EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSEBUG00000000992 (Gene tree)
Gene ID
-
Gene Symbol
pabpc4 (1 of many)
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein%2C cytoplasmic 4 (inducible form)
Gene Type
protein_coding
Species
Eptatretus_burgeri
Status
putative
Strand
Minus strand
Length
32671 bases
Position
chrFYBX02010590.1:1557547-1590217
Accession
ZDB-GENE-030131-9663
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSEBUP00000001067PABPPF00658.188.2e-3211
ENSEBUP00000001035PABPPF00658.189.2e-3211
ENSEBUP00000001050PABPPF00658.186.4e-2811
ENSEBUP00000001067RRM_1PF00076.221.1e-9114
ENSEBUP00000001067RRM_1PF00076.221.1e-9124
ENSEBUP00000001067RRM_1PF00076.221.1e-9134
ENSEBUP00000001067RRM_1PF00076.221.1e-9144
ENSEBUP00000001035RRM_1PF00076.221.6e-9114
ENSEBUP00000001035RRM_1PF00076.221.6e-9124
ENSEBUP00000001035RRM_1PF00076.221.6e-9134
ENSEBUP00000001035RRM_1PF00076.221.6e-9144
ENSEBUP00000001050RRM_1PF00076.221.7e-9114
ENSEBUP00000001050RRM_1PF00076.221.7e-9124
ENSEBUP00000001050RRM_1PF00076.221.7e-9134
ENSEBUP00000001050RRM_1PF00076.221.7e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSEBUT00000001383-2695-ENSEBUP00000001067588 (aa)--
ENSEBUT00000001349-2949-ENSEBUP00000001035626 (aa)--
ENSEBUT00000001365-3013-ENSEBUP00000001050625 (aa)--
Gene Model
Click here to download ENSEBUG00000000992's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000000992's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSEBUG00000000992pabpc46739.535ENSEBUG00000007835-6539.535
ENSEBUG00000000992pabpc46633.333ENSEBUG00000000352-9833.333
ENSEBUG00000000992pabpc49876.252ENSEBUG00000013782pabpc49976.592
ENSEBUG00000000992pabpc45733.974ENSEBUG00000009297HNRNPA05233.113
ENSEBUG00000000992pabpc46138.372ENSEBUG00000008128-5638.372
ENSEBUG00000000992pabpc46237.349ENSEBUG00000008179-8737.349
ENSEBUG00000000992pabpc46632.716ENSEBUG00000016570HNRNPA05831.481
ENSEBUG00000000992pabpc46137.975ENSEBUG00000001843tia1l5537.975
ENSEBUG00000000992pabpc45535.443ENSEBUG00000016008elavl29735.443
ENSEBUG00000000992pabpc45430.000ENSEBUG00000014083-5432.331
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSEBUG00000000992pabpc49980.346ENSG00000090621PABPC49996.396Homo_sapiens
ENSEBUG00000000992pabpc49976.153ENSAPOG00000001161pabpc49876.471Acanthochromis_polyacanthus
ENSEBUG00000000992pabpc49980.130ENSAMEG00000011535-9973.222Ailuropoda_melanoleuca
ENSEBUG00000000992pabpc49847.315ENSAMEG00000015083-9747.315Ailuropoda_melanoleuca
ENSEBUG00000000992pabpc410075.873ENSACIG00000023343pabpc49976.190Amphilophus_citrinellus
ENSEBUG00000000992pabpc49976.153ENSAOCG00000021529pabpc49876.471Amphiprion_ocellaris
ENSEBUG00000000992pabpc49976.153ENSAPEG00000019196pabpc49876.471Amphiprion_percula
ENSEBUG00000000992pabpc410076.545ENSATEG00000007402pabpc49976.862Anabas_testudineus
ENSEBUG00000000992pabpc49877.634ENSAPLG00000009729-9878.317Anas_platyrhynchos
ENSEBUG00000000992pabpc49875.224ENSACAG00000002544PABPC49975.224Anolis_carolinensis
ENSEBUG00000000992pabpc49980.346ENSANAG00000025079PABPC49976.582Aotus_nancymaae
ENSEBUG00000000992pabpc49976.312ENSACLG00000019558pabpc49876.630Astatotilapia_calliptera
ENSEBUG00000000992pabpc49972.045ENSAMXG00000018779pabpc49872.364Astyanax_mexicanus
ENSEBUG00000000992pabpc46282.635ENSBTAG00000048536-9382.635Bos_taurus
ENSEBUG00000000992pabpc410074.729ENSBTAG00000017125PABPC49974.729Bos_taurus
ENSEBUG00000000992pabpc49980.346ENSCJAG00000002512-9976.582Callithrix_jacchus
ENSEBUG00000000992pabpc47865.438ENSCJAG00000045953-8566.667Callithrix_jacchus
ENSEBUG00000000992pabpc49878.697ENSCAFG00000003081PABPC49976.741Canis_familiaris
ENSEBUG00000000992pabpc49980.346ENSCAFG00020004161PABPC49973.374Canis_lupus_dingo
ENSEBUG00000000992pabpc49980.130ENSCHIG00000019398-9973.222Capra_hircus
ENSEBUG00000000992pabpc410059.155ENSCHIG00000023385-9959.155Capra_hircus
ENSEBUG00000000992pabpc410080.346ENSTSYG00000006532PABPC49976.582Carlito_syrichta
ENSEBUG00000000992pabpc49980.435ENSCAPG00000015984PABPC49977.205Cavia_aperea
ENSEBUG00000000992pabpc49980.562ENSCPOG00000009552PABPC49976.582Cavia_porcellus
ENSEBUG00000000992pabpc49980.346ENSCCAG00000037306PABPC49976.424Cebus_capucinus
ENSEBUG00000000992pabpc49980.346ENSCATG00000042164PABPC49976.582Cercocebus_atys
ENSEBUG00000000992pabpc49980.346ENSCLAG00000011899PABPC49976.266Chinchilla_lanigera
ENSEBUG00000000992pabpc49980.346ENSCSAG00000001135PABPC49973.222Chlorocebus_sabaeus
ENSEBUG00000000992pabpc48981.471ENSCHOG00000005327PABPC48079.737Choloepus_hoffmanni
ENSEBUG00000000992pabpc49978.185ENSCPBG00000001038PABPC49978.185Chrysemys_picta_bellii
ENSEBUG00000000992pabpc49880.617ENSCANG00000034177PABPC49976.726Colobus_angolensis_palliatus
ENSEBUG00000000992pabpc49980.508ENSCGRG00001018166Pabpc49877.331Cricetulus_griseus_chok1gshd
ENSEBUG00000000992pabpc49877.325ENSCGRG00000009777Pabpc49877.488Cricetulus_griseus_crigri
ENSEBUG00000000992pabpc410075.714ENSCSEG00000000130pabpc49976.032Cynoglossus_semilaevis
ENSEBUG00000000992pabpc49976.613ENSCVAG00000019246pabpc49976.935Cyprinodon_variegatus
ENSEBUG00000000992pabpc49976.923ENSDARG00000059259pabpc49977.575Danio_rerio
ENSEBUG00000000992pabpc49880.508ENSDNOG00000018444-9974.866Dasypus_novemcinctus
ENSEBUG00000000992pabpc410074.729ENSDORG00000011581Pabpc49975.000Dipodomys_ordii
ENSEBUG00000000992pabpc410090.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSEBUG00000000992pabpc48649.071ENSETEG00000009172-9948.905Echinops_telfairi
ENSEBUG00000000992pabpc49980.346ENSEASG00005014119PABPC49973.374Equus_asinus_asinus
ENSEBUG00000000992pabpc49980.346ENSECAG00000009396PABPC49973.374Equus_caballus
ENSEBUG00000000992pabpc49880.130ENSEEUG00000002962PABPC49973.979Erinaceus_europaeus
ENSEBUG00000000992pabpc49975.439ENSELUG00000003195pabpc49775.835Esox_lucius
ENSEBUG00000000992pabpc49980.346ENSFCAG00000015254-9976.741Felis_catus
ENSEBUG00000000992pabpc49976.837ENSFALG00000000543PABPC49978.025Ficedula_albicollis
ENSEBUG00000000992pabpc49045.319ENSFDAG00000010581-9944.905Fukomys_damarensis
ENSEBUG00000000992pabpc49980.346ENSFDAG00000020016-9973.525Fukomys_damarensis
ENSEBUG00000000992pabpc49976.630ENSFHEG00000007548pabpc49976.948Fundulus_heteroclitus
ENSEBUG00000000992pabpc49975.762ENSGMOG00000019025pabpc49776.083Gadus_morhua
ENSEBUG00000000992pabpc49977.671ENSGALG00000003800PABPC49978.344Gallus_gallus
ENSEBUG00000000992pabpc49980.410ENSGAFG00000018195pabpc49592.222Gambusia_affinis
ENSEBUG00000000992pabpc410075.238ENSGACG00000007179pabpc49975.556Gasterosteus_aculeatus
ENSEBUG00000000992pabpc49978.185ENSGAGG00000001888PABPC49978.185Gopherus_agassizii
ENSEBUG00000000992pabpc49980.346ENSGGOG00000004002PABPC49976.582Gorilla_gorilla
ENSEBUG00000000992pabpc49976.312ENSHBUG00000020206pabpc49876.630Haplochromis_burtoni
ENSEBUG00000000992pabpc49980.346ENSHGLG00000011162PABPC49976.424Heterocephalus_glaber_female
ENSEBUG00000000992pabpc410075.587ENSHGLG00100001580PABPC49976.424Heterocephalus_glaber_male
ENSEBUG00000000992pabpc49976.677ENSHCOG00000012694pabpc49876.997Hippocampus_comes
ENSEBUG00000000992pabpc49977.207ENSIPUG00000016620pabpc49977.179Ictalurus_punctatus
ENSEBUG00000000992pabpc410076.358ENSSTOG00000010416PABPC49976.677Ictidomys_tridecemlineatus
ENSEBUG00000000992pabpc49977.049ENSJJAG00000007781Pabpc49974.264Jaculus_jaculus
ENSEBUG00000000992pabpc410077.722ENSKMAG00000013597pabpc49977.722Kryptolebias_marmoratus
ENSEBUG00000000992pabpc49975.637ENSLBEG00000013654pabpc49875.955Labrus_bergylta
ENSEBUG00000000992pabpc49977.389ENSLACG00000011907PABPC49977.901Latimeria_chalumnae
ENSEBUG00000000992pabpc49976.038ENSLOCG00000001877pabpc49876.358Lepisosteus_oculatus
ENSEBUG00000000992pabpc49980.346ENSLAFG00000000151PABPC49976.837Loxodonta_africana
ENSEBUG00000000992pabpc49980.346ENSMFAG00000041481PABPC49976.582Macaca_fascicularis
ENSEBUG00000000992pabpc49980.346ENSMMUG00000007497PABPC49973.222Macaca_mulatta
ENSEBUG00000000992pabpc49980.346ENSMNEG00000043054PABPC49976.582Macaca_nemestrina
ENSEBUG00000000992pabpc49980.346ENSMLEG00000040716PABPC49976.582Mandrillus_leucophaeus
ENSEBUG00000000992pabpc410075.873ENSMAMG00000010025pabpc49976.190Mastacembelus_armatus
ENSEBUG00000000992pabpc49976.570ENSMZEG00005006141pabpc49876.630Maylandia_zebra
ENSEBUG00000000992pabpc49873.208ENSMGAG00000005408PABPC49973.846Meleagris_gallopavo
ENSEBUG00000000992pabpc47565.829ENSMAUG00000001295-9767.308Mesocricetus_auratus
ENSEBUG00000000992pabpc48189.583ENSMAUG00000019763-8289.583Mesocricetus_auratus
ENSEBUG00000000992pabpc46178.947ENSMAUG00000004089-9278.947Mesocricetus_auratus
ENSEBUG00000000992pabpc49076.071ENSMICG00000016633-10076.292Microcebus_murinus
ENSEBUG00000000992pabpc49970.307ENSMICG00000036729-9970.307Microcebus_murinus
ENSEBUG00000000992pabpc49980.562ENSMOCG00000006763Pabpc49976.935Microtus_ochrogaster
ENSEBUG00000000992pabpc49976.519ENSMMOG00000002363pabpc49876.847Mola_mola
ENSEBUG00000000992pabpc46669.811ENSMODG00000019847-6869.811Monodelphis_domestica
ENSEBUG00000000992pabpc49973.806ENSMODG00000017657-9974.006Monodelphis_domestica
ENSEBUG00000000992pabpc46866.755ENSMODG00000018051-9766.755Monodelphis_domestica
ENSEBUG00000000992pabpc410076.032ENSMALG00000011017pabpc49976.349Monopterus_albus
ENSEBUG00000000992pabpc49979.698MGP_CAROLIEiJ_G0026435-10095.745Mus_caroli
ENSEBUG00000000992pabpc49867.864MGP_CAROLIEiJ_G0024864-9867.864Mus_caroli
ENSEBUG00000000992pabpc49980.508ENSMUSG00000011257Pabpc410094.048Mus_musculus
ENSEBUG00000000992pabpc49780.396MGP_PahariEiJ_G0028765Pabpc410096.454Mus_pahari
ENSEBUG00000000992pabpc49780.508MGP_SPRETEiJ_G0027415Pabpc410096.454Mus_spretus
ENSEBUG00000000992pabpc49644.463ENSMPUG00000006836-10044.463Mustela_putorius_furo
ENSEBUG00000000992pabpc49980.346ENSMPUG00000014414-9973.374Mustela_putorius_furo
ENSEBUG00000000992pabpc49977.010ENSMLUG00000012068PABPC49977.492Myotis_lucifugus
ENSEBUG00000000992pabpc410076.198ENSNGAG00000018292Pabpc49976.677Nannospalax_galili
ENSEBUG00000000992pabpc47076.786ENSNBRG00000010047-7276.786Neolamprologus_brichardi
ENSEBUG00000000992pabpc46390.865ENSNBRG00000009708pabpc49890.865Neolamprologus_brichardi
ENSEBUG00000000992pabpc410075.862ENSNLEG00000011928PABPC49976.582Nomascus_leucogenys
ENSEBUG00000000992pabpc48985.714ENSOPRG00000011984PABPC48585.714Ochotona_princeps
ENSEBUG00000000992pabpc49865.319ENSODEG00000017434-9865.745Octodon_degus
ENSEBUG00000000992pabpc49980.130ENSODEG00000006592-9975.791Octodon_degus
ENSEBUG00000000992pabpc45782.143ENSODEG00000013457-10082.143Octodon_degus
ENSEBUG00000000992pabpc49976.236ENSONIG00000008176pabpc49876.555Oreochromis_niloticus
ENSEBUG00000000992pabpc49977.707ENSOANG00000010001PABPC49977.707Ornithorhynchus_anatinus
ENSEBUG00000000992pabpc49680.346ENSOCUG00000000562PABPC48873.041Oryctolagus_cuniculus
ENSEBUG00000000992pabpc410076.228ENSORLG00000017479pabpc49884.568Oryzias_latipes
ENSEBUG00000000992pabpc410076.228ENSORLG00020018644pabpc49876.545Oryzias_latipes_hni
ENSEBUG00000000992pabpc410076.070ENSORLG00015015042pabpc49484.308Oryzias_latipes_hsok
ENSEBUG00000000992pabpc48989.189ENSOMEG00000014410pabpc49877.266Oryzias_melastigma
ENSEBUG00000000992pabpc410074.652ENSOGAG00000004067PABPC49974.343Otolemur_garnettii
ENSEBUG00000000992pabpc49980.130ENSOARG00000020060PABPC49973.222Ovis_aries
ENSEBUG00000000992pabpc49980.346ENSPPAG00000043625PABPC49976.582Pan_paniscus
ENSEBUG00000000992pabpc49980.346ENSPPRG00000024727PABPC49976.741Panthera_pardus
ENSEBUG00000000992pabpc49980.346ENSPTIG00000005829PABPC49976.741Panthera_tigris_altaica
ENSEBUG00000000992pabpc49980.346ENSPTRG00000000573PABPC49976.582Pan_troglodytes
ENSEBUG00000000992pabpc49980.346ENSPANG00000009484PABPC49976.582Papio_anubis
ENSEBUG00000000992pabpc49976.557ENSPKIG00000025356pabpc49876.557Paramormyrops_kingsleyae
ENSEBUG00000000992pabpc49978.344ENSPSIG00000016892PABPC49978.344Pelodiscus_sinensis
ENSEBUG00000000992pabpc49977.349ENSPMGG00000009073pabpc49878.020Periophthalmus_magnuspinnatus
ENSEBUG00000000992pabpc49980.562ENSPEMG00000023569-9877.070Peromyscus_maniculatus_bairdii
ENSEBUG00000000992pabpc49974.204ENSPEMG00000024193-9874.404Peromyscus_maniculatus_bairdii
ENSEBUG00000000992pabpc49071.575ENSPMAG00000002836pabpc410072.759Petromyzon_marinus
ENSEBUG00000000992pabpc49782.402ENSPMAG00000007885pabpc49982.724Petromyzon_marinus
ENSEBUG00000000992pabpc49780.227ENSPCIG00000020674PABPC49880.227Phascolarctos_cinereus
ENSEBUG00000000992pabpc49975.917ENSPFOG00000002682pabpc49976.555Poecilia_formosa
ENSEBUG00000000992pabpc49975.835ENSPLAG00000010112pabpc49976.471Poecilia_latipinna
ENSEBUG00000000992pabpc49975.719ENSPMEG00000019739pabpc49976.274Poecilia_mexicana
ENSEBUG00000000992pabpc410075.714ENSPREG00000001589pabpc49976.032Poecilia_reticulata
ENSEBUG00000000992pabpc49980.346ENSPPYG00000001506PABPC49973.222Pongo_abelii
ENSEBUG00000000992pabpc49977.049ENSPCAG00000003341PABPC49969.440Procavia_capensis
ENSEBUG00000000992pabpc49980.346ENSPCOG00000023725-9976.582Propithecus_coquereli
ENSEBUG00000000992pabpc49963.084ENSPCOG00000025882-9763.084Propithecus_coquereli
ENSEBUG00000000992pabpc49878.643ENSPVAG00000002187PABPC49971.644Pteropus_vampyrus
ENSEBUG00000000992pabpc49976.312ENSPNYG00000006134pabpc49876.630Pundamilia_nyererei
ENSEBUG00000000992pabpc49976.935ENSPNAG00000024355pabpc49777.258Pygocentrus_nattereri
ENSEBUG00000000992pabpc49972.699ENSRNOG00000028592AABR07035074.19972.969Rattus_norvegicus
ENSEBUG00000000992pabpc49974.571ENSRNOG00000015642Pabpc49974.844Rattus_norvegicus
ENSEBUG00000000992pabpc49980.346ENSRBIG00000039761PABPC49976.582Rhinopithecus_bieti
ENSEBUG00000000992pabpc49980.346ENSRROG00000033355PABPC49976.582Rhinopithecus_roxellana
ENSEBUG00000000992pabpc49980.346ENSSBOG00000026193PABPC49976.424Saimiri_boliviensis_boliviensis
ENSEBUG00000000992pabpc49977.047ENSSHAG00000018139PABPC49977.229Sarcophilus_harrisii
ENSEBUG00000000992pabpc49976.606ENSSFOG00015023514pabpc49976.606Scleropages_formosus
ENSEBUG00000000992pabpc49976.677ENSSMAG00000009007pabpc49876.997Scophthalmus_maximus
ENSEBUG00000000992pabpc410076.032ENSSDUG00000012683pabpc49976.349Seriola_dumerili
ENSEBUG00000000992pabpc410076.032ENSSLDG00000013025pabpc49976.349Seriola_lalandi_dorsalis
ENSEBUG00000000992pabpc49975.806ENSSARG00000000310PABPC49966.868Sorex_araneus
ENSEBUG00000000992pabpc49977.331ENSSPUG00000003204PABPC49977.974Sphenodon_punctatus
ENSEBUG00000000992pabpc410076.780ENSSPAG00000009252pabpc49976.667Stegastes_partitus
ENSEBUG00000000992pabpc49980.346ENSSSCG00000003660-9976.899Sus_scrofa
ENSEBUG00000000992pabpc48840.934ENSSSCG00000036170-9441.098Sus_scrofa
ENSEBUG00000000992pabpc49973.860ENSTGUG00000001266PABPC49974.052Taeniopygia_guttata
ENSEBUG00000000992pabpc49976.236ENSTRUG00000005907pabpc49876.555Takifugu_rubripes
ENSEBUG00000000992pabpc49973.496ENSTNIG00000016902pabpc49873.496Tetraodon_nigroviridis
ENSEBUG00000000992pabpc49877.049ENSTBEG00000009035PABPC49962.752Tupaia_belangeri
ENSEBUG00000000992pabpc49877.049ENSTTRG00000014340PABPC49961.745Tursiops_truncatus
ENSEBUG00000000992pabpc49980.346ENSUAMG00000000303PABPC49976.741Ursus_americanus
ENSEBUG00000000992pabpc410080.000ENSUMAG00000019585PABPC49980.000Ursus_maritimus
ENSEBUG00000000992pabpc47365.487ENSVPAG00000010041PABPC47265.487Vicugna_pacos
ENSEBUG00000000992pabpc49980.346ENSVVUG00000005215PABPC49976.741Vulpes_vulpes
ENSEBUG00000000992pabpc46692.262ENSXETG00000027221-10092.262Xenopus_tropicalis
ENSEBUG00000000992pabpc410072.986ENSXETG00000010946pabpc49973.502Xenopus_tropicalis
ENSEBUG00000000992pabpc49978.750ENSXCOG00000013190pabpc49682.547Xiphophorus_couchianus
ENSEBUG00000000992pabpc49976.153ENSXMAG00000019007pabpc49976.471Xiphophorus_maculatus

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