EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEASG00005023433 (Gene tree)
Gene ID: -
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Equus_asinus_asinus
Status: putative
Strand: Plus strand
Length: 135672 bases
Position: chrPSZQ01004655.1:18261035-18396706
Accession: 19057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEASP00005034333	ResIII	PF04851.15	1.7e-08	1	1
ENSEASP00005034331	ResIII	PF04851.15	3.3e-08	1	1
ENSEASP00005034328	ResIII	PF04851.15	3.5e-08	1	1
ENSEASP00005034332	ResIII	PF04851.15	4.3e-08	1	1
ENSEASP00005034330	ResIII	PF04851.15	4.4e-08	1	1
ENSEASP00005034329	ResIII	PF04851.15	6.2e-08	1	1
ENSEASP00005034327	ResIII	PF04851.15	7.8e-08	1	1
ENSEASP00005034326	ResIII	PF04851.15	7.8e-08	1	1
ENSEASP00005034325	ResIII	PF04851.15	8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEAST00005037421	CHD6-209	1635	-	ENSEASP00005034333	544 (aa)	-	-
ENSEAST00005037420	CHD6-208	3222	-	ENSEASP00005034332	1073 (aa)	-	-
ENSEAST00005037419	CHD6-207	4992	-	ENSEASP00005034331	1663 (aa)	-	-
ENSEAST00005037418	CHD6-206	5610	-	ENSEASP00005034330	1869 (aa)	-	-
ENSEAST00005037413	CHD6-201	8148	-	ENSEASP00005034325	2715 (aa)	-	-
ENSEAST00005037417	CHD6-205	6540	-	ENSEASP00005034329	2179 (aa)	-	-
ENSEAST00005037416	CHD6-204	5373	-	ENSEASP00005034328	1790 (aa)	-	-
ENSEAST00005037415	CHD6-203	8112	-	ENSEASP00005034327	2703 (aa)	-	-
ENSEAST00005037414	CHD6-202	8130	-	ENSEASP00005034326	2709 (aa)	-	-

Gene Model

Click here to download ENSEASG00005023433's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEASG00005023433's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEASG00005023433	CHD6	95	76.686	ENSEASG00005016258	CHD7	71	65.767
ENSEASG00005023433	CHD6	72	34.989	ENSEASG00005011764	HELLS	74	39.427
ENSEASG00005023433	CHD6	95	75.483	ENSEASG00005014832	CHD9	92	68.678
ENSEASG00005023433	CHD6	88	41.954	ENSEASG00005021464	CHD5	57	34.936
ENSEASG00005023433	CHD6	69	32.941	ENSEASG00005012382	SMARCAD1	60	34.186
ENSEASG00005023433	CHD6	88	43.436	ENSEASG00005019360	CHD3	50	37.343
ENSEASG00005023433	CHD6	92	38.787	ENSEASG00005015526	-	66	36.813
ENSEASG00005023433	CHD6	72	41.058	ENSEASG00005001866	SMARCA5	57	42.182
ENSEASG00005023433	CHD6	69	40.625	ENSEASG00005007364	CHD1L	57	40.990
ENSEASG00005023433	CHD6	88	40.396	ENSEASG00005016110	CHD1	64	35.857
ENSEASG00005023433	CHD6	95	75.915	ENSEASG00005010882	CHD8	74	62.697
ENSEASG00005023433	CHD6	75	40.000	ENSEASG00005008218	SMARCA1	54	42.210

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEASG00005023433	CHD6	95	97.876	ENSG00000124177	CHD6	99	100.000	Homo_sapiens
ENSEASG00005023433	CHD6	95	86.513	ENSAPOG00000013736	chd6	61	81.611	Acanthochromis_polyacanthus
ENSEASG00005023433	CHD6	95	97.683	ENSAMEG00000009496	CHD6	99	92.910	Ailuropoda_melanoleuca
ENSEASG00005023433	CHD6	95	86.127	ENSATEG00000005608	chd6	61	81.970	Anabas_testudineus
ENSEASG00005023433	CHD6	95	94.015	ENSAPLG00000015592	CHD6	99	72.721	Anas_platyrhynchos
ENSEASG00005023433	CHD6	94	84.990	ENSACAG00000006842	CHD6	99	67.962	Anolis_carolinensis
ENSEASG00005023433	CHD6	100	98.352	ENSANAG00000037548	CHD6	100	98.352	Aotus_nancymaae
ENSEASG00005023433	CHD6	94	87.524	ENSAMXG00000009576	chd6	77	70.379	Astyanax_mexicanus
ENSEASG00005023433	CHD6	95	97.876	ENSBTAG00000005733	CHD6	99	89.303	Bos_taurus
ENSEASG00005023433	CHD6	100	98.168	ENSCJAG00000017920	CHD6	100	98.168	Callithrix_jacchus
ENSEASG00005023433	CHD6	95	97.683	ENSCAFG00000009236	CHD6	99	93.242	Canis_familiaris
ENSEASG00005023433	CHD6	100	97.431	ENSCAFG00020012906	CHD6	99	98.616	Canis_lupus_dingo
ENSEASG00005023433	CHD6	95	97.876	ENSCHIG00000017606	CHD6	99	89.759	Capra_hircus
ENSEASG00005023433	CHD6	90	91.771	ENSTSYG00000014635	CHD6	100	90.885	Carlito_syrichta
ENSEASG00005023433	CHD6	95	97.683	ENSCPOG00000015641	CHD6	99	90.214	Cavia_porcellus
ENSEASG00005023433	CHD6	100	98.352	ENSCCAG00000036828	CHD6	100	98.352	Cebus_capucinus
ENSEASG00005023433	CHD6	100	98.352	ENSCATG00000039248	CHD6	100	98.352	Cercocebus_atys
ENSEASG00005023433	CHD6	95	97.490	ENSCLAG00000013743	CHD6	99	90.310	Chinchilla_lanigera
ENSEASG00005023433	CHD6	95	97.876	ENSCSAG00000013997	CHD6	99	92.166	Chlorocebus_sabaeus
ENSEASG00005023433	CHD6	95	91.342	ENSCHOG00000012647	CHD6	95	88.852	Choloepus_hoffmanni
ENSEASG00005023433	CHD6	95	93.822	ENSCPBG00000019382	CHD6	99	73.446	Chrysemys_picta_bellii
ENSEASG00005023433	CHD6	100	98.352	ENSCANG00000043435	CHD6	100	98.352	Colobus_angolensis_palliatus
ENSEASG00005023433	CHD6	95	95.560	ENSCGRG00001002694	Chd6	99	88.220	Cricetulus_griseus_chok1gshd
ENSEASG00005023433	CHD6	100	95.971	ENSCGRG00000006749	-	100	95.971	Cricetulus_griseus_crigri
ENSEASG00005023433	CHD6	94	88.086	ENSDARG00000017244	chd6	70	83.392	Danio_rerio
ENSEASG00005023433	CHD6	95	97.297	ENSDNOG00000004176	CHD6	99	90.503	Dasypus_novemcinctus
ENSEASG00005023433	CHD6	99	98.708	ENSECAG00000011761	CHD6	99	98.708	Equus_caballus
ENSEASG00005023433	CHD6	94	86.355	ENSELUG00000012309	chd6	89	80.575	Esox_lucius
ENSEASG00005023433	CHD6	95	97.683	ENSFCAG00000003572	CHD6	99	92.836	Felis_catus
ENSEASG00005023433	CHD6	95	93.436	ENSFALG00000012563	CHD6	97	71.811	Ficedula_albicollis
ENSEASG00005023433	CHD6	95	96.911	ENSFDAG00000013791	CHD6	99	90.624	Fukomys_damarensis
ENSEASG00005023433	CHD6	89	84.568	ENSGMOG00000011715	chd6	84	71.290	Gadus_morhua
ENSEASG00005023433	CHD6	90	84.458	ENSGACG00000000037	chd6	92	64.543	Gasterosteus_aculeatus
ENSEASG00005023433	CHD6	61	94.012	ENSGAGG00000007475	-	80	93.353	Gopherus_agassizii
ENSEASG00005023433	CHD6	100	98.352	ENSGGOG00000013123	CHD6	100	98.352	Gorilla_gorilla
ENSEASG00005023433	CHD6	95	85.356	ENSHBUG00000014701	chd6	60	80.857	Haplochromis_burtoni
ENSEASG00005023433	CHD6	95	97.104	ENSHGLG00000004548	CHD6	99	90.845	Heterocephalus_glaber_female
ENSEASG00005023433	CHD6	95	97.104	ENSHGLG00100006401	CHD6	99	90.845	Heterocephalus_glaber_male
ENSEASG00005023433	CHD6	94	86.745	ENSIPUG00000003692	chd6	75	77.149	Ictalurus_punctatus
ENSEASG00005023433	CHD6	95	97.683	ENSSTOG00000013382	CHD6	99	91.124	Ictidomys_tridecemlineatus
ENSEASG00005023433	CHD6	95	88.417	ENSLACG00000010881	CHD6	84	75.986	Latimeria_chalumnae
ENSEASG00005023433	CHD6	94	88.109	ENSLOCG00000007386	chd6	84	75.441	Lepisosteus_oculatus
ENSEASG00005023433	CHD6	95	97.490	ENSLAFG00000012144	CHD6	99	91.719	Loxodonta_africana
ENSEASG00005023433	CHD6	100	98.352	ENSMFAG00000032830	CHD6	100	98.352	Macaca_fascicularis
ENSEASG00005023433	CHD6	100	98.352	ENSMMUG00000020458	CHD6	100	98.352	Macaca_mulatta
ENSEASG00005023433	CHD6	100	98.352	ENSMNEG00000040847	CHD6	100	98.352	Macaca_nemestrina
ENSEASG00005023433	CHD6	100	98.352	ENSMLEG00000031965	CHD6	100	98.352	Mandrillus_leucophaeus
ENSEASG00005023433	CHD6	95	85.742	ENSMAMG00000013111	chd6	61	81.507	Mastacembelus_armatus
ENSEASG00005023433	CHD6	95	93.449	ENSMGAG00000001121	CHD6	100	71.830	Meleagris_gallopavo
ENSEASG00005023433	CHD6	100	97.802	ENSMICG00000016641	CHD6	100	97.802	Microcebus_murinus
ENSEASG00005023433	CHD6	95	95.753	ENSMOCG00000014004	-	97	94.438	Microtus_ochrogaster
ENSEASG00005023433	CHD6	95	96.139	ENSMODG00000000720	-	99	80.554	Monodelphis_domestica
ENSEASG00005023433	CHD6	95	95.174	MGP_CAROLIEiJ_G0024604	Chd6	99	94.444	Mus_caroli
ENSEASG00005023433	CHD6	95	95.174	ENSMUSG00000057133	Chd6	99	94.359	Mus_musculus
ENSEASG00005023433	CHD6	95	95.367	MGP_PahariEiJ_G0026048	Chd6	99	94.786	Mus_pahari
ENSEASG00005023433	CHD6	95	95.174	MGP_SPRETEiJ_G0025526	Chd6	99	94.444	Mus_spretus
ENSEASG00005023433	CHD6	95	97.683	ENSMPUG00000017695	CHD6	99	91.700	Mustela_putorius_furo
ENSEASG00005023433	CHD6	95	97.297	ENSMLUG00000016247	CHD6	99	92.641	Myotis_lucifugus
ENSEASG00005023433	CHD6	95	85.756	ENSNBRG00000013839	chd6	80	72.785	Neolamprologus_brichardi
ENSEASG00005023433	CHD6	99	91.729	ENSNLEG00000006496	CHD6	99	91.729	Nomascus_leucogenys
ENSEASG00005023433	CHD6	95	92.205	ENSOPRG00000013376	-	99	86.464	Ochotona_princeps
ENSEASG00005023433	CHD6	95	85.549	ENSONIG00000000393	chd6	85	74.681	Oreochromis_niloticus
ENSEASG00005023433	CHD6	95	93.822	ENSOANG00000014347	CHD6	99	70.445	Ornithorhynchus_anatinus
ENSEASG00005023433	CHD6	95	97.876	ENSOCUG00000012394	CHD6	99	88.737	Oryctolagus_cuniculus
ENSEASG00005023433	CHD6	96	84.130	ENSORLG00020021891	chd6	99	84.130	Oryzias_latipes_hni
ENSEASG00005023433	CHD6	95	97.490	ENSOGAG00000002427	CHD6	99	89.993	Otolemur_garnettii
ENSEASG00005023433	CHD6	95	97.876	ENSOARG00000002597	CHD6	99	87.579	Ovis_aries
ENSEASG00005023433	CHD6	95	97.683	ENSPPRG00000014756	CHD6	99	92.973	Panthera_pardus
ENSEASG00005023433	CHD6	95	97.683	ENSPTIG00000011094	CHD6	99	92.836	Panthera_tigris_altaica
ENSEASG00005023433	CHD6	100	98.352	ENSPTRG00000013504	CHD6	99	98.352	Pan_troglodytes
ENSEASG00005023433	CHD6	100	98.168	ENSPANG00000025554	CHD6	100	98.168	Papio_anubis
ENSEASG00005023433	CHD6	94	88.109	ENSPKIG00000005578	chd6	79	73.350	Paramormyrops_kingsleyae
ENSEASG00005023433	CHD6	95	86.293	ENSPMGG00000014877	chd6	83	77.315	Periophthalmus_magnuspinnatus
ENSEASG00005023433	CHD6	100	95.971	ENSPEMG00000014672	-	100	95.971	Peromyscus_maniculatus_bairdii
ENSEASG00005023433	CHD6	95	95.946	ENSPCIG00000028037	CHD6	99	80.332	Phascolarctos_cinereus
ENSEASG00005023433	CHD6	95	85.356	ENSPLAG00000003128	chd6	64	81.245	Poecilia_latipinna
ENSEASG00005023433	CHD6	96	85.029	ENSPREG00000022653	chd6	99	86.765	Poecilia_reticulata
ENSEASG00005023433	CHD6	95	97.876	ENSPPYG00000011016	CHD6	99	92.464	Pongo_abelii
ENSEASG00005023433	CHD6	100	98.352	ENSPCOG00000001089	CHD6	100	98.352	Propithecus_coquereli
ENSEASG00005023433	CHD6	95	85.356	ENSPNYG00000022516	chd6	80	73.761	Pundamilia_nyererei
ENSEASG00005023433	CHD6	94	88.109	ENSPNAG00000012825	chd6	78	70.964	Pygocentrus_nattereri
ENSEASG00005023433	CHD6	95	94.981	ENSRNOG00000016744	Chd6	99	86.541	Rattus_norvegicus
ENSEASG00005023433	CHD6	100	98.352	ENSSBOG00000022089	CHD6	99	98.352	Saimiri_boliviensis_boliviensis
ENSEASG00005023433	CHD6	95	95.946	ENSSHAG00000017072	CHD6	99	80.221	Sarcophilus_harrisii
ENSEASG00005023433	CHD6	94	88.109	ENSSFOG00015012920	chd6	81	73.937	Scleropages_formosus
ENSEASG00005023433	CHD6	84	99.563	ENSSARG00000002615	-	60	100.000	Sorex_araneus
ENSEASG00005023433	CHD6	95	97.683	ENSSSCG00000007360	CHD6	99	92.324	Sus_scrofa
ENSEASG00005023433	CHD6	95	93.822	ENSTGUG00000003179	CHD6	99	73.348	Taeniopygia_guttata
ENSEASG00005023433	CHD6	95	84.200	ENSTNIG00000017487	chd6	82	77.231	Tetraodon_nigroviridis
ENSEASG00005023433	CHD6	95	95.560	ENSTTRG00000013438	CHD6	99	89.086	Tursiops_truncatus
ENSEASG00005023433	CHD6	100	97.431	ENSUAMG00000024036	CHD6	100	97.431	Ursus_americanus
ENSEASG00005023433	CHD6	100	97.431	ENSUMAG00000002017	CHD6	100	97.431	Ursus_maritimus
ENSEASG00005023433	CHD6	93	92.126	ENSVPAG00000007941	CHD6	95	89.524	Vicugna_pacos
ENSEASG00005023433	CHD6	95	97.683	ENSVVUG00000029164	CHD6	99	93.168	Vulpes_vulpes
ENSEASG00005023433	CHD6	95	76.118	ENSXETG00000021445	chd6	90	69.937	Xenopus_tropicalis