EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000001237 (Gene tree)
Gene ID: -
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: Sjogren syndrome antigen B (autoantigen La)
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 55836 bases
Position: chrFYBX02010015.1:373546-429381
Accession: ZDB-GENE-030131-223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000001436	RRM_1	PF00076.22	6e-14	1	1
ENSEBUP00000001412	RRM_1	PF00076.22	6.7e-14	1	1
ENSEBUP00000001398	RRM_1	PF00076.22	7e-14	1	1
ENSEBUP00000001436	RRM_3	PF08777.11	1.4e-22	1	1
ENSEBUP00000001412	RRM_3	PF08777.11	2.3e-22	1	1
ENSEBUP00000001398	RRM_3	PF08777.11	2.6e-22	1	1
ENSEBUP00000001436	La	PF05383.17	1e-22	1	1
ENSEBUP00000001412	La	PF05383.17	1.1e-22	1	1
ENSEBUP00000001398	La	PF05383.17	1.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000001739	-	3316	-	ENSEBUP00000001412	398 (aa)	-	-
ENSEBUT00000001764	-	2123	-	ENSEBUP00000001436	384 (aa)	-	-
ENSEBUT00000001724	-	3435	-	ENSEBUP00000001398	411 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000001237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000001237's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000001237	ssb	96	48.346	ENSG00000138385	SSB	100	54.167	Homo_sapiens
ENSEBUG00000001237	ssb	93	46.049	ENSAPOG00000003448	ssb	95	45.504	Acanthochromis_polyacanthus
ENSEBUG00000001237	ssb	96	46.192	ENSAMEG00000010507	SSB	96	46.192	Ailuropoda_melanoleuca
ENSEBUG00000001237	ssb	92	46.301	ENSACIG00000001738	ssb	95	45.628	Amphilophus_citrinellus
ENSEBUG00000001237	ssb	83	47.692	ENSAOCG00000020398	ssb	85	47.561	Amphiprion_ocellaris
ENSEBUG00000001237	ssb	95	45.067	ENSAPEG00000020395	ssb	95	46.322	Amphiprion_percula
ENSEBUG00000001237	ssb	97	44.584	ENSATEG00000016884	ssb	99	44.584	Anabas_testudineus
ENSEBUG00000001237	ssb	94	44.697	ENSAPLG00000006109	SSB	94	46.005	Anas_platyrhynchos
ENSEBUG00000001237	ssb	91	47.175	ENSACAG00000017008	SSB	79	50.470	Anolis_carolinensis
ENSEBUG00000001237	ssb	96	43.478	ENSANAG00000027195	-	96	43.478	Aotus_nancymaae
ENSEBUG00000001237	ssb	95	44.205	ENSACLG00000010798	ssb	99	43.767	Astatotilapia_calliptera
ENSEBUG00000001237	ssb	83	49.383	ENSAMXG00000012606	ssb	94	45.939	Astyanax_mexicanus
ENSEBUG00000001237	ssb	96	48.082	ENSBTAG00000008716	SSB	96	47.826	Bos_taurus
ENSEBUG00000001237	ssb	79	31.410	WBGene00016653	C44E4.4	78	32.698	Caenorhabditis_elegans
ENSEBUG00000001237	ssb	96	47.959	ENSCJAG00000045073	SSB	96	47.704	Callithrix_jacchus
ENSEBUG00000001237	ssb	96	47.837	ENSCAFG00000012418	SSB	96	47.583	Canis_familiaris
ENSEBUG00000001237	ssb	96	47.837	ENSCAFG00020002900	SSB	96	47.583	Canis_lupus_dingo
ENSEBUG00000001237	ssb	87	48.235	ENSCHIG00000022196	-	81	49.068	Capra_hircus
ENSEBUG00000001237	ssb	96	48.214	ENSCHIG00000022624	-	96	47.959	Capra_hircus
ENSEBUG00000001237	ssb	96	47.194	ENSTSYG00000000097	SSB	96	47.959	Carlito_syrichta
ENSEBUG00000001237	ssb	96	48.698	ENSCPOG00000003338	SSB	96	48.438	Cavia_porcellus
ENSEBUG00000001237	ssb	96	48.724	ENSCCAG00000035147	SSB	96	48.469	Cebus_capucinus
ENSEBUG00000001237	ssb	69	46.503	ENSCATG00000036701	SSB	82	46.154	Cercocebus_atys
ENSEBUG00000001237	ssb	96	36.667	ENSCATG00000042909	-	95	36.667	Cercocebus_atys
ENSEBUG00000001237	ssb	96	48.082	ENSCLAG00000015617	-	96	47.826	Chinchilla_lanigera
ENSEBUG00000001237	ssb	96	48.214	ENSCSAG00000015200	SSB	86	47.959	Chlorocebus_sabaeus
ENSEBUG00000001237	ssb	95	44.103	ENSCSAG00000018390	-	98	44.103	Chlorocebus_sabaeus
ENSEBUG00000001237	ssb	96	48.214	ENSCHOG00000007763	SSB	96	47.959	Choloepus_hoffmanni
ENSEBUG00000001237	ssb	91	49.296	ENSCPBG00000006519	SSB	87	50.559	Chrysemys_picta_bellii
ENSEBUG00000001237	ssb	96	48.214	ENSCANG00000027695	SSB	96	47.959	Colobus_angolensis_palliatus
ENSEBUG00000001237	ssb	95	43.264	ENSCANG00000033240	-	96	43.264	Colobus_angolensis_palliatus
ENSEBUG00000001237	ssb	95	39.566	ENSCANG00000028838	-	87	39.674	Colobus_angolensis_palliatus
ENSEBUG00000001237	ssb	91	45.682	ENSCGRG00001024831	Ssb	96	44.643	Cricetulus_griseus_chok1gshd
ENSEBUG00000001237	ssb	91	45.682	ENSCGRG00000005387	Ssb	96	44.643	Cricetulus_griseus_crigri
ENSEBUG00000001237	ssb	96	43.112	ENSCSEG00000011599	ssb	98	44.133	Cynoglossus_semilaevis
ENSEBUG00000001237	ssb	96	44.757	ENSCVAG00000021558	ssb	99	44.332	Cyprinodon_variegatus
ENSEBUG00000001237	ssb	92	47.500	ENSDARG00000029252	ssb	93	46.457	Danio_rerio
ENSEBUG00000001237	ssb	96	47.826	ENSDNOG00000013450	SSB	96	47.570	Dasypus_novemcinctus
ENSEBUG00000001237	ssb	96	46.667	ENSDORG00000005543	Ssb	96	46.667	Dipodomys_ordii
ENSEBUG00000001237	ssb	91	33.427	FBgn0011638	La	72	35.764	Drosophila_melanogaster
ENSEBUG00000001237	ssb	96	48.214	ENSEASG00005022835	SSB	96	47.959	Equus_asinus_asinus
ENSEBUG00000001237	ssb	96	48.214	ENSECAG00000018495	SSB	96	47.959	Equus_caballus
ENSEBUG00000001237	ssb	76	42.177	ENSEEUG00000008077	SSB	75	42.177	Erinaceus_europaeus
ENSEBUG00000001237	ssb	87	46.608	ENSELUG00000020929	ssb	91	46.301	Esox_lucius
ENSEBUG00000001237	ssb	96	47.583	ENSFCAG00000011601	SSB	96	47.328	Felis_catus
ENSEBUG00000001237	ssb	92	47.339	ENSFALG00000000930	SSB	88	48.739	Ficedula_albicollis
ENSEBUG00000001237	ssb	96	48.338	ENSFDAG00000000598	SSB	96	48.082	Fukomys_damarensis
ENSEBUG00000001237	ssb	66	42.966	ENSFHEG00000003268	ssb	93	42.525	Fundulus_heteroclitus
ENSEBUG00000001237	ssb	96	44.279	ENSGMOG00000002664	ssb	99	44.557	Gadus_morhua
ENSEBUG00000001237	ssb	94	47.090	ENSGALG00000009677	SSB	91	47.745	Gallus_gallus
ENSEBUG00000001237	ssb	96	45.178	ENSGAFG00000002749	ssb	98	45.477	Gambusia_affinis
ENSEBUG00000001237	ssb	97	40.695	ENSGACG00000005107	ssb	99	42.680	Gasterosteus_aculeatus
ENSEBUG00000001237	ssb	91	48.732	ENSGAGG00000007807	SSB	87	50.000	Gopherus_agassizii
ENSEBUG00000001237	ssb	96	40.816	ENSGGOG00000024891	-	96	40.561	Gorilla_gorilla
ENSEBUG00000001237	ssb	58	43.802	ENSGGOG00000023471	-	97	43.388	Gorilla_gorilla
ENSEBUG00000001237	ssb	81	47.319	ENSHBUG00000006584	ssb	92	44.536	Haplochromis_burtoni
ENSEBUG00000001237	ssb	96	45.867	ENSHGLG00000004478	-	97	45.431	Heterocephalus_glaber_female
ENSEBUG00000001237	ssb	92	46.328	ENSHGLG00000005832	-	96	44.503	Heterocephalus_glaber_female
ENSEBUG00000001237	ssb	96	47.990	ENSHGLG00000017580	-	96	47.487	Heterocephalus_glaber_female
ENSEBUG00000001237	ssb	96	43.557	ENSHGLG00100008767	-	96	43.557	Heterocephalus_glaber_male
ENSEBUG00000001237	ssb	96	47.990	ENSHGLG00100003084	-	96	47.487	Heterocephalus_glaber_male
ENSEBUG00000001237	ssb	92	45.125	ENSHCOG00000019011	ssb	98	43.702	Hippocampus_comes
ENSEBUG00000001237	ssb	95	46.875	ENSIPUG00000003681	SSB	93	46.875	Ictalurus_punctatus
ENSEBUG00000001237	ssb	96	48.593	ENSSTOG00000008416	SSB	96	47.692	Ictidomys_tridecemlineatus
ENSEBUG00000001237	ssb	87	36.705	ENSJJAG00000016250	-	66	46.018	Jaculus_jaculus
ENSEBUG00000001237	ssb	92	41.979	ENSJJAG00000023158	-	76	46.688	Jaculus_jaculus
ENSEBUG00000001237	ssb	96	43.590	ENSKMAG00000017317	ssb	97	43.846	Kryptolebias_marmoratus
ENSEBUG00000001237	ssb	97	43.797	ENSLBEG00000017345	ssb	99	44.304	Labrus_bergylta
ENSEBUG00000001237	ssb	96	48.813	ENSLACG00000014056	SSB	98	46.635	Latimeria_chalumnae
ENSEBUG00000001237	ssb	96	47.342	ENSLOCG00000007933	ssb	97	47.342	Lepisosteus_oculatus
ENSEBUG00000001237	ssb	92	40.896	ENSLAFG00000028909	-	90	40.327	Loxodonta_africana
ENSEBUG00000001237	ssb	75	38.408	ENSLAFG00000026721	-	97	38.276	Loxodonta_africana
ENSEBUG00000001237	ssb	92	45.989	ENSLAFG00000000867	-	96	44.118	Loxodonta_africana
ENSEBUG00000001237	ssb	89	43.605	ENSMFAG00000041478	-	88	44.904	Macaca_fascicularis
ENSEBUG00000001237	ssb	96	48.214	ENSMFAG00000039066	SSB	96	47.959	Macaca_fascicularis
ENSEBUG00000001237	ssb	96	37.113	ENSMMUG00000039889	-	96	37.692	Macaca_mulatta
ENSEBUG00000001237	ssb	96	43.188	ENSMMUG00000011724	-	93	42.526	Macaca_mulatta
ENSEBUG00000001237	ssb	96	48.214	ENSMMUG00000023051	SSB	96	47.959	Macaca_mulatta
ENSEBUG00000001237	ssb	89	43.605	ENSMNEG00000034698	-	88	44.904	Macaca_nemestrina
ENSEBUG00000001237	ssb	96	41.221	ENSMNEG00000028321	SSB	90	48.387	Macaca_nemestrina
ENSEBUG00000001237	ssb	96	37.275	ENSMLEG00000042644	-	95	35.878	Mandrillus_leucophaeus
ENSEBUG00000001237	ssb	96	48.214	ENSMLEG00000035717	SSB	96	47.959	Mandrillus_leucophaeus
ENSEBUG00000001237	ssb	82	48.750	ENSMAMG00000004800	ssb	99	45.363	Mastacembelus_armatus
ENSEBUG00000001237	ssb	95	44.205	ENSMZEG00005005749	ssb	99	43.767	Maylandia_zebra
ENSEBUG00000001237	ssb	91	48.732	ENSMGAG00000010328	SSB	95	55.102	Meleagris_gallopavo
ENSEBUG00000001237	ssb	95	44.330	ENSMICG00000033304	-	94	43.814	Microcebus_murinus
ENSEBUG00000001237	ssb	96	48.214	ENSMICG00000028252	-	96	48.980	Microcebus_murinus
ENSEBUG00000001237	ssb	92	46.978	ENSMODG00000008227	-	78	50.000	Monodelphis_domestica
ENSEBUG00000001237	ssb	94	39.118	ENSMODG00000007027	-	89	39.394	Monodelphis_domestica
ENSEBUG00000001237	ssb	94	43.526	ENSMODG00000019271	-	89	43.251	Monodelphis_domestica
ENSEBUG00000001237	ssb	83	49.057	ENSMALG00000008045	ssb	87	47.645	Monopterus_albus
ENSEBUG00000001237	ssb	87	48.071	MGP_CAROLIEiJ_G0023629	-	93	52.326	Mus_caroli
ENSEBUG00000001237	ssb	87	47.774	ENSMUSG00000068882	Ssb	93	52.326	Mus_musculus
ENSEBUG00000001237	ssb	91	46.518	MGP_PahariEiJ_G0025081	-	93	52.907	Mus_pahari
ENSEBUG00000001237	ssb	87	47.774	MGP_SPRETEiJ_G0024551	Ssb	93	52.326	Mus_spretus
ENSEBUG00000001237	ssb	96	48.214	ENSMPUG00000000785	SSB	96	47.959	Mustela_putorius_furo
ENSEBUG00000001237	ssb	96	46.040	ENSMLUG00000016316	SSB	97	45.050	Myotis_lucifugus
ENSEBUG00000001237	ssb	83	46.584	ENSNBRG00000012661	ssb	99	43.799	Neolamprologus_brichardi
ENSEBUG00000001237	ssb	96	48.214	ENSNLEG00000004958	SSB	96	47.959	Nomascus_leucogenys
ENSEBUG00000001237	ssb	83	39.308	ENSNLEG00000028754	-	80	38.253	Nomascus_leucogenys
ENSEBUG00000001237	ssb	64	50.806	ENSMEUG00000001650	-	100	50.806	Notamacropus_eugenii
ENSEBUG00000001237	ssb	69	36.749	ENSOPRG00000008475	-	98	37.456	Ochotona_princeps
ENSEBUG00000001237	ssb	91	46.995	ENSODEG00000004202	-	98	45.902	Octodon_degus
ENSEBUG00000001237	ssb	82	47.059	ENSONIG00000008776	ssb	91	45.055	Oreochromis_niloticus
ENSEBUG00000001237	ssb	95	47.179	ENSOANG00000008543	SSB	96	47.583	Ornithorhynchus_anatinus
ENSEBUG00000001237	ssb	96	47.583	ENSOCUG00000010396	SSB	96	47.315	Oryctolagus_cuniculus
ENSEBUG00000001237	ssb	96	44.529	ENSORLG00000017208	ssb	99	43.860	Oryzias_latipes
ENSEBUG00000001237	ssb	82	47.664	ENSORLG00020022574	ssb	99	44.110	Oryzias_latipes_hni
ENSEBUG00000001237	ssb	96	45.038	ENSORLG00015016592	ssb	99	44.361	Oryzias_latipes_hsok
ENSEBUG00000001237	ssb	97	45.063	ENSOMEG00000003193	ssb	99	45.063	Oryzias_melastigma
ENSEBUG00000001237	ssb	96	45.966	ENSOGAG00000029768	SSB	96	44.499	Otolemur_garnettii
ENSEBUG00000001237	ssb	96	46.939	ENSOARG00000002906	SSB	96	47.704	Ovis_aries
ENSEBUG00000001237	ssb	96	48.346	ENSPPAG00000042673	SSB	96	48.092	Pan_paniscus
ENSEBUG00000001237	ssb	96	38.520	ENSPPAG00000032427	-	93	52.066	Pan_paniscus
ENSEBUG00000001237	ssb	95	39.433	ENSPPAG00000006189	-	91	41.193	Pan_paniscus
ENSEBUG00000001237	ssb	96	47.583	ENSPPRG00000006599	SSB	96	47.328	Panthera_pardus
ENSEBUG00000001237	ssb	96	47.583	ENSPTIG00000011021	SSB	94	47.328	Panthera_tigris_altaica
ENSEBUG00000001237	ssb	96	48.346	ENSPTRG00000012620	SSB	96	48.092	Pan_troglodytes
ENSEBUG00000001237	ssb	96	37.887	ENSPTRG00000042880	-	96	37.887	Pan_troglodytes
ENSEBUG00000001237	ssb	86	38.671	ENSPANG00000034126	-	77	40.312	Papio_anubis
ENSEBUG00000001237	ssb	92	37.677	ENSPANG00000031877	-	86	36.639	Papio_anubis
ENSEBUG00000001237	ssb	96	48.214	ENSPANG00000007440	SSB	96	47.959	Papio_anubis
ENSEBUG00000001237	ssb	97	45.707	ENSPKIG00000019325	ssb	99	46.900	Paramormyrops_kingsleyae
ENSEBUG00000001237	ssb	91	49.014	ENSPSIG00000002265	SSB	81	50.559	Pelodiscus_sinensis
ENSEBUG00000001237	ssb	84	42.515	ENSPMGG00000020075	ssb	89	42.814	Periophthalmus_magnuspinnatus
ENSEBUG00000001237	ssb	82	50.000	ENSPMAG00000002982	ssb	89	45.953	Petromyzon_marinus
ENSEBUG00000001237	ssb	94	47.826	ENSPCIG00000028591	-	96	46.292	Phascolarctos_cinereus
ENSEBUG00000001237	ssb	96	45.802	ENSPFOG00000009650	ssb	98	46.310	Poecilia_formosa
ENSEBUG00000001237	ssb	96	45.524	ENSPLAG00000020498	ssb	98	45.823	Poecilia_latipinna
ENSEBUG00000001237	ssb	96	45.038	ENSPMEG00000001051	ssb	98	46.056	Poecilia_mexicana
ENSEBUG00000001237	ssb	94	45.822	ENSPREG00000003708	ssb	97	46.277	Poecilia_reticulata
ENSEBUG00000001237	ssb	96	48.214	ENSPPYG00000012919	SSB	96	47.959	Pongo_abelii
ENSEBUG00000001237	ssb	92	47.340	ENSPCAG00000010276	SSB	98	47.340	Procavia_capensis
ENSEBUG00000001237	ssb	96	41.071	ENSPCOG00000023189	-	96	41.837	Propithecus_coquereli
ENSEBUG00000001237	ssb	95	46.114	ENSPCOG00000015741	-	95	46.632	Propithecus_coquereli
ENSEBUG00000001237	ssb	89	48.256	ENSPVAG00000006615	SSB	89	50.321	Pteropus_vampyrus
ENSEBUG00000001237	ssb	95	44.205	ENSPNYG00000006444	ssb	99	43.767	Pundamilia_nyererei
ENSEBUG00000001237	ssb	92	47.645	ENSPNAG00000011708	ssb	95	46.939	Pygocentrus_nattereri
ENSEBUG00000001237	ssb	92	45.556	ENSRNOG00000011606	AABR07061825.1	90	45.278	Rattus_norvegicus
ENSEBUG00000001237	ssb	92	45.308	ENSRNOG00000007998	Ssb	77	48.598	Rattus_norvegicus
ENSEBUG00000001237	ssb	96	42.250	ENSRBIG00000041972	SSB	96	42.500	Rhinopithecus_bieti
ENSEBUG00000001237	ssb	96	34.184	ENSRBIG00000029918	-	95	34.184	Rhinopithecus_bieti
ENSEBUG00000001237	ssb	91	40.970	ENSRBIG00000041232	-	97	40.970	Rhinopithecus_bieti
ENSEBUG00000001237	ssb	87	44.847	ENSRBIG00000041608	-	96	44.382	Rhinopithecus_bieti
ENSEBUG00000001237	ssb	96	48.214	ENSRROG00000040346	SSB	96	47.959	Rhinopithecus_roxellana
ENSEBUG00000001237	ssb	96	41.237	ENSRROG00000031684	-	98	41.237	Rhinopithecus_roxellana
ENSEBUG00000001237	ssb	96	40.051	ENSRROG00000007149	-	96	40.051	Rhinopithecus_roxellana
ENSEBUG00000001237	ssb	87	46.218	ENSRROG00000034102	-	87	45.938	Rhinopithecus_roxellana
ENSEBUG00000001237	ssb	96	48.469	ENSSBOG00000027204	SSB	96	48.214	Saimiri_boliviensis_boliviensis
ENSEBUG00000001237	ssb	92	48.747	ENSSHAG00000018062	SSB	96	46.547	Sarcophilus_harrisii
ENSEBUG00000001237	ssb	94	47.297	ENSSFOG00015000550	ssb	91	48.378	Scleropages_formosus
ENSEBUG00000001237	ssb	97	44.588	ENSSMAG00000013885	ssb	99	46.392	Scophthalmus_maximus
ENSEBUG00000001237	ssb	96	44.246	ENSSDUG00000020117	ssb	99	44.750	Seriola_dumerili
ENSEBUG00000001237	ssb	97	44.216	ENSSLDG00000002525	ssb	99	43.622	Seriola_lalandi_dorsalis
ENSEBUG00000001237	ssb	92	43.122	ENSSARG00000007747	SSB	98	43.122	Sorex_araneus
ENSEBUG00000001237	ssb	94	47.884	ENSSPUG00000012112	SSB	92	47.884	Sphenodon_punctatus
ENSEBUG00000001237	ssb	83	47.531	ENSSPAG00000005696	ssb	95	45.777	Stegastes_partitus
ENSEBUG00000001237	ssb	91	47.740	ENSSSCG00000015938	SSB	81	50.000	Sus_scrofa
ENSEBUG00000001237	ssb	94	47.123	ENSTGUG00000007942	SSB	88	48.493	Taeniopygia_guttata
ENSEBUG00000001237	ssb	97	45.455	ENSTRUG00000017839	ssb	99	45.226	Takifugu_rubripes
ENSEBUG00000001237	ssb	93	45.730	ENSTNIG00000000915	ssb	99	45.179	Tetraodon_nigroviridis
ENSEBUG00000001237	ssb	74	52.830	ENSTBEG00000009056	SSB	70	52.830	Tupaia_belangeri
ENSEBUG00000001237	ssb	96	47.949	ENSTTRG00000002152	SSB	96	47.692	Tursiops_truncatus
ENSEBUG00000001237	ssb	92	49.721	ENSUAMG00000027833	SSB	96	48.913	Ursus_americanus
ENSEBUG00000001237	ssb	96	47.837	ENSUMAG00000013907	SSB	96	47.583	Ursus_maritimus
ENSEBUG00000001237	ssb	92	50.000	ENSVPAG00000007183	SSB	89	49.721	Vicugna_pacos
ENSEBUG00000001237	ssb	96	47.837	ENSVVUG00000016573	SSB	75	47.583	Vulpes_vulpes
ENSEBUG00000001237	ssb	91	45.892	ENSXETG00000025402	ssb	83	45.892	Xenopus_tropicalis
ENSEBUG00000001237	ssb	83	47.335	ENSXCOG00000019109	ssb	94	46.648	Xiphophorus_couchianus
ENSEBUG00000001237	ssb	96	45.088	ENSXMAG00000004888	ssb	98	45.477	Xiphophorus_maculatus