EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005019122 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 26022 bases
Position: chrPSZQ01000957.1:1056729-1082750
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005028115	EST1	PF10374.9	9.2e-24	1	1
ENSEASP00005028115	EST1_DNA_bind	PF10373.9	5.8e-40	1	2
ENSEASP00005028115	EST1_DNA_bind	PF10373.9	5.8e-40	2	2
ENSEASP00005028115	PIN_4	PF13638.6	7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005030535	SMG5-201	4399	-	ENSEASP00005028115	1016 (aa)	-	-

Gene Model

Click here to download ENSEASG00005019122's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005019122's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005019122	SMG5	100	97.047	ENSG00000198952	SMG5	100	97.047	Homo_sapiens
ENSEASG00005019122	SMG5	99	66.962	ENSAPOG00000019690	smg5	99	66.896	Acanthochromis_polyacanthus
ENSEASG00005019122	SMG5	98	93.051	ENSAMEG00000014458	SMG5	100	93.051	Ailuropoda_melanoleuca
ENSEASG00005019122	SMG5	99	65.355	ENSACIG00000001353	smg5	99	66.089	Amphilophus_citrinellus
ENSEASG00005019122	SMG5	98	64.916	ENSAOCG00000019483	smg5	93	67.111	Amphiprion_ocellaris
ENSEASG00005019122	SMG5	98	66.168	ENSAPEG00000022949	smg5	98	66.833	Amphiprion_percula
ENSEASG00005019122	SMG5	99	66.409	ENSATEG00000005348	smg5	99	67.345	Anabas_testudineus
ENSEASG00005019122	SMG5	98	78.927	ENSAPLG00000010263	SMG5	100	78.732	Anas_platyrhynchos
ENSEASG00005019122	SMG5	100	96.555	ENSANAG00000032899	SMG5	100	96.555	Aotus_nancymaae
ENSEASG00005019122	SMG5	99	65.251	ENSACLG00000009311	smg5	99	66.603	Astatotilapia_calliptera
ENSEASG00005019122	SMG5	100	95.965	ENSBTAG00000009435	SMG5	100	95.965	Bos_taurus
ENSEASG00005019122	SMG5	99	43.957	ENSBTAG00000021747	-	99	43.640	Bos_taurus
ENSEASG00005019122	SMG5	100	96.555	ENSCJAG00000005684	SMG5	100	96.555	Callithrix_jacchus
ENSEASG00005019122	SMG5	100	94.685	ENSCAFG00000016839	SMG5	100	94.685	Canis_familiaris
ENSEASG00005019122	SMG5	100	94.685	ENSCAFG00020006061	SMG5	100	94.685	Canis_lupus_dingo
ENSEASG00005019122	SMG5	100	95.965	ENSCHIG00000007709	SMG5	100	95.965	Capra_hircus
ENSEASG00005019122	SMG5	99	44.862	ENSCHIG00000006323	-	99	44.170	Capra_hircus
ENSEASG00005019122	SMG5	100	96.460	ENSTSYG00000004099	SMG5	100	96.460	Carlito_syrichta
ENSEASG00005019122	SMG5	97	74.239	ENSCAPG00000003631	SMG5	100	74.870	Cavia_aperea
ENSEASG00005019122	SMG5	100	95.187	ENSCPOG00000015696	SMG5	100	94.892	Cavia_porcellus
ENSEASG00005019122	SMG5	100	96.654	ENSCCAG00000027409	SMG5	100	96.654	Cebus_capucinus
ENSEASG00005019122	SMG5	100	97.047	ENSCATG00000030539	SMG5	100	97.047	Cercocebus_atys
ENSEASG00005019122	SMG5	100	95.678	ENSCLAG00000003983	SMG5	100	95.580	Chinchilla_lanigera
ENSEASG00005019122	SMG5	100	96.949	ENSCSAG00000002120	SMG5	100	96.949	Chlorocebus_sabaeus
ENSEASG00005019122	SMG5	54	92.701	ENSCHOG00000008741	-	57	92.701	Choloepus_hoffmanni
ENSEASG00005019122	SMG5	94	78.702	ENSCPBG00000025848	SMG5	100	78.499	Chrysemys_picta_bellii
ENSEASG00005019122	SMG5	93	35.088	ENSCING00000008706	-	99	35.216	Ciona_intestinalis
ENSEASG00005019122	SMG5	100	92.717	ENSCANG00000029208	SMG5	100	92.717	Colobus_angolensis_palliatus
ENSEASG00005019122	SMG5	100	92.043	ENSCGRG00001006336	Smg5	100	92.141	Cricetulus_griseus_chok1gshd
ENSEASG00005019122	SMG5	98	92.153	ENSCGRG00000005111	Smg5	100	92.246	Cricetulus_griseus_crigri
ENSEASG00005019122	SMG5	99	65.034	ENSCSEG00000014220	smg5	99	65.430	Cynoglossus_semilaevis
ENSEASG00005019122	SMG5	99	61.014	ENSCVAG00000000529	smg5	99	61.613	Cyprinodon_variegatus
ENSEASG00005019122	SMG5	100	91.535	ENSDNOG00000000051	SMG5	100	91.535	Dasypus_novemcinctus
ENSEASG00005019122	SMG5	92	36.931	ENSDNOG00000039862	-	100	35.933	Dasypus_novemcinctus
ENSEASG00005019122	SMG5	100	93.713	ENSDORG00000010382	Smg5	100	93.811	Dipodomys_ordii
ENSEASG00005019122	SMG5	82	97.087	ENSETEG00000010336	SMG5	82	97.087	Echinops_telfairi
ENSEASG00005019122	SMG5	90	46.482	ENSEBUG00000003739	smg5	98	46.489	Eptatretus_burgeri
ENSEASG00005019122	SMG5	100	99.803	ENSECAG00000001389	SMG5	100	99.803	Equus_caballus
ENSEASG00005019122	SMG5	72	98.847	ENSEEUG00000012690	SMG5	73	98.847	Erinaceus_europaeus
ENSEASG00005019122	SMG5	99	65.990	ENSELUG00000012585	smg5	99	65.990	Esox_lucius
ENSEASG00005019122	SMG5	100	94.193	ENSFCAG00000011783	SMG5	100	94.199	Felis_catus
ENSEASG00005019122	SMG5	58	82.471	ENSFALG00000001166	-	99	82.580	Ficedula_albicollis
ENSEASG00005019122	SMG5	98	92.951	ENSFDAG00000017388	SMG5	100	92.850	Fukomys_damarensis
ENSEASG00005019122	SMG5	97	61.430	ENSFHEG00000013939	smg5	95	67.732	Fundulus_heteroclitus
ENSEASG00005019122	SMG5	99	78.002	ENSGALG00000029918	-	100	77.514	Gallus_gallus
ENSEASG00005019122	SMG5	74	76.244	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSEASG00005019122	SMG5	100	79.696	ENSGAGG00000016131	SMG5	100	79.392	Gopherus_agassizii
ENSEASG00005019122	SMG5	100	96.949	ENSGGOG00000010932	SMG5	100	96.949	Gorilla_gorilla
ENSEASG00005019122	SMG5	99	65.159	ENSHBUG00000008654	smg5	99	65.842	Haplochromis_burtoni
ENSEASG00005019122	SMG5	100	92.633	ENSHGLG00000019152	SMG5	100	92.829	Heterocephalus_glaber_female
ENSEASG00005019122	SMG5	90	92.771	ENSHGLG00100015948	SMG5	99	92.990	Heterocephalus_glaber_male
ENSEASG00005019122	SMG5	86	73.839	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSEASG00005019122	SMG5	99	62.056	ENSIPUG00000006624	Smg5	99	62.091	Ictalurus_punctatus
ENSEASG00005019122	SMG5	100	96.362	ENSSTOG00000001780	SMG5	100	96.362	Ictidomys_tridecemlineatus
ENSEASG00005019122	SMG5	100	92.345	ENSJJAG00000022763	Smg5	100	92.051	Jaculus_jaculus
ENSEASG00005019122	SMG5	99	65.667	ENSLBEG00000002145	smg5	99	66.184	Labrus_bergylta
ENSEASG00005019122	SMG5	100	64.510	ENSLACG00000010521	SMG5	100	64.700	Latimeria_chalumnae
ENSEASG00005019122	SMG5	100	95.079	ENSLAFG00000006241	SMG5	100	95.079	Loxodonta_africana
ENSEASG00005019122	SMG5	100	96.949	ENSMFAG00000045357	SMG5	100	96.949	Macaca_fascicularis
ENSEASG00005019122	SMG5	100	96.949	ENSMMUG00000000090	SMG5	100	96.949	Macaca_mulatta
ENSEASG00005019122	SMG5	100	96.850	ENSMNEG00000044425	SMG5	100	96.850	Macaca_nemestrina
ENSEASG00005019122	SMG5	100	90.784	ENSMLEG00000041192	SMG5	100	90.784	Mandrillus_leucophaeus
ENSEASG00005019122	SMG5	99	61.017	ENSMAMG00000010683	smg5	100	60.397	Mastacembelus_armatus
ENSEASG00005019122	SMG5	99	64.491	ENSMZEG00005015815	smg5	99	65.167	Maylandia_zebra
ENSEASG00005019122	SMG5	63	59.056	ENSMZEG00005016543	smg5	100	59.848	Maylandia_zebra
ENSEASG00005019122	SMG5	100	90.864	ENSMAUG00000010381	Smg5	100	91.061	Mesocricetus_auratus
ENSEASG00005019122	SMG5	100	96.654	ENSMICG00000002257	SMG5	100	96.654	Microcebus_murinus
ENSEASG00005019122	SMG5	100	91.373	ENSMOCG00000016590	Smg5	100	90.686	Microtus_ochrogaster
ENSEASG00005019122	SMG5	99	58.760	ENSMMOG00000017199	smg5	99	59.263	Mola_mola
ENSEASG00005019122	SMG5	87	89.640	ENSMODG00000016901	SMG5	98	90.090	Monodelphis_domestica
ENSEASG00005019122	SMG5	82	37.986	ENSMODG00000004532	-	83	38.500	Monodelphis_domestica
ENSEASG00005019122	SMG5	78	37.280	ENSMODG00000010675	-	84	37.401	Monodelphis_domestica
ENSEASG00005019122	SMG5	78	38.845	ENSMODG00000004735	-	86	38.933	Monodelphis_domestica
ENSEASG00005019122	SMG5	99	59.840	ENSMALG00000010375	smg5	55	54.619	Monopterus_albus
ENSEASG00005019122	SMG5	100	91.650	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSEASG00005019122	SMG5	100	91.847	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSEASG00005019122	SMG5	100	91.462	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSEASG00005019122	SMG5	100	91.650	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSEASG00005019122	SMG5	94	93.158	ENSMPUG00000004546	SMG5	100	93.158	Mustela_putorius_furo
ENSEASG00005019122	SMG5	100	94.716	ENSMLUG00000008518	SMG5	100	93.836	Myotis_lucifugus
ENSEASG00005019122	SMG5	98	44.289	ENSNGAG00000012101	-	98	44.797	Nannospalax_galili
ENSEASG00005019122	SMG5	100	94.100	ENSNGAG00000020706	Smg5	100	94.100	Nannospalax_galili
ENSEASG00005019122	SMG5	97	63.646	ENSNBRG00000004332	smg5	98	64.487	Neolamprologus_brichardi
ENSEASG00005019122	SMG5	100	96.654	ENSNLEG00000012439	SMG5	100	96.654	Nomascus_leucogenys
ENSEASG00005019122	SMG5	100	87.709	ENSMEUG00000012834	SMG5	100	86.824	Notamacropus_eugenii
ENSEASG00005019122	SMG5	100	94.193	ENSOPRG00000009152	SMG5	100	94.193	Ochotona_princeps
ENSEASG00005019122	SMG5	100	94.882	ENSODEG00000012237	SMG5	100	94.882	Octodon_degus
ENSEASG00005019122	SMG5	98	96.169	ENSOCUG00000012886	SMG5	100	96.169	Oryctolagus_cuniculus
ENSEASG00005019122	SMG5	90	40.282	ENSOCUG00000023338	-	99	39.739	Oryctolagus_cuniculus
ENSEASG00005019122	SMG5	99	64.327	ENSORLG00020013127	smg5	99	65.820	Oryzias_latipes_hni
ENSEASG00005019122	SMG5	99	64.431	ENSORLG00015019014	smg5	99	66.504	Oryzias_latipes_hsok
ENSEASG00005019122	SMG5	82	59.120	ENSOMEG00000021330	smg5	92	60.776	Oryzias_melastigma
ENSEASG00005019122	SMG5	100	94.488	ENSOGAG00000004966	SMG5	100	94.488	Otolemur_garnettii
ENSEASG00005019122	SMG5	100	96.063	ENSOARG00000005778	SMG5	100	96.063	Ovis_aries
ENSEASG00005019122	SMG5	99	44.477	ENSOARG00000011963	-	99	43.512	Ovis_aries
ENSEASG00005019122	SMG5	100	97.047	ENSPPAG00000011996	SMG5	100	97.047	Pan_paniscus
ENSEASG00005019122	SMG5	98	94.153	ENSPPRG00000011901	SMG5	100	94.153	Panthera_pardus
ENSEASG00005019122	SMG5	96	87.258	ENSPTIG00000007892	SMG5	96	87.967	Panthera_tigris_altaica
ENSEASG00005019122	SMG5	100	97.244	ENSPTRG00000049282	-	100	97.244	Pan_troglodytes
ENSEASG00005019122	SMG5	100	97.244	ENSPTRG00000023925	SMG5	100	97.244	Pan_troglodytes
ENSEASG00005019122	SMG5	100	97.047	ENSPANG00000011201	SMG5	100	97.047	Papio_anubis
ENSEASG00005019122	SMG5	99	65.141	ENSPKIG00000009402	smg5	99	66.014	Paramormyrops_kingsleyae
ENSEASG00005019122	SMG5	98	80.377	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSEASG00005019122	SMG5	99	60.534	ENSPMGG00000010465	smg5	99	59.889	Periophthalmus_magnuspinnatus
ENSEASG00005019122	SMG5	56	46.410	ENSPEMG00000010022	-	95	46.935	Peromyscus_maniculatus_bairdii
ENSEASG00005019122	SMG5	100	91.847	ENSPEMG00000001819	Smg5	100	91.945	Peromyscus_maniculatus_bairdii
ENSEASG00005019122	SMG5	99	49.517	ENSPMAG00000000410	smg5	99	50.048	Petromyzon_marinus
ENSEASG00005019122	SMG5	100	89.096	ENSPCIG00000018938	SMG5	100	89.489	Phascolarctos_cinereus
ENSEASG00005019122	SMG5	50	60.967	ENSPFOG00000010191	smg5	99	62.567	Poecilia_formosa
ENSEASG00005019122	SMG5	50	60.409	ENSPLAG00000009332	smg5	99	62.388	Poecilia_latipinna
ENSEASG00005019122	SMG5	99	66.315	ENSPMEG00000014105	smg5	99	66.061	Poecilia_mexicana
ENSEASG00005019122	SMG5	93	70.115	ENSPREG00000017713	smg5	99	62.276	Poecilia_reticulata
ENSEASG00005019122	SMG5	100	97.146	ENSPPYG00000000723	SMG5	100	97.146	Pongo_abelii
ENSEASG00005019122	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSEASG00005019122	SMG5	100	96.752	ENSPCOG00000004741	SMG5	100	96.752	Propithecus_coquereli
ENSEASG00005019122	SMG5	100	86.614	ENSPVAG00000016748	SMG5	100	86.614	Pteropus_vampyrus
ENSEASG00005019122	SMG5	99	60.140	ENSPNYG00000013397	smg5	99	59.167	Pundamilia_nyererei
ENSEASG00005019122	SMG5	100	91.945	ENSRNOG00000019590	Smg5	100	91.945	Rattus_norvegicus
ENSEASG00005019122	SMG5	100	96.752	ENSRBIG00000027428	SMG5	100	96.752	Rhinopithecus_bieti
ENSEASG00005019122	SMG5	100	96.654	ENSRROG00000030035	SMG5	100	96.654	Rhinopithecus_roxellana
ENSEASG00005019122	SMG5	100	96.850	ENSSBOG00000033339	SMG5	100	96.850	Saimiri_boliviensis_boliviensis
ENSEASG00005019122	SMG5	99	33.816	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSEASG00005019122	SMG5	64	39.181	ENSSHAG00000000935	-	82	40.244	Sarcophilus_harrisii
ENSEASG00005019122	SMG5	98	88.589	ENSSHAG00000014163	SMG5	100	88.989	Sarcophilus_harrisii
ENSEASG00005019122	SMG5	86	39.633	ENSSHAG00000000561	-	86	39.633	Sarcophilus_harrisii
ENSEASG00005019122	SMG5	99	65.370	ENSSFOG00015024175	smg5	99	66.146	Scleropages_formosus
ENSEASG00005019122	SMG5	99	60.993	ENSSMAG00000013059	smg5	99	61.586	Scophthalmus_maximus
ENSEASG00005019122	SMG5	99	60.494	ENSSDUG00000007122	smg5	55	56.634	Seriola_dumerili
ENSEASG00005019122	SMG5	99	60.796	ENSSLDG00000011418	smg5	96	61.310	Seriola_lalandi_dorsalis
ENSEASG00005019122	SMG5	90	81.352	ENSSARG00000012484	SMG5	100	81.352	Sorex_araneus
ENSEASG00005019122	SMG5	94	78.217	ENSSPUG00000002260	SMG5	100	77.204	Sphenodon_punctatus
ENSEASG00005019122	SMG5	91	77.283	ENSSPAG00000014266	smg5	98	65.598	Stegastes_partitus
ENSEASG00005019122	SMG5	100	97.736	ENSSSCG00000006490	-	100	97.736	Sus_scrofa
ENSEASG00005019122	SMG5	99	74.975	ENSSSCG00000039308	-	100	74.975	Sus_scrofa
ENSEASG00005019122	SMG5	53	36.166	ENSSSCG00000037182	-	65	42.025	Sus_scrofa
ENSEASG00005019122	SMG5	99	80.613	ENSTGUG00000003748	-	100	80.371	Taeniopygia_guttata
ENSEASG00005019122	SMG5	99	64.382	ENSTRUG00000012580	smg5	99	64.162	Takifugu_rubripes
ENSEASG00005019122	SMG5	99	65.116	ENSTNIG00000010303	smg5	93	75.459	Tetraodon_nigroviridis
ENSEASG00005019122	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSEASG00005019122	SMG5	100	92.028	ENSTTRG00000001401	SMG5	100	92.028	Tursiops_truncatus
ENSEASG00005019122	SMG5	100	93.799	ENSUAMG00000013721	SMG5	100	93.799	Ursus_americanus
ENSEASG00005019122	SMG5	98	89.447	ENSUMAG00000018041	SMG5	97	89.447	Ursus_maritimus
ENSEASG00005019122	SMG5	98	87.185	ENSVPAG00000009446	SMG5	99	87.185	Vicugna_pacos
ENSEASG00005019122	SMG5	100	94.587	ENSVVUG00000005887	SMG5	100	94.587	Vulpes_vulpes
ENSEASG00005019122	SMG5	77	66.121	ENSXETG00000033791	SMG5	99	65.491	Xenopus_tropicalis
ENSEASG00005019122	SMG5	60	76.552	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSEASG00005019122	SMG5	99	65.280	ENSXMAG00000013499	smg5	99	65.698	Xiphophorus_maculatus