EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEASG00005019274 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Minus strand
Length: 109861 bases
Position: chrPSZQ01001886.1:10933744-11043604
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005028359	Upf2	PF04050.14	6.4e-33	1	1
ENSEASP00005028361	Upf2	PF04050.14	6.5e-33	1	1
ENSEASP00005028363	Upf2	PF04050.14	1.2e-17	1	1
ENSEASP00005028359	MIF4G	PF02854.19	7.3e-77	1	3
ENSEASP00005028359	MIF4G	PF02854.19	7.3e-77	2	3
ENSEASP00005028359	MIF4G	PF02854.19	7.3e-77	3	3
ENSEASP00005028363	MIF4G	PF02854.19	1.1e-76	1	3
ENSEASP00005028363	MIF4G	PF02854.19	1.1e-76	2	3
ENSEASP00005028363	MIF4G	PF02854.19	1.1e-76	3	3
ENSEASP00005028361	MIF4G	PF02854.19	3.4e-43	1	3
ENSEASP00005028361	MIF4G	PF02854.19	3.4e-43	2	3
ENSEASP00005028361	MIF4G	PF02854.19	3.4e-43	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005030795	UPF2-201	3949	-	ENSEASP00005028359	1270 (aa)	-	UPI00071A69B5
ENSEAST00005030797	UPF2-202	3673	-	ENSEASP00005028361	1178 (aa)	-	-
ENSEAST00005030799	UPF2-203	4104	-	ENSEASP00005028363	1190 (aa)	-	-

Gene Model

Click here to download ENSEASG00005019274's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005019274's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005019274	UPF2	100	99.383	ENSG00000151461	UPF2	100	97.877	Homo_sapiens
ENSEASG00005019274	UPF2	99	78.654	ENSAPOG00000015837	UPF2	100	78.056	Acanthochromis_polyacanthus
ENSEASG00005019274	UPF2	100	98.765	ENSAMEG00000004586	UPF2	100	98.741	Ailuropoda_melanoleuca
ENSEASG00005019274	UPF2	99	82.174	ENSACIG00000018078	UPF2	100	82.095	Amphilophus_citrinellus
ENSEASG00005019274	UPF2	100	82.599	ENSAOCG00000016766	UPF2	100	82.436	Amphiprion_ocellaris
ENSEASG00005019274	UPF2	100	82.715	ENSAPEG00000019084	UPF2	100	82.514	Amphiprion_percula
ENSEASG00005019274	UPF2	100	82.367	ENSATEG00000021677	UPF2	99	82.229	Anabas_testudineus
ENSEASG00005019274	UPF2	100	86.792	ENSAPLG00000010287	UPF2	90	91.138	Anas_platyrhynchos
ENSEASG00005019274	UPF2	100	94.444	ENSACAG00000009259	UPF2	100	91.031	Anolis_carolinensis
ENSEASG00005019274	UPF2	99	98.447	ENSANAG00000028451	UPF2	92	98.447	Aotus_nancymaae
ENSEASG00005019274	UPF2	100	81.499	ENSACLG00000012696	UPF2	100	82.201	Astatotilapia_calliptera
ENSEASG00005019274	UPF2	99	83.099	ENSAMXG00000013700	UPF2	99	82.473	Astyanax_mexicanus
ENSEASG00005019274	UPF2	100	98.765	ENSBTAG00000000288	UPF2	100	98.662	Bos_taurus
ENSEASG00005019274	UPF2	100	98.765	ENSCJAG00000020685	UPF2	100	97.797	Callithrix_jacchus
ENSEASG00005019274	UPF2	100	98.765	ENSCAFG00000004839	UPF2	100	98.741	Canis_familiaris
ENSEASG00005019274	UPF2	99	98.483	ENSCAFG00020005882	UPF2	98	98.318	Canis_lupus_dingo
ENSEASG00005019274	UPF2	100	98.765	ENSCHIG00000020359	UPF2	100	98.741	Capra_hircus
ENSEASG00005019274	UPF2	100	98.457	ENSTSYG00000000935	UPF2	100	97.561	Carlito_syrichta
ENSEASG00005019274	UPF2	91	89.187	ENSCAPG00000016658	UPF2	95	86.919	Cavia_aperea
ENSEASG00005019274	UPF2	99	97.516	ENSCPOG00000008809	UPF2	99	96.032	Cavia_porcellus
ENSEASG00005019274	UPF2	100	99.074	ENSCCAG00000035991	UPF2	100	92.368	Cebus_capucinus
ENSEASG00005019274	UPF2	100	99.383	ENSCATG00000032679	UPF2	100	97.877	Cercocebus_atys
ENSEASG00005019274	UPF2	100	97.795	ENSCLAG00000011434	UPF2	100	97.795	Chinchilla_lanigera
ENSEASG00005019274	UPF2	100	99.383	ENSCSAG00000013372	UPF2	100	97.956	Chlorocebus_sabaeus
ENSEASG00005019274	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSEASG00005019274	UPF2	99	96.894	ENSCPBG00000027823	UPF2	100	92.744	Chrysemys_picta_bellii
ENSEASG00005019274	UPF2	79	48.865	ENSCSAVG00000007772	-	79	50.509	Ciona_savignyi
ENSEASG00005019274	UPF2	99	96.737	ENSCANG00000040396	UPF2	100	90.480	Colobus_angolensis_palliatus
ENSEASG00005019274	UPF2	100	98.148	ENSCGRG00001019347	Upf2	100	97.876	Cricetulus_griseus_chok1gshd
ENSEASG00005019274	UPF2	100	98.148	ENSCGRG00000017993	Upf2	100	97.876	Cricetulus_griseus_crigri
ENSEASG00005019274	UPF2	99	78.052	ENSCSEG00000003520	UPF2	99	77.244	Cynoglossus_semilaevis
ENSEASG00005019274	UPF2	99	82.160	ENSCVAG00000006167	UPF2	100	81.525	Cyprinodon_variegatus
ENSEASG00005019274	UPF2	100	98.662	ENSDNOG00000018160	UPF2	100	98.662	Dasypus_novemcinctus
ENSEASG00005019274	UPF2	100	97.666	ENSDORG00000002478	Upf2	100	97.640	Dipodomys_ordii
ENSEASG00005019274	UPF2	88	38.503	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSEASG00005019274	UPF2	78	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSEASG00005019274	UPF2	74	68.955	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSEASG00005019274	UPF2	100	99.921	ENSECAG00000017022	UPF2	100	99.921	Equus_caballus
ENSEASG00005019274	UPF2	88	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSEASG00005019274	UPF2	99	82.095	ENSELUG00000012014	UPF2	100	81.415	Esox_lucius
ENSEASG00005019274	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	98.584	Felis_catus
ENSEASG00005019274	UPF2	100	95.062	ENSFALG00000001889	UPF2	98	91.975	Ficedula_albicollis
ENSEASG00005019274	UPF2	100	97.480	ENSFDAG00000014348	UPF2	100	97.480	Fukomys_damarensis
ENSEASG00005019274	UPF2	99	82.325	ENSFHEG00000009826	UPF2	99	82.171	Fundulus_heteroclitus
ENSEASG00005019274	UPF2	91	83.851	ENSGMOG00000005557	UPF2	100	79.609	Gadus_morhua
ENSEASG00005019274	UPF2	100	95.370	ENSGALG00000033772	UPF2	100	92.138	Gallus_gallus
ENSEASG00005019274	UPF2	100	80.328	ENSGAFG00000020867	UPF2	100	81.109	Gambusia_affinis
ENSEASG00005019274	UPF2	90	86.541	ENSGACG00000001080	UPF2	100	81.783	Gasterosteus_aculeatus
ENSEASG00005019274	UPF2	100	96.296	ENSGAGG00000002700	UPF2	100	91.424	Gopherus_agassizii
ENSEASG00005019274	UPF2	100	99.383	ENSGGOG00000001479	UPF2	100	97.877	Gorilla_gorilla
ENSEASG00005019274	UPF2	100	81.343	ENSHBUG00000004249	UPF2	100	82.174	Haplochromis_burtoni
ENSEASG00005019274	UPF2	100	97.795	ENSHGLG00000015176	-	100	97.795	Heterocephalus_glaber_female
ENSEASG00005019274	UPF2	99	90.606	ENSHGLG00000003822	-	94	91.641	Heterocephalus_glaber_female
ENSEASG00005019274	UPF2	99	94.795	ENSHGLG00100010036	UPF2	100	94.874	Heterocephalus_glaber_male
ENSEASG00005019274	UPF2	100	79.705	ENSHCOG00000004025	UPF2	99	80.171	Hippocampus_comes
ENSEASG00005019274	UPF2	100	81.123	ENSIPUG00000015524	UPF2	100	81.655	Ictalurus_punctatus
ENSEASG00005019274	UPF2	100	97.954	ENSSTOG00000013075	UPF2	100	97.954	Ictidomys_tridecemlineatus
ENSEASG00005019274	UPF2	100	96.914	ENSJJAG00000004913	Upf2	100	96.853	Jaculus_jaculus
ENSEASG00005019274	UPF2	91	86.551	ENSKMAG00000001071	UPF2	99	82.078	Kryptolebias_marmoratus
ENSEASG00005019274	UPF2	100	82.619	ENSLBEG00000016394	-	99	82.555	Labrus_bergylta
ENSEASG00005019274	UPF2	85	81.711	ENSLBEG00000000728	-	93	81.809	Labrus_bergylta
ENSEASG00005019274	UPF2	99	79.389	ENSLACG00000015945	UPF2	100	78.683	Latimeria_chalumnae
ENSEASG00005019274	UPF2	99	85.343	ENSLOCG00000015698	UPF2	100	85.264	Lepisosteus_oculatus
ENSEASG00005019274	UPF2	100	99.383	ENSMFAG00000043865	UPF2	100	97.799	Macaca_fascicularis
ENSEASG00005019274	UPF2	100	99.383	ENSMMUG00000008241	UPF2	100	97.799	Macaca_mulatta
ENSEASG00005019274	UPF2	86	96.976	ENSMNEG00000008062	UPF2	100	96.976	Macaca_nemestrina
ENSEASG00005019274	UPF2	99	96.853	ENSMLEG00000036120	UPF2	100	100.000	Mandrillus_leucophaeus
ENSEASG00005019274	UPF2	100	82.135	ENSMAMG00000018276	UPF2	100	81.995	Mastacembelus_armatus
ENSEASG00005019274	UPF2	100	81.499	ENSMZEG00005021595	UPF2	100	82.201	Maylandia_zebra
ENSEASG00005019274	UPF2	99	95.046	ENSMGAG00000004573	UPF2	99	91.654	Meleagris_gallopavo
ENSEASG00005019274	UPF2	100	98.148	ENSMAUG00000016512	Upf2	100	95.594	Mesocricetus_auratus
ENSEASG00005019274	UPF2	95	99.505	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSEASG00005019274	UPF2	100	96.929	ENSMOCG00000008263	Upf2	100	96.929	Microtus_ochrogaster
ENSEASG00005019274	UPF2	89	87.158	ENSMMOG00000006528	UPF2	100	79.421	Mola_mola
ENSEASG00005019274	UPF2	100	97.222	ENSMODG00000016794	UPF2	100	94.335	Monodelphis_domestica
ENSEASG00005019274	UPF2	99	81.671	ENSMALG00000002663	UPF2	100	81.740	Monopterus_albus
ENSEASG00005019274	UPF2	100	97.246	MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	Mus_caroli
ENSEASG00005019274	UPF2	100	97.246	ENSMUSG00000043241	Upf2	100	97.246	Mus_musculus
ENSEASG00005019274	UPF2	100	97.089	MGP_PahariEiJ_G0019217	Upf2	100	97.524	Mus_pahari
ENSEASG00005019274	UPF2	100	97.482	MGP_SPRETEiJ_G0024075	Upf2	100	97.905	Mus_spretus
ENSEASG00005019274	UPF2	100	99.383	ENSMPUG00000001064	UPF2	100	98.820	Mustela_putorius_furo
ENSEASG00005019274	UPF2	99	98.447	ENSMLUG00000000228	UPF2	100	98.350	Myotis_lucifugus
ENSEASG00005019274	UPF2	100	81.499	ENSNBRG00000013629	UPF2	100	82.201	Neolamprologus_brichardi
ENSEASG00005019274	UPF2	100	99.074	ENSNLEG00000012058	UPF2	100	97.720	Nomascus_leucogenys
ENSEASG00005019274	UPF2	57	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSEASG00005019274	UPF2	87	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSEASG00005019274	UPF2	100	97.323	ENSODEG00000001290	UPF2	100	97.323	Octodon_degus
ENSEASG00005019274	UPF2	100	81.577	ENSONIG00000017991	UPF2	100	82.279	Oreochromis_niloticus
ENSEASG00005019274	UPF2	99	97.826	ENSOCUG00000006230	UPF2	100	97.412	Oryctolagus_cuniculus
ENSEASG00005019274	UPF2	100	81.439	ENSORLG00000017189	UPF2	100	80.952	Oryzias_latipes
ENSEASG00005019274	UPF2	100	81.323	ENSORLG00020005969	UPF2	100	80.952	Oryzias_latipes_hni
ENSEASG00005019274	UPF2	100	81.323	ENSORLG00015005713	UPF2	100	80.952	Oryzias_latipes_hsok
ENSEASG00005019274	UPF2	99	78.409	ENSOMEG00000023420	UPF2	98	78.247	Oryzias_melastigma
ENSEASG00005019274	UPF2	100	98.457	ENSOGAG00000005796	UPF2	100	97.797	Otolemur_garnettii
ENSEASG00005019274	UPF2	100	98.586	ENSOARG00000014587	UPF2	100	98.586	Ovis_aries
ENSEASG00005019274	UPF2	99	96.853	ENSPPAG00000037953	UPF2	100	92.992	Pan_paniscus
ENSEASG00005019274	UPF2	100	98.584	ENSPPRG00000000690	UPF2	100	98.584	Panthera_pardus
ENSEASG00005019274	UPF2	100	98.584	ENSPTIG00000008867	UPF2	100	98.584	Panthera_tigris_altaica
ENSEASG00005019274	UPF2	100	99.383	ENSPTRG00000002291	UPF2	100	97.877	Pan_troglodytes
ENSEASG00005019274	UPF2	100	99.383	ENSPANG00000023399	UPF2	100	97.799	Papio_anubis
ENSEASG00005019274	UPF2	100	81.123	ENSPKIG00000025502	UPF2	100	80.265	Paramormyrops_kingsleyae
ENSEASG00005019274	UPF2	64	88.579	ENSPSIG00000015158	UPF2	95	91.368	Pelodiscus_sinensis
ENSEASG00005019274	UPF2	99	79.167	ENSPMGG00000005259	UPF2	100	80.031	Periophthalmus_magnuspinnatus
ENSEASG00005019274	UPF2	93	88.630	ENSPEMG00000015731	Upf2	99	88.630	Peromyscus_maniculatus_bairdii
ENSEASG00005019274	UPF2	100	96.605	ENSPCIG00000006656	UPF2	100	93.942	Phascolarctos_cinereus
ENSEASG00005019274	UPF2	100	80.406	ENSPFOG00000017118	UPF2	100	81.187	Poecilia_formosa
ENSEASG00005019274	UPF2	100	80.406	ENSPLAG00000005094	UPF2	100	81.187	Poecilia_latipinna
ENSEASG00005019274	UPF2	100	80.406	ENSPMEG00000017009	UPF2	100	81.187	Poecilia_mexicana
ENSEASG00005019274	UPF2	99	80.329	ENSPREG00000021880	UPF2	100	81.426	Poecilia_reticulata
ENSEASG00005019274	UPF2	66	99.402	ENSPPYG00000002089	-	100	99.402	Pongo_abelii
ENSEASG00005019274	UPF2	99	97.222	ENSPCAG00000000684	UPF2	93	97.222	Procavia_capensis
ENSEASG00005019274	UPF2	99	97.083	ENSPCOG00000021656	UPF2	100	95.193	Propithecus_coquereli
ENSEASG00005019274	UPF2	100	97.840	ENSPVAG00000017286	UPF2	93	97.840	Pteropus_vampyrus
ENSEASG00005019274	UPF2	99	79.046	ENSPNYG00000017096	UPF2	100	79.750	Pundamilia_nyererei
ENSEASG00005019274	UPF2	100	84.241	ENSPNAG00000009357	UPF2	100	82.839	Pygocentrus_nattereri
ENSEASG00005019274	UPF2	99	90.221	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSEASG00005019274	UPF2	99	97.516	ENSRBIG00000037780	UPF2	100	96.769	Rhinopithecus_bieti
ENSEASG00005019274	UPF2	100	99.074	ENSRROG00000043547	UPF2	100	97.720	Rhinopithecus_roxellana
ENSEASG00005019274	UPF2	100	98.765	ENSSBOG00000020012	UPF2	100	97.954	Saimiri_boliviensis_boliviensis
ENSEASG00005019274	UPF2	100	81.669	ENSSFOG00015023788	upf2	100	83.073	Scleropages_formosus
ENSEASG00005019274	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	79.690	Scophthalmus_maximus
ENSEASG00005019274	UPF2	100	81.787	ENSSDUG00000017244	UPF2	99	82.358	Seriola_dumerili
ENSEASG00005019274	UPF2	99	81.787	ENSSLDG00000016866	UPF2	100	80.721	Seriola_lalandi_dorsalis
ENSEASG00005019274	UPF2	100	96.605	ENSSARG00000008615	UPF2	100	94.650	Sorex_araneus
ENSEASG00005019274	UPF2	99	95.046	ENSSPUG00000014544	UPF2	99	90.079	Sphenodon_punctatus
ENSEASG00005019274	UPF2	68	99.079	ENSSSCG00000011117	-	100	99.079	Sus_scrofa
ENSEASG00005019274	UPF2	99	95.016	ENSTGUG00000002163	-	100	91.956	Taeniopygia_guttata
ENSEASG00005019274	UPF2	100	81.216	ENSTRUG00000007519	UPF2	99	81.733	Takifugu_rubripes
ENSEASG00005019274	UPF2	100	80.156	ENSTNIG00000004453	UPF2	100	79.891	Tetraodon_nigroviridis
ENSEASG00005019274	UPF2	99	89.500	ENSTBEG00000012679	UPF2	93	89.077	Tupaia_belangeri
ENSEASG00005019274	UPF2	100	98.765	ENSTTRG00000016388	UPF2	100	98.425	Tursiops_truncatus
ENSEASG00005019274	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSEASG00005019274	UPF2	100	99.074	ENSUMAG00000012953	UPF2	95	98.899	Ursus_maritimus
ENSEASG00005019274	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSEASG00005019274	UPF2	100	98.765	ENSVVUG00000006166	UPF2	100	98.662	Vulpes_vulpes
ENSEASG00005019274	UPF2	100	81.714	ENSXETG00000033103	UPF2	100	81.025	Xenopus_tropicalis
ENSEASG00005019274	UPF2	99	78.886	ENSXCOG00000011604	UPF2	100	81.079	Xiphophorus_couchianus
ENSEASG00005019274	UPF2	100	80.250	ENSXMAG00000017209	UPF2	100	81.030	Xiphophorus_maculatus