	-	ENSEASP00005027611	1081 (aa)	-	-
ENSEAST00005029966	CHD1-209	4299	-	ENSEASP00005027590	1432 (aa)	-	-
ENSEAST00005029764	CHD1-205	4767	-	ENSEASP00005027414	1588 (aa)	-	-
ENSEAST00005029752	CHD1-203	5328	-	ENSEASP00005027402	1775 (aa)	-	-
ENSEAST00005029734	CHD1-201	4539	-	ENSEASP00005027385	1463 (aa)	-	-
ENSEAST00005029834	CHD1-206	4662	-	ENSEASP00005027473	1553 (aa)	-	-
ENSEAST00005029879	CHD1-207	4608	-	ENSEASP00005027513	1535 (aa)	-	-
ENSEAST00005029754	CHD1-204	4218	-	ENSEASP00005027404	1405 (aa)	-	-

Gene Model

Click here to download ENSEASG00005016110's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005016110's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005016110	CHD1	64	35.857	ENSEASG00005023433	CHD6	88	40.396
ENSEASG00005016110	CHD1	87	71.823	ENSEASG00005015526	-	97	72.284

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005016110	CHD1	99	97.923	ENSG00000153922	CHD1	94	92.453	Homo_sapiens
ENSEASG00005016110	CHD1	82	82.541	ENSAPOG00000005764	chd1	97	82.812	Acanthochromis_polyacanthus
ENSEASG00005016110	CHD1	96	74.396	ENSAOCG00000023105	chd1	77	80.474	Amphiprion_ocellaris
ENSEASG00005016110	CHD1	96	75.587	ENSAPEG00000013544	chd1	77	81.959	Amphiprion_percula
ENSEASG00005016110	CHD1	97	74.935	ENSATEG00000010676	chd1	71	81.106	Anabas_testudineus
ENSEASG00005016110	CHD1	87	82.445	ENSAMXG00000010843	chd1	91	83.782	Astyanax_mexicanus
ENSEASG00005016110	CHD1	99	97.711	ENSCATG00000032035	CHD1	92	89.263	Cercocebus_atys
ENSEASG00005016110	CHD1	99	97.711	ENSCSAG00000015339	CHD1	91	89.208	Chlorocebus_sabaeus
ENSEASG00005016110	CHD1	66	88.722	ENSCPBG00000015831	CHD1	91	88.362	Chrysemys_picta_bellii
ENSEASG00005016110	CHD1	99	95.490	ENSCANG00000036916	CHD1	92	86.954	Colobus_angolensis_palliatus
ENSEASG00005016110	CHD1	96	95.938	ENSCGRG00001023943	Chd1	92	88.589	Cricetulus_griseus_chok1gshd
ENSEASG00005016110	CHD1	96	95.938	ENSCGRG00000008652	Chd1	92	88.589	Cricetulus_griseus_crigri
ENSEASG00005016110	CHD1	96	73.941	ENSCSEG00000009553	chd1	95	73.281	Cynoglossus_semilaevis
ENSEASG00005016110	CHD1	97	74.001	ENSELUG00000017677	chd1	75	81.803	Esox_lucius
ENSEASG00005016110	CHD1	87	81.352	ENSFHEG00000021164	chd1	87	83.011	Fundulus_heteroclitus
ENSEASG00005016110	CHD1	95	77.581	ENSGMOG00000001537	chd1	77	77.709	Gadus_morhua
ENSEASG00005016110	CHD1	99	83.988	ENSGALG00000031327	-	78	90.000	Gallus_gallus
ENSEASG00005016110	CHD1	91	82.822	ENSGAFG00000019880	chd1	81	82.822	Gambusia_affinis
ENSEASG00005016110	CHD1	99	93.710	ENSGGOG00000011463	CHD1	92	87.736	Gorilla_gorilla
ENSEASG00005016110	CHD1	96	74.951	ENSHCOG00000014222	chd1	76	81.678	Hippocampus_comes
ENSEASG00005016110	CHD1	93	77.999	ENSIPUG00000001369	chd1	92	77.608	Ictalurus_punctatus
ENSEASG00005016110	CHD1	75	95.558	ENSLAFG00000023183	CHD1	98	95.558	Loxodonta_africana
ENSEASG00005016110	CHD1	99	97.711	ENSMFAG00000031226	CHD1	92	89.201	Macaca_fascicularis
ENSEASG00005016110	CHD1	99	97.856	ENSMMUG00000014090	CHD1	98	97.856	Macaca_mulatta
ENSEASG00005016110	CHD1	99	97.641	ENSMNEG00000045073	CHD1	92	89.201	Macaca_nemestrina
ENSEASG00005016110	CHD1	99	92.505	ENSMLEG00000041096	CHD1	92	85.090	Mandrillus_leucophaeus
ENSEASG00005016110	CHD1	84	83.249	ENSMZEG00005010957	chd1	94	80.336	Maylandia_zebra
ENSEASG00005016110	CHD1	55	68.758	ENSMGAG00000008369	-	100	67.347	Meleagris_gallopavo
ENSEASG00005016110	CHD1	96	96.588	ENSMOCG00000019121	Chd1	90	95.017	Microtus_ochrogaster
ENSEASG00005016110	CHD1	54	95.276	ENSMODG00000019266	-	100	95.144	Monodelphis_domestica
ENSEASG00005016110	CHD1	97	78.363	ENSMALG00000013317	chd1	95	78.462	Monopterus_albus
ENSEASG00005016110	CHD1	96	94.461	MGP_CAROLIEiJ_G0021099	Chd1	97	96.970	Mus_caroli
ENSEASG00005016110	CHD1	96	94.904	ENSMUSG00000023852	Chd1	97	97.254	Mus_musculus
ENSEASG00005016110	CHD1	96	95.421	MGP_PahariEiJ_G0023414	Chd1	98	97.162	Mus_pahari
ENSEASG00005016110	CHD1	81	84.137	ENSNBRG00000006860	chd1	91	81.088	Neolamprologus_brichardi
ENSEASG00005016110	CHD1	99	97.923	ENSNLEG00000014493	CHD1	92	87.283	Nomascus_leucogenys
ENSEASG00005016110	CHD1	97	93.177	ENSOANG00000004891	CHD1	100	86.360	Ornithorhynchus_anatinus
ENSEASG00005016110	CHD1	72	76.500	ENSORLG00015016725	chd1	93	78.122	Oryzias_latipes_hsok
ENSEASG00005016110	CHD1	99	96.365	ENSPPAG00000043367	CHD1	93	87.826	Pan_paniscus
ENSEASG00005016110	CHD1	99	98.066	ENSPTRG00000017103	CHD1	92	89.263	Pan_troglodytes
ENSEASG00005016110	CHD1	99	97.711	ENSPANG00000006387	CHD1	92	89.201	Papio_anubis
ENSEASG00005016110	CHD1	87	78.909	ENSPKIG00000024719	chd1	92	73.492	Paramormyrops_kingsleyae
ENSEASG00005016110	CHD1	89	81.425	ENSPMGG00000005785	chd1	93	81.180	Periophthalmus_magnuspinnatus
ENSEASG00005016110	CHD1	99	96.275	ENSPEMG00000015939	Chd1	91	88.210	Peromyscus_maniculatus_bairdii
ENSEASG00005016110	CHD1	60	76.415	ENSPLAG00000006473	-	85	76.485	Poecilia_latipinna
ENSEASG00005016110	CHD1	97	76.686	ENSPREG00000004209	chd1	91	72.543	Poecilia_reticulata
ENSEASG00005016110	CHD1	97	95.441	ENSRNOG00000014434	Chd1	95	95.368	Rattus_norvegicus
ENSEASG00005016110	CHD1	96	98.003	ENSRBIG00000044325	CHD1	90	95.777	Rhinopithecus_bieti
ENSEASG00005016110	CHD1	99	97.641	ENSRROG00000001726	CHD1	92	89.263	Rhinopithecus_roxellana
ENSEASG00005016110	CHD1	87	82.166	ENSSFOG00015007161	chd1	90	82.496	Scleropages_formosus
ENSEASG00005016110	CHD1	97	78.545	ENSSDUG00000018314	chd1	95	78.178	Seriola_dumerili
ENSEASG00005016110	CHD1	62	83.941	ENSSLDG00000017244	chd1	88	83.941	Seriola_lalandi_dorsalis
ENSEASG00005016110	CHD1	96	78.777	ENSSPAG00000007024	chd1	95	78.777	Stegastes_partitus
ENSEASG00005016110	CHD1	99	97.716	ENSSSCG00000014177	CHD1	95	97.716	Sus_scrofa
ENSEASG00005016110	CHD1	89	78.990	ENSTRUG00000010282	chd1	78	76.716	Takifugu_rubripes
ENSEASG00005016110	CHD1	87	77.380	ENSTNIG00000007101	chd1	95	78.438	Tetraodon_nigroviridis
ENSEASG00005016110	CHD1	97	74.265	ENSXCOG00000017184	chd1	91	71.345	Xiphophorus_couchianus
ENSEASG00005016110	CHD1	94	77.862	ENSXMAG00000014538	chd1	95	77.820	Xiphophorus_maculatus