EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000001793 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: snrpfl
Full Name: -
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 5451 bases
Position: chrFYBX02010683.1:9843762-9849212
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000002307	LSM	PF01423.22	1.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000002658	-	282	-	ENSEBUP00000002307	93 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000001793's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000001793's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000001793	-	78	38.356	ENSEBUG00000017073	lsm6	90	38.356

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000001793	-	72	86.567	ENSG00000139343	SNRPF	95	75.610	Homo_sapiens
ENSEBUG00000001793	-	72	86.567	ENSAPOG00000003377	snrpf	63	76.543	Acanthochromis_polyacanthus
ENSEBUG00000001793	-	72	77.612	ENSAMEG00000018718	-	94	67.901	Ailuropoda_melanoleuca
ENSEBUG00000001793	-	72	86.567	ENSAMEG00000002166	-	96	75.610	Ailuropoda_melanoleuca
ENSEBUG00000001793	-	72	86.567	ENSACIG00000013216	snrpf	96	75.610	Amphilophus_citrinellus
ENSEBUG00000001793	-	72	86.567	ENSAOCG00000015108	snrpf	96	75.610	Amphiprion_ocellaris
ENSEBUG00000001793	-	72	86.567	ENSAPEG00000022022	snrpf	96	75.610	Amphiprion_percula
ENSEBUG00000001793	-	72	86.567	ENSATEG00000022625	snrpf	87	76.543	Anabas_testudineus
ENSEBUG00000001793	-	72	85.075	ENSACAG00000014073	SNRPF	94	74.390	Anolis_carolinensis
ENSEBUG00000001793	-	66	65.574	ENSANAG00000025860	-	93	55.556	Aotus_nancymaae
ENSEBUG00000001793	-	72	86.567	ENSANAG00000032845	SNRPF	95	75.610	Aotus_nancymaae
ENSEBUG00000001793	-	72	77.612	ENSANAG00000020297	-	74	69.136	Aotus_nancymaae
ENSEBUG00000001793	-	72	86.567	ENSACLG00000016066	snrpf	96	75.610	Astatotilapia_calliptera
ENSEBUG00000001793	-	76	81.690	ENSAMXG00000007421	snrpf	88	76.623	Astyanax_mexicanus
ENSEBUG00000001793	-	72	86.567	ENSBTAG00000016271	SNRPF	95	75.610	Bos_taurus
ENSEBUG00000001793	-	80	74.324	ENSBTAG00000050012	-	90	74.324	Bos_taurus
ENSEBUG00000001793	-	83	64.935	WBGene00004918	snr-5	89	64.935	Caenorhabditis_elegans
ENSEBUG00000001793	-	72	86.567	ENSCJAG00000002705	-	95	75.610	Callithrix_jacchus
ENSEBUG00000001793	-	72	86.567	ENSCAFG00000006395	-	73	76.543	Canis_familiaris
ENSEBUG00000001793	-	72	80.597	ENSCAFG00000031151	-	93	72.500	Canis_familiaris
ENSEBUG00000001793	-	72	80.597	ENSCAFG00020010823	-	93	72.500	Canis_lupus_dingo
ENSEBUG00000001793	-	71	86.364	ENSCAFG00020013161	-	70	86.364	Canis_lupus_dingo
ENSEBUG00000001793	-	76	80.556	ENSTSYG00000036502	-	95	73.494	Carlito_syrichta
ENSEBUG00000001793	-	72	71.642	ENSTSYG00000030635	-	95	63.415	Carlito_syrichta
ENSEBUG00000001793	-	88	71.951	ENSTSYG00000031636	-	68	71.951	Carlito_syrichta
ENSEBUG00000001793	-	72	86.567	ENSCAPG00000007242	SNRPF	96	75.610	Cavia_aperea
ENSEBUG00000001793	-	72	86.567	ENSCPOG00000013898	SNRPF	95	75.610	Cavia_porcellus
ENSEBUG00000001793	-	72	86.567	ENSCCAG00000037378	-	95	75.610	Cebus_capucinus
ENSEBUG00000001793	-	89	67.470	ENSCCAG00000033627	-	65	67.470	Cebus_capucinus
ENSEBUG00000001793	-	72	86.567	ENSCCAG00000017356	-	95	75.610	Cebus_capucinus
ENSEBUG00000001793	-	72	86.567	ENSCLAG00000007200	SNRPF	95	75.610	Chinchilla_lanigera
ENSEBUG00000001793	-	72	86.567	ENSCSAG00000003602	-	67	75.610	Chlorocebus_sabaeus
ENSEBUG00000001793	-	65	93.333	ENSCHOG00000009392	SNRPF	94	93.333	Choloepus_hoffmanni
ENSEBUG00000001793	-	72	79.104	ENSCPBG00000006227	-	95	69.512	Chrysemys_picta_bellii
ENSEBUG00000001793	-	85	74.684	ENSCPBG00000024287	-	64	74.684	Chrysemys_picta_bellii
ENSEBUG00000001793	-	85	69.136	ENSCPBG00000026463	-	94	69.136	Chrysemys_picta_bellii
ENSEBUG00000001793	-	82	71.053	ENSCPBG00000001985	-	89	71.053	Chrysemys_picta_bellii
ENSEBUG00000001793	-	83	79.221	ENSCSAVG00000007498	-	86	79.221	Ciona_savignyi
ENSEBUG00000001793	-	72	82.090	ENSCGRG00001008965	-	72	64.516	Cricetulus_griseus_chok1gshd
ENSEBUG00000001793	-	72	86.567	ENSCGRG00001017100	-	95	75.610	Cricetulus_griseus_chok1gshd
ENSEBUG00000001793	-	83	75.325	ENSCGRG00000018878	-	95	75.325	Cricetulus_griseus_crigri
ENSEBUG00000001793	-	72	86.567	ENSCGRG00000000336	-	95	75.610	Cricetulus_griseus_crigri
ENSEBUG00000001793	-	72	85.075	ENSCSEG00000004748	snrpf	95	74.390	Cynoglossus_semilaevis
ENSEBUG00000001793	-	72	86.567	ENSCVAG00000000397	snrpf	65	75.610	Cyprinodon_variegatus
ENSEBUG00000001793	-	72	84.058	ENSDARG00000105037	snrpf	95	73.810	Danio_rerio
ENSEBUG00000001793	-	72	85.075	ENSDNOG00000048989	-	72	75.309	Dasypus_novemcinctus
ENSEBUG00000001793	-	72	86.567	ENSDNOG00000043775	-	52	76.543	Dasypus_novemcinctus
ENSEBUG00000001793	-	72	77.612	ENSDNOG00000049373	-	66	72.368	Dasypus_novemcinctus
ENSEBUG00000001793	-	59	83.636	ENSDORG00000029740	-	84	72.464	Dipodomys_ordii
ENSEBUG00000001793	-	72	74.627	ENSDORG00000025351	-	93	74.627	Dipodomys_ordii
ENSEBUG00000001793	-	86	65.854	FBgn0000426	SmF	93	65.854	Drosophila_melanogaster
ENSEBUG00000001793	-	72	86.567	ENSETEG00000001558	-	95	75.610	Echinops_telfairi
ENSEBUG00000001793	-	72	86.567	ENSECAG00000019817	SNRPF	67	75.610	Equus_caballus
ENSEBUG00000001793	-	72	86.567	ENSEEUG00000013509	SNRPF	96	75.610	Erinaceus_europaeus
ENSEBUG00000001793	-	72	86.567	ENSELUG00000007737	RUXF	95	74.699	Esox_lucius
ENSEBUG00000001793	-	72	86.567	ENSELUG00000003121	RUXF	95	75.610	Esox_lucius
ENSEBUG00000001793	-	72	86.567	ENSFCAG00000029966	-	95	75.610	Felis_catus
ENSEBUG00000001793	-	63	72.881	ENSFCAG00000021942	-	94	60.759	Felis_catus
ENSEBUG00000001793	-	72	61.194	ENSFCAG00000031148	-	73	56.250	Felis_catus
ENSEBUG00000001793	-	72	86.567	ENSFALG00000010799	SNRPF	95	75.610	Ficedula_albicollis
ENSEBUG00000001793	-	72	86.567	ENSFDAG00000002831	-	95	75.610	Fukomys_damarensis
ENSEBUG00000001793	-	72	86.567	ENSFHEG00000003240	snrpf	71	76.543	Fundulus_heteroclitus
ENSEBUG00000001793	-	72	86.567	ENSGMOG00000007741	snrpf	96	75.610	Gadus_morhua
ENSEBUG00000001793	-	72	86.567	ENSGALG00000011409	SNRPF	95	75.610	Gallus_gallus
ENSEBUG00000001793	-	72	86.567	ENSGAFG00000016187	snrpf	94	75.610	Gambusia_affinis
ENSEBUG00000001793	-	72	85.075	ENSGACG00000020055	snrpf	96	74.390	Gasterosteus_aculeatus
ENSEBUG00000001793	-	61	68.421	ENSGAGG00000011163	-	98	68.421	Gopherus_agassizii
ENSEBUG00000001793	-	73	77.941	ENSGAGG00000012945	-	69	77.632	Gopherus_agassizii
ENSEBUG00000001793	-	82	72.368	ENSGAGG00000022991	-	88	72.368	Gopherus_agassizii
ENSEBUG00000001793	-	69	79.688	ENSGAGG00000014132	-	90	72.727	Gopherus_agassizii
ENSEBUG00000001793	-	91	65.517	ENSGAGG00000020974	-	73	65.517	Gopherus_agassizii
ENSEBUG00000001793	-	72	86.567	ENSGGOG00000001127	-	96	75.610	Gorilla_gorilla
ENSEBUG00000001793	-	72	64.179	ENSGGOG00000039936	-	95	57.143	Gorilla_gorilla
ENSEBUG00000001793	-	80	59.459	ENSGGOG00000039564	-	88	59.459	Gorilla_gorilla
ENSEBUG00000001793	-	72	85.075	ENSHGLG00000021172	-	95	74.390	Heterocephalus_glaber_female
ENSEBUG00000001793	-	72	86.567	ENSHGLG00000009108	SNRPF	95	75.610	Heterocephalus_glaber_female
ENSEBUG00000001793	-	72	86.567	ENSHGLG00100008103	-	96	75.610	Heterocephalus_glaber_male
ENSEBUG00000001793	-	72	85.075	ENSHGLG00100019596	-	95	74.390	Heterocephalus_glaber_male
ENSEBUG00000001793	-	97	64.286	ENSHCOG00000018663	snrpf	75	64.286	Hippocampus_comes
ENSEBUG00000001793	-	72	86.567	ENSIPUG00000018994	snrpf	96	75.610	Ictalurus_punctatus
ENSEBUG00000001793	-	72	86.567	ENSSTOG00000010434	-	95	75.610	Ictidomys_tridecemlineatus
ENSEBUG00000001793	-	86	60.000	ENSJJAG00000004558	-	95	60.000	Jaculus_jaculus
ENSEBUG00000001793	-	72	86.567	ENSJJAG00000011272	-	95	75.610	Jaculus_jaculus
ENSEBUG00000001793	-	85	65.823	ENSJJAG00000010502	-	94	65.823	Jaculus_jaculus
ENSEBUG00000001793	-	69	70.312	ENSJJAG00000004828	-	98	70.312	Jaculus_jaculus
ENSEBUG00000001793	-	72	86.567	ENSKMAG00000013566	snrpf	95	75.610	Kryptolebias_marmoratus
ENSEBUG00000001793	-	72	88.060	ENSLBEG00000008800	snrpf	95	76.829	Labrus_bergylta
ENSEBUG00000001793	-	72	86.567	ENSLACG00000002456	-	70	75.610	Latimeria_chalumnae
ENSEBUG00000001793	-	72	83.582	ENSLOCG00000015744	snrpf	95	73.171	Lepisosteus_oculatus
ENSEBUG00000001793	-	72	86.567	ENSLAFG00000017426	SNRPF	95	75.610	Loxodonta_africana
ENSEBUG00000001793	-	72	88.060	ENSMAMG00000016593	snrpf	96	76.829	Mastacembelus_armatus
ENSEBUG00000001793	-	72	86.567	ENSMZEG00005014701	snrpf	96	75.610	Maylandia_zebra
ENSEBUG00000001793	-	72	86.567	ENSMGAG00000011453	-	74	75.610	Meleagris_gallopavo
ENSEBUG00000001793	-	63	86.441	ENSMAUG00000016909	-	100	74.324	Mesocricetus_auratus
ENSEBUG00000001793	-	72	80.597	ENSMAUG00000008799	-	94	71.605	Mesocricetus_auratus
ENSEBUG00000001793	-	63	86.441	ENSMAUG00000019737	-	100	74.324	Mesocricetus_auratus
ENSEBUG00000001793	-	62	72.414	ENSMAUG00000010289	-	75	72.414	Mesocricetus_auratus
ENSEBUG00000001793	-	72	80.597	ENSMICG00000030494	-	65	71.605	Microcebus_murinus
ENSEBUG00000001793	-	72	86.567	ENSMICG00000012153	-	95	75.610	Microcebus_murinus
ENSEBUG00000001793	-	69	73.438	ENSMOCG00000020220	-	94	66.216	Microtus_ochrogaster
ENSEBUG00000001793	-	72	74.627	ENSMOCG00000022166	-	73	74.627	Microtus_ochrogaster
ENSEBUG00000001793	-	72	86.567	ENSMOCG00000020437	Snrpf	95	75.610	Microtus_ochrogaster
ENSEBUG00000001793	-	76	81.690	ENSMMOG00000007127	snrpf	89	77.922	Mola_mola
ENSEBUG00000001793	-	72	86.567	ENSMODG00000008091	SNRPF	72	75.610	Monodelphis_domestica
ENSEBUG00000001793	-	72	86.567	ENSMALG00000012328	snrpf	96	75.610	Monopterus_albus
ENSEBUG00000001793	-	72	86.567	MGP_CAROLIEiJ_G0015735	-	95	75.610	Mus_caroli
ENSEBUG00000001793	-	72	86.567	ENSMUSG00000020018	Snrpf	95	75.610	Mus_musculus
ENSEBUG00000001793	-	72	86.567	MGP_PahariEiJ_G0031350	Snrpf	95	75.610	Mus_pahari
ENSEBUG00000001793	-	72	86.567	MGP_SPRETEiJ_G0016553	Snrpf	95	75.610	Mus_spretus
ENSEBUG00000001793	-	72	86.567	ENSMPUG00000007176	-	72	76.543	Mustela_putorius_furo
ENSEBUG00000001793	-	72	86.567	ENSMLUG00000026149	-	76	76.543	Myotis_lucifugus
ENSEBUG00000001793	-	72	68.657	ENSMLUG00000026269	-	72	64.935	Myotis_lucifugus
ENSEBUG00000001793	-	72	86.567	ENSMLUG00000029201	-	76	76.543	Myotis_lucifugus
ENSEBUG00000001793	-	72	86.567	ENSMLUG00000027932	-	76	76.543	Myotis_lucifugus
ENSEBUG00000001793	-	72	86.567	ENSMLUG00000013577	-	96	75.610	Myotis_lucifugus
ENSEBUG00000001793	-	72	86.567	ENSNGAG00000024292	-	95	75.610	Nannospalax_galili
ENSEBUG00000001793	-	71	70.588	ENSNGAG00000005851	-	80	70.588	Nannospalax_galili
ENSEBUG00000001793	-	72	86.567	ENSNBRG00000011682	snrpf	84	75.610	Neolamprologus_brichardi
ENSEBUG00000001793	-	72	86.567	ENSODEG00000010328	-	96	75.610	Octodon_degus
ENSEBUG00000001793	-	72	86.567	ENSOCUG00000010925	SNRPF	72	76.543	Oryctolagus_cuniculus
ENSEBUG00000001793	-	76	81.690	ENSORLG00020008216	snrpf	89	76.623	Oryzias_latipes_hni
ENSEBUG00000001793	-	76	81.690	ENSORLG00015007418	snrpf	89	76.623	Oryzias_latipes_hsok
ENSEBUG00000001793	-	72	85.075	ENSOMEG00000003018	snrpf	96	74.390	Oryzias_melastigma
ENSEBUG00000001793	-	72	85.075	ENSOGAG00000030323	-	95	74.390	Otolemur_garnettii
ENSEBUG00000001793	-	72	86.567	ENSOARG00000011853	-	70	76.543	Ovis_aries
ENSEBUG00000001793	-	80	60.811	ENSPPAG00000037479	-	88	60.811	Pan_paniscus
ENSEBUG00000001793	-	72	64.179	ENSPPAG00000037544	-	95	57.143	Pan_paniscus
ENSEBUG00000001793	-	86	53.659	ENSPPRG00000007449	-	84	53.659	Panthera_pardus
ENSEBUG00000001793	-	72	86.567	ENSPPRG00000005875	-	95	75.610	Panthera_pardus
ENSEBUG00000001793	-	72	86.567	ENSPTIG00000007520	SNRPF	95	75.610	Panthera_tigris_altaica
ENSEBUG00000001793	-	72	61.194	ENSPTIG00000005117	-	95	56.250	Panthera_tigris_altaica
ENSEBUG00000001793	-	72	64.179	ENSPTRG00000043814	-	95	57.143	Pan_troglodytes
ENSEBUG00000001793	-	80	59.459	ENSPTRG00000047717	-	88	59.459	Pan_troglodytes
ENSEBUG00000001793	-	72	86.567	ENSPKIG00000014784	snrpf	90	75.610	Paramormyrops_kingsleyae
ENSEBUG00000001793	-	72	86.567	ENSPSIG00000016462	SNRPF	95	75.610	Pelodiscus_sinensis
ENSEBUG00000001793	-	76	81.690	ENSPMGG00000023548	snrpf	89	77.922	Periophthalmus_magnuspinnatus
ENSEBUG00000001793	-	72	86.567	ENSPEMG00000023326	Snrpf	95	75.610	Peromyscus_maniculatus_bairdii
ENSEBUG00000001793	-	72	86.567	ENSPLAG00000023932	snrpf	96	75.610	Poecilia_latipinna
ENSEBUG00000001793	-	72	86.567	ENSPMEG00000003377	snrpf	96	75.610	Poecilia_mexicana
ENSEBUG00000001793	-	72	86.567	ENSPREG00000022635	snrpf	94	75.610	Poecilia_reticulata
ENSEBUG00000001793	-	72	86.567	ENSPPYG00000004847	-	95	75.610	Pongo_abelii
ENSEBUG00000001793	-	72	86.567	ENSPCOG00000023833	-	95	75.610	Propithecus_coquereli
ENSEBUG00000001793	-	72	86.567	ENSPVAG00000009036	SNRPF	95	75.610	Pteropus_vampyrus
ENSEBUG00000001793	-	72	86.567	ENSPNYG00000021712	snrpf	96	75.610	Pundamilia_nyererei
ENSEBUG00000001793	-	72	85.075	ENSPNAG00000019117	snrpf	96	74.390	Pygocentrus_nattereri
ENSEBUG00000001793	-	72	86.567	ENSRNOG00000005556	Snrpf	95	75.610	Rattus_norvegicus
ENSEBUG00000001793	-	72	83.582	ENSRBIG00000030414	-	95	73.171	Rhinopithecus_bieti
ENSEBUG00000001793	-	72	83.582	ENSRROG00000021975	-	95	73.171	Rhinopithecus_roxellana
ENSEBUG00000001793	-	72	51.471	YPR182W	SMX3	79	51.471	Saccharomyces_cerevisiae
ENSEBUG00000001793	-	69	73.438	ENSSBOG00000027638	-	93	64.198	Saimiri_boliviensis_boliviensis
ENSEBUG00000001793	-	72	86.567	ENSSBOG00000012868	-	95	75.610	Saimiri_boliviensis_boliviensis
ENSEBUG00000001793	-	72	86.567	ENSSBOG00000036179	-	95	75.610	Saimiri_boliviensis_boliviensis
ENSEBUG00000001793	-	72	73.134	ENSSBOG00000032297	-	95	64.634	Saimiri_boliviensis_boliviensis
ENSEBUG00000001793	-	72	86.567	ENSSHAG00000012294	SNRPF	74	75.610	Sarcophilus_harrisii
ENSEBUG00000001793	-	66	93.443	ENSSFOG00015021523	snrpf	91	93.443	Scleropages_formosus
ENSEBUG00000001793	-	72	85.075	ENSSMAG00000005533	snrpf	94	74.390	Scophthalmus_maximus
ENSEBUG00000001793	-	66	93.443	ENSSDUG00000016283	snrpf	73	93.443	Seriola_dumerili
ENSEBUG00000001793	-	83	66.234	ENSSLDG00000003885	-	94	66.234	Seriola_lalandi_dorsalis
ENSEBUG00000001793	-	72	86.567	ENSSLDG00000005119	snrpf	94	76.543	Seriola_lalandi_dorsalis
ENSEBUG00000001793	-	72	86.567	ENSSPUG00000014590	-	96	75.610	Sphenodon_punctatus
ENSEBUG00000001793	-	72	86.567	ENSSPAG00000003283	snrpf	93	75.610	Stegastes_partitus
ENSEBUG00000001793	-	72	86.567	ENSSSCG00000000895	SNRPF	95	75.610	Sus_scrofa
ENSEBUG00000001793	-	58	87.037	ENSTRUG00000014956	snrpf	100	73.913	Takifugu_rubripes
ENSEBUG00000001793	-	72	88.060	ENSTNIG00000012672	snrpf	95	76.829	Tetraodon_nigroviridis
ENSEBUG00000001793	-	83	72.727	ENSUAMG00000001101	-	89	72.727	Ursus_americanus
ENSEBUG00000001793	-	81	80.000	ENSUAMG00000008176	-	94	80.000	Ursus_americanus
ENSEBUG00000001793	-	72	79.104	ENSUMAG00000006177	-	89	72.727	Ursus_maritimus
ENSEBUG00000001793	-	66	93.443	ENSUMAG00000003528	-	95	75.610	Ursus_maritimus
ENSEBUG00000001793	-	72	86.567	ENSVPAG00000008712	-	95	75.610	Vicugna_pacos
ENSEBUG00000001793	-	72	79.104	ENSVVUG00000023821	-	86	79.104	Vulpes_vulpes
ENSEBUG00000001793	-	72	59.420	ENSXETG00000021630	snrpf	97	53.571	Xenopus_tropicalis
ENSEBUG00000001793	-	72	86.567	ENSXCOG00000013860	snrpf	94	75.610	Xiphophorus_couchianus
ENSEBUG00000001793	-	72	86.567	ENSXMAG00000015448	snrpf	96	75.610	Xiphophorus_maculatus