EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000001285 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 134401 bases
Position: chrFYBX02010014.1:1985625-2120025
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000001487	PRP21_like_P	PF12230.8	9.3e-49	1	1
ENSEBUP00000001487	Surp	PF01805.20	3.1e-42	1	2
ENSEBUP00000001487	Surp	PF01805.20	3.1e-42	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000001815	-	5052	-	ENSEBUP00000001487	821 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000001285's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000001285's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000001285	sf3a1	96	67.160	ENSG00000099995	SF3A1	100	64.941	Homo_sapiens
ENSEBUG00000001285	sf3a1	95	70.013	ENSAPOG00000020465	sf3a1	97	68.250	Acanthochromis_polyacanthus
ENSEBUG00000001285	sf3a1	96	67.284	ENSAMEG00000007737	SF3A1	100	65.059	Ailuropoda_melanoleuca
ENSEBUG00000001285	sf3a1	96	68.148	ENSACIG00000020672	sf3a1	98	66.626	Amphilophus_citrinellus
ENSEBUG00000001285	sf3a1	95	70.013	ENSAOCG00000003060	sf3a1	97	68.467	Amphiprion_ocellaris
ENSEBUG00000001285	sf3a1	95	70.013	ENSAPEG00000010735	sf3a1	97	67.790	Amphiprion_percula
ENSEBUG00000001285	sf3a1	96	68.025	ENSATEG00000021201	sf3a1	99	67.070	Anabas_testudineus
ENSEBUG00000001285	sf3a1	94	68.774	ENSAPLG00000009057	SF3A1	99	68.244	Anas_platyrhynchos
ENSEBUG00000001285	sf3a1	96	67.643	ENSACAG00000009415	SF3A1	97	68.344	Anolis_carolinensis
ENSEBUG00000001285	sf3a1	96	67.120	ENSANAG00000032045	SF3A1	98	65.981	Aotus_nancymaae
ENSEBUG00000001285	sf3a1	96	68.773	ENSACLG00000012622	sf3a1	98	67.034	Astatotilapia_calliptera
ENSEBUG00000001285	sf3a1	96	68.227	ENSAMXG00000005382	sf3a1	99	66.872	Astyanax_mexicanus
ENSEBUG00000001285	sf3a1	96	67.284	ENSBTAG00000003390	SF3A1	100	65.176	Bos_taurus
ENSEBUG00000001285	sf3a1	81	40.975	WBGene00004188	prp-21	95	48.288	Caenorhabditis_elegans
ENSEBUG00000001285	sf3a1	96	67.120	ENSCJAG00000010370	SF3A1	98	65.981	Callithrix_jacchus
ENSEBUG00000001285	sf3a1	96	67.284	ENSCAFG00000012559	SF3A1	100	65.176	Canis_familiaris
ENSEBUG00000001285	sf3a1	96	67.284	ENSCAFG00020000838	SF3A1	100	65.176	Canis_lupus_dingo
ENSEBUG00000001285	sf3a1	96	67.407	ENSCHIG00000018642	SF3A1	100	65.294	Capra_hircus
ENSEBUG00000001285	sf3a1	96	67.284	ENSTSYG00000004739	SF3A1	100	65.176	Carlito_syrichta
ENSEBUG00000001285	sf3a1	92	53.706	ENSCAPG00000015414	SF3A1	98	53.788	Cavia_aperea
ENSEBUG00000001285	sf3a1	96	67.450	ENSCPOG00000014589	SF3A1	100	64.824	Cavia_porcellus
ENSEBUG00000001285	sf3a1	96	67.120	ENSCCAG00000032006	SF3A1	98	65.981	Cebus_capucinus
ENSEBUG00000001285	sf3a1	96	66.914	ENSCATG00000029241	SF3A1	98	66.102	Cercocebus_atys
ENSEBUG00000001285	sf3a1	96	67.079	ENSCLAG00000006508	SF3A1	100	65.059	Chinchilla_lanigera
ENSEBUG00000001285	sf3a1	96	66.914	ENSCSAG00000009470	SF3A1	98	66.102	Chlorocebus_sabaeus
ENSEBUG00000001285	sf3a1	55	82.143	ENSCHOG00000005201	SF3A1	66	79.259	Choloepus_hoffmanni
ENSEBUG00000001285	sf3a1	100	65.670	ENSCPBG00000007595	SF3A1	100	65.755	Chrysemys_picta_bellii
ENSEBUG00000001285	sf3a1	93	49.689	ENSCING00000008526	-	98	49.328	Ciona_intestinalis
ENSEBUG00000001285	sf3a1	81	68.421	ENSCSAVG00000005608	-	93	65.455	Ciona_savignyi
ENSEBUG00000001285	sf3a1	96	66.914	ENSCANG00000033564	SF3A1	98	66.102	Colobus_angolensis_palliatus
ENSEBUG00000001285	sf3a1	76	68.196	ENSCGRG00001008933	Sf3a1	98	66.102	Cricetulus_griseus_chok1gshd
ENSEBUG00000001285	sf3a1	76	68.196	ENSCGRG00000006127	Sf3a1	98	66.102	Cricetulus_griseus_crigri
ENSEBUG00000001285	sf3a1	95	69.182	ENSCSEG00000010792	sf3a1	97	67.673	Cynoglossus_semilaevis
ENSEBUG00000001285	sf3a1	96	69.042	ENSCVAG00000004560	sf3a1	97	67.611	Cyprinodon_variegatus
ENSEBUG00000001285	sf3a1	96	68.867	ENSDARG00000041887	sf3a1	92	80.255	Danio_rerio
ENSEBUG00000001285	sf3a1	96	67.365	ENSDNOG00000010629	SF3A1	97	67.407	Dasypus_novemcinctus
ENSEBUG00000001285	sf3a1	96	67.531	ENSDORG00000005613	Sf3a1	98	66.102	Dipodomys_ordii
ENSEBUG00000001285	sf3a1	83	57.221	FBgn0266917	Sf3a1	100	49.754	Drosophila_melanogaster
ENSEBUG00000001285	sf3a1	84	65.199	ENSETEG00000017194	SF3A1	95	64.286	Echinops_telfairi
ENSEBUG00000001285	sf3a1	95	68.045	ENSEASG00005010254	SF3A1	100	65.059	Equus_asinus_asinus
ENSEBUG00000001285	sf3a1	95	68.045	ENSECAG00000023962	SF3A1	100	65.059	Equus_caballus
ENSEBUG00000001285	sf3a1	69	86.885	ENSEEUG00000003159	SF3A1	78	86.885	Erinaceus_europaeus
ENSEBUG00000001285	sf3a1	95	69.000	ENSELUG00000022578	sf3a1	97	68.045	Esox_lucius
ENSEBUG00000001285	sf3a1	96	67.284	ENSFCAG00000011932	SF3A1	100	65.059	Felis_catus
ENSEBUG00000001285	sf3a1	94	68.695	ENSFALG00000006944	SF3A1	99	66.707	Ficedula_albicollis
ENSEBUG00000001285	sf3a1	96	67.203	ENSFDAG00000009560	SF3A1	100	65.176	Fukomys_damarensis
ENSEBUG00000001285	sf3a1	95	69.511	ENSFHEG00000010866	sf3a1	98	67.946	Fundulus_heteroclitus
ENSEBUG00000001285	sf3a1	95	68.687	ENSGMOG00000016024	sf3a1	97	67.045	Gadus_morhua
ENSEBUG00000001285	sf3a1	94	68.608	ENSGALG00000007937	SF3A1	99	67.357	Gallus_gallus
ENSEBUG00000001285	sf3a1	95	68.758	ENSGAFG00000009111	sf3a1	97	67.166	Gambusia_affinis
ENSEBUG00000001285	sf3a1	95	67.915	ENSGACG00000011893	sf3a1	96	66.750	Gasterosteus_aculeatus
ENSEBUG00000001285	sf3a1	96	64.757	ENSGAGG00000000762	SF3A1	99	64.728	Gopherus_agassizii
ENSEBUG00000001285	sf3a1	96	67.160	ENSGGOG00000012631	SF3A1	100	64.941	Gorilla_gorilla
ENSEBUG00000001285	sf3a1	96	69.098	ENSHBUG00000015795	sf3a1	98	67.034	Haplochromis_burtoni
ENSEBUG00000001285	sf3a1	96	67.327	ENSHGLG00000007907	SF3A1	100	65.059	Heterocephalus_glaber_female
ENSEBUG00000001285	sf3a1	96	67.327	ENSHGLG00100013799	SF3A1	100	65.059	Heterocephalus_glaber_male
ENSEBUG00000001285	sf3a1	96	67.662	ENSHCOG00000015423	sf3a1	98	66.998	Hippocampus_comes
ENSEBUG00000001285	sf3a1	97	68.254	ENSIPUG00000002470	sf3a1	99	67.651	Ictalurus_punctatus
ENSEBUG00000001285	sf3a1	96	67.284	ENSSTOG00000013892	SF3A1	98	66.102	Ictidomys_tridecemlineatus
ENSEBUG00000001285	sf3a1	96	67.244	ENSJJAG00000022566	Sf3a1	100	64.941	Jaculus_jaculus
ENSEBUG00000001285	sf3a1	95	68.210	ENSKMAG00000002400	sf3a1	97	67.625	Kryptolebias_marmoratus
ENSEBUG00000001285	sf3a1	95	68.428	ENSLBEG00000022974	sf3a1	97	66.374	Labrus_bergylta
ENSEBUG00000001285	sf3a1	97	66.994	ENSLACG00000003565	SF3A1	99	66.708	Latimeria_chalumnae
ENSEBUG00000001285	sf3a1	96	68.927	ENSLOCG00000008251	sf3a1	98	67.568	Lepisosteus_oculatus
ENSEBUG00000001285	sf3a1	96	67.037	ENSLAFG00000000448	SF3A1	98	66.223	Loxodonta_africana
ENSEBUG00000001285	sf3a1	95	47.843	ENSLAFG00000026032	-	96	46.985	Loxodonta_africana
ENSEBUG00000001285	sf3a1	96	66.790	ENSMFAG00000031979	SF3A1	98	66.223	Macaca_fascicularis
ENSEBUG00000001285	sf3a1	96	66.790	ENSMMUG00000005547	SF3A1	98	66.223	Macaca_mulatta
ENSEBUG00000001285	sf3a1	96	66.914	ENSMNEG00000037229	SF3A1	98	66.344	Macaca_nemestrina
ENSEBUG00000001285	sf3a1	96	66.914	ENSMLEG00000041908	SF3A1	98	66.102	Mandrillus_leucophaeus
ENSEBUG00000001285	sf3a1	96	69.165	ENSMAMG00000006460	sf3a1	97	67.279	Mastacembelus_armatus
ENSEBUG00000001285	sf3a1	96	68.773	ENSMZEG00005009633	sf3a1	98	67.034	Maylandia_zebra
ENSEBUG00000001285	sf3a1	94	68.608	ENSMGAG00000001330	SF3A1	99	68.329	Meleagris_gallopavo
ENSEBUG00000001285	sf3a1	73	62.932	ENSMAUG00000020317	Sf3a1	94	64.103	Mesocricetus_auratus
ENSEBUG00000001285	sf3a1	96	66.955	ENSMICG00000010038	SF3A1	98	65.981	Microcebus_murinus
ENSEBUG00000001285	sf3a1	77	67.337	ENSMOCG00000008438	Sf3a1	98	66.102	Microtus_ochrogaster
ENSEBUG00000001285	sf3a1	95	67.300	ENSMMOG00000015588	sf3a1	96	65.952	Mola_mola
ENSEBUG00000001285	sf3a1	95	67.618	ENSMODG00000009270	SF3A1	100	66.232	Monodelphis_domestica
ENSEBUG00000001285	sf3a1	95	69.308	ENSMALG00000000148	sf3a1	99	67.226	Monopterus_albus
ENSEBUG00000001285	sf3a1	77	67.341	MGP_CAROLIEiJ_G0016029	Sf3a1	97	66.504	Mus_caroli
ENSEBUG00000001285	sf3a1	77	67.341	ENSMUSG00000002129	Sf3a1	97	66.504	Mus_musculus
ENSEBUG00000001285	sf3a1	77	67.341	MGP_PahariEiJ_G0016862	Sf3a1	97	67.237	Mus_pahari
ENSEBUG00000001285	sf3a1	77	67.341	MGP_SPRETEiJ_G0016870	Sf3a1	97	66.504	Mus_spretus
ENSEBUG00000001285	sf3a1	96	67.407	ENSMPUG00000013144	SF3A1	98	66.586	Mustela_putorius_furo
ENSEBUG00000001285	sf3a1	96	67.284	ENSMLUG00000002139	SF3A1	100	65.059	Myotis_lucifugus
ENSEBUG00000001285	sf3a1	95	68.296	ENSNGAG00000016977	Sf3a1	98	66.102	Nannospalax_galili
ENSEBUG00000001285	sf3a1	95	69.686	ENSNBRG00000016642	sf3a1	96	67.581	Neolamprologus_brichardi
ENSEBUG00000001285	sf3a1	96	66.914	ENSNLEG00000003686	SF3A1	98	66.102	Nomascus_leucogenys
ENSEBUG00000001285	sf3a1	91	62.047	ENSMEUG00000008741	SF3A1	100	60.099	Notamacropus_eugenii
ENSEBUG00000001285	sf3a1	96	67.286	ENSOPRG00000016636	SF3A1	100	64.941	Ochotona_princeps
ENSEBUG00000001285	sf3a1	95	67.537	ENSODEG00000002571	SF3A1	98	66.425	Octodon_degus
ENSEBUG00000001285	sf3a1	96	68.765	ENSONIG00000010848	sf3a1	98	67.282	Oreochromis_niloticus
ENSEBUG00000001285	sf3a1	96	67.244	ENSOCUG00000007633	SF3A1	100	65.059	Oryctolagus_cuniculus
ENSEBUG00000001285	sf3a1	91	67.102	ENSORLG00000013050	sf3a1	96	66.188	Oryzias_latipes
ENSEBUG00000001285	sf3a1	91	67.674	ENSORLG00020003236	sf3a1	92	66.360	Oryzias_latipes_hni
ENSEBUG00000001285	sf3a1	95	68.388	ENSORLG00015017411	sf3a1	97	67.170	Oryzias_latipes_hsok
ENSEBUG00000001285	sf3a1	95	69.144	ENSOMEG00000013362	sf3a1	97	67.632	Oryzias_melastigma
ENSEBUG00000001285	sf3a1	96	66.914	ENSOGAG00000012931	SF3A1	100	65.059	Otolemur_garnettii
ENSEBUG00000001285	sf3a1	96	67.162	ENSOARG00000006849	SF3A1	100	65.053	Ovis_aries
ENSEBUG00000001285	sf3a1	96	66.914	ENSPPAG00000041790	SF3A1	100	64.235	Pan_paniscus
ENSEBUG00000001285	sf3a1	96	67.284	ENSPPRG00000004391	SF3A1	100	65.059	Panthera_pardus
ENSEBUG00000001285	sf3a1	96	67.160	ENSPTIG00000000844	SF3A1	99	66.300	Panthera_tigris_altaica
ENSEBUG00000001285	sf3a1	96	67.160	ENSPTRG00000014240	SF3A1	100	64.941	Pan_troglodytes
ENSEBUG00000001285	sf3a1	96	66.914	ENSPANG00000020772	SF3A1	98	66.102	Papio_anubis
ENSEBUG00000001285	sf3a1	78	84.615	ENSPSIG00000012803	SF3A1	99	66.450	Pelodiscus_sinensis
ENSEBUG00000001285	sf3a1	95	68.234	ENSPMGG00000023096	sf3a1	99	67.344	Periophthalmus_magnuspinnatus
ENSEBUG00000001285	sf3a1	76	68.297	ENSPEMG00000009494	Sf3a1	98	66.102	Peromyscus_maniculatus_bairdii
ENSEBUG00000001285	sf3a1	64	76.128	ENSPMAG00000007139	-	93	71.306	Petromyzon_marinus
ENSEBUG00000001285	sf3a1	95	67.702	ENSPCIG00000022692	SF3A1	97	68.109	Phascolarctos_cinereus
ENSEBUG00000001285	sf3a1	92	63.377	ENSPFOG00000016768	sf3a1	93	61.757	Poecilia_formosa
ENSEBUG00000001285	sf3a1	95	69.009	ENSPLAG00000017268	sf3a1	97	67.497	Poecilia_latipinna
ENSEBUG00000001285	sf3a1	85	66.900	ENSPMEG00000019811	sf3a1	99	65.272	Poecilia_mexicana
ENSEBUG00000001285	sf3a1	95	68.883	ENSPREG00000010347	sf3a1	97	67.497	Poecilia_reticulata
ENSEBUG00000001285	sf3a1	96	66.914	ENSPPYG00000011707	SF3A1	98	66.102	Pongo_abelii
ENSEBUG00000001285	sf3a1	58	65.056	ENSPCAG00000003266	SF3A1	57	63.063	Procavia_capensis
ENSEBUG00000001285	sf3a1	96	67.079	ENSPCOG00000026630	SF3A1	98	65.981	Propithecus_coquereli
ENSEBUG00000001285	sf3a1	93	66.582	ENSPVAG00000017719	SF3A1	94	66.961	Pteropus_vampyrus
ENSEBUG00000001285	sf3a1	96	69.098	ENSPNYG00000018706	sf3a1	98	67.034	Pundamilia_nyererei
ENSEBUG00000001285	sf3a1	96	68.434	ENSPNAG00000003721	sf3a1	99	66.220	Pygocentrus_nattereri
ENSEBUG00000001285	sf3a1	77	67.341	ENSRNOG00000005218	Sf3a1	97	66.504	Rattus_norvegicus
ENSEBUG00000001285	sf3a1	96	66.914	ENSRBIG00000032167	SF3A1	98	65.981	Rhinopithecus_bieti
ENSEBUG00000001285	sf3a1	96	66.914	ENSRROG00000044908	SF3A1	98	65.981	Rhinopithecus_roxellana
ENSEBUG00000001285	sf3a1	92	66.580	ENSSBOG00000021960	SF3A1	99	64.583	Saimiri_boliviensis_boliviensis
ENSEBUG00000001285	sf3a1	98	64.286	ENSSHAG00000003666	SF3A1	99	64.294	Sarcophilus_harrisii
ENSEBUG00000001285	sf3a1	96	68.550	ENSSFOG00015004579	sf3a1	98	67.319	Scleropages_formosus
ENSEBUG00000001285	sf3a1	96	66.504	ENSSMAG00000004275	sf3a1	98	66.295	Scophthalmus_maximus
ENSEBUG00000001285	sf3a1	96	68.974	ENSSDUG00000022219	sf3a1	98	67.244	Seriola_dumerili
ENSEBUG00000001285	sf3a1	96	68.974	ENSSLDG00000012642	sf3a1	98	67.244	Seriola_lalandi_dorsalis
ENSEBUG00000001285	sf3a1	96	64.321	ENSSARG00000005960	SF3A1	99	64.347	Sorex_araneus
ENSEBUG00000001285	sf3a1	95	66.791	ENSSPUG00000018863	SF3A1	100	64.947	Sphenodon_punctatus
ENSEBUG00000001285	sf3a1	95	69.560	ENSSPAG00000011856	sf3a1	97	67.500	Stegastes_partitus
ENSEBUG00000001285	sf3a1	96	67.654	ENSSSCG00000010002	SF3A1	100	65.176	Sus_scrofa
ENSEBUG00000001285	sf3a1	94	68.813	ENSTGUG00000010547	SF3A1	99	68.035	Taeniopygia_guttata
ENSEBUG00000001285	sf3a1	76	68.621	ENSTRUG00000006118	sf3a1	97	66.248	Takifugu_rubripes
ENSEBUG00000001285	sf3a1	51	75.410	ENSTNIG00000005713	sf3a1	92	71.223	Tetraodon_nigroviridis
ENSEBUG00000001285	sf3a1	96	61.852	ENSTBEG00000012771	SF3A1	100	60.941	Tupaia_belangeri
ENSEBUG00000001285	sf3a1	96	67.324	ENSTTRG00000001535	SF3A1	100	65.100	Tursiops_truncatus
ENSEBUG00000001285	sf3a1	99	64.910	ENSUAMG00000006750	SF3A1	99	64.218	Ursus_americanus
ENSEBUG00000001285	sf3a1	97	66.871	ENSUMAG00000016665	SF3A1	99	67.625	Ursus_maritimus
ENSEBUG00000001285	sf3a1	96	67.284	ENSVVUG00000003075	SF3A1	100	65.176	Vulpes_vulpes
ENSEBUG00000001285	sf3a1	95	66.961	ENSXETG00000016144	sf3a1	88	81.333	Xenopus_tropicalis
ENSEBUG00000001285	sf3a1	95	69.134	ENSXCOG00000015653	sf3a1	97	67.629	Xiphophorus_couchianus
ENSEBUG00000001285	sf3a1	95	68.679	ENSXMAG00000002753	sf3a1	97	67.754	Xiphophorus_maculatus