EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000002068 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 48459 bases
Position: chrFYBX02010140.1:5575090-5623548
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000002707	RRM_1	PF00076.22	1.1e-12	1	1
ENSEBUP00000002716	RRM_1	PF00076.22	1.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000003065	-	1897	-	ENSEBUP00000002707	519 (aa)	-	-
ENSEBUT00000003074	-	1896	-	ENSEBUP00000002716	519 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000002068's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000002068's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000002068	rnpc3	97	48.728	ENSG00000185946	RNPC3	95	48.733	Homo_sapiens
ENSEBUG00000002068	rnpc3	99	50.194	ENSAPOG00000017371	rnpc3	100	50.383	Acanthochromis_polyacanthus
ENSEBUG00000002068	rnpc3	97	48.828	ENSAMEG00000001694	RNPC3	94	47.860	Ailuropoda_melanoleuca
ENSEBUG00000002068	rnpc3	96	48.527	ENSACIG00000021043	rnpc3	97	48.627	Amphilophus_citrinellus
ENSEBUG00000002068	rnpc3	99	48.872	ENSAOCG00000014052	rnpc3	98	49.071	Amphiprion_ocellaris
ENSEBUG00000002068	rnpc3	99	49.060	ENSAPEG00000008739	rnpc3	98	49.257	Amphiprion_percula
ENSEBUG00000002068	rnpc3	96	50.000	ENSATEG00000021263	rnpc3	96	50.195	Anabas_testudineus
ENSEBUG00000002068	rnpc3	90	46.482	ENSAPLG00000015605	RNPC3	100	47.966	Anas_platyrhynchos
ENSEBUG00000002068	rnpc3	98	47.461	ENSACAG00000002029	RNPC3	97	48.356	Anolis_carolinensis
ENSEBUG00000002068	rnpc3	97	48.337	ENSANAG00000019950	RNPC3	95	48.538	Aotus_nancymaae
ENSEBUG00000002068	rnpc3	98	50.195	ENSACLG00000014702	rnpc3	97	50.097	Astatotilapia_calliptera
ENSEBUG00000002068	rnpc3	97	49.902	ENSAMXG00000033372	rnpc3	97	50.688	Astyanax_mexicanus
ENSEBUG00000002068	rnpc3	97	48.915	ENSBTAG00000019091	RNPC3	95	49.116	Bos_taurus
ENSEBUG00000002068	rnpc3	97	47.554	ENSCJAG00000035686	RNPC3	94	47.758	Callithrix_jacchus
ENSEBUG00000002068	rnpc3	97	48.718	ENSCAFG00000019972	RNPC3	94	48.919	Canis_familiaris
ENSEBUG00000002068	rnpc3	97	48.718	ENSCAFG00020011300	RNPC3	94	48.919	Canis_lupus_dingo
ENSEBUG00000002068	rnpc3	97	48.915	ENSCHIG00000020361	RNPC3	95	48.431	Capra_hircus
ENSEBUG00000002068	rnpc3	97	48.221	ENSTSYG00000030256	RNPC3	95	47.937	Carlito_syrichta
ENSEBUG00000002068	rnpc3	86	42.888	ENSCAPG00000013600	RNPC3	99	42.174	Cavia_aperea
ENSEBUG00000002068	rnpc3	97	48.141	ENSCPOG00000031638	RNPC3	95	47.665	Cavia_porcellus
ENSEBUG00000002068	rnpc3	97	48.532	ENSCCAG00000024301	RNPC3	95	48.733	Cebus_capucinus
ENSEBUG00000002068	rnpc3	75	42.894	ENSCATG00000035930	-	88	40.460	Cercocebus_atys
ENSEBUG00000002068	rnpc3	97	48.242	ENSCATG00000002086	RNPC3	95	48.249	Cercocebus_atys
ENSEBUG00000002068	rnpc3	97	47.162	ENSCLAG00000005169	RNPC3	95	48.047	Chinchilla_lanigera
ENSEBUG00000002068	rnpc3	97	48.242	ENSCSAG00000001519	RNPC3	95	48.249	Chlorocebus_sabaeus
ENSEBUG00000002068	rnpc3	97	47.255	ENSCPBG00000028311	RNPC3	95	48.915	Chrysemys_picta_bellii
ENSEBUG00000002068	rnpc3	95	35.306	ENSCING00000021276	-	98	35.050	Ciona_intestinalis
ENSEBUG00000002068	rnpc3	95	35.614	ENSCSAVG00000002800	-	73	55.738	Ciona_savignyi
ENSEBUG00000002068	rnpc3	97	48.343	ENSCANG00000031444	RNPC3	95	48.350	Colobus_angolensis_palliatus
ENSEBUG00000002068	rnpc3	97	47.647	ENSCGRG00001019276	Rnpc3	95	47.656	Cricetulus_griseus_chok1gshd
ENSEBUG00000002068	rnpc3	89	46.934	ENSCGRG00000000053	Rnpc3	100	46.947	Cricetulus_griseus_crigri
ENSEBUG00000002068	rnpc3	97	49.903	ENSCSEG00000013475	rnpc3	98	50.389	Cynoglossus_semilaevis
ENSEBUG00000002068	rnpc3	99	47.753	ENSCVAG00000002645	rnpc3	99	47.850	Cyprinodon_variegatus
ENSEBUG00000002068	rnpc3	99	47.368	ENSDARG00000011247	rnpc3	96	59.218	Danio_rerio
ENSEBUG00000002068	rnpc3	97	47.129	ENSDNOG00000047498	-	95	47.047	Dasypus_novemcinctus
ENSEBUG00000002068	rnpc3	97	46.931	ENSDNOG00000044555	-	95	46.850	Dasypus_novemcinctus
ENSEBUG00000002068	rnpc3	98	47.656	ENSDORG00000027343	Rnpc3	96	46.887	Dipodomys_ordii
ENSEBUG00000002068	rnpc3	97	48.509	ENSEASG00005015957	RNPC3	94	48.024	Equus_asinus_asinus
ENSEBUG00000002068	rnpc3	97	48.310	ENSECAG00000021148	RNPC3	94	47.826	Equus_caballus
ENSEBUG00000002068	rnpc3	96	48.752	ENSELUG00000002264	rnpc3	96	48.190	Esox_lucius
ENSEBUG00000002068	rnpc3	97	49.407	ENSFCAG00000024312	RNPC3	94	48.919	Felis_catus
ENSEBUG00000002068	rnpc3	90	47.146	ENSFALG00000002580	RNPC3	100	52.857	Ficedula_albicollis
ENSEBUG00000002068	rnpc3	97	48.532	ENSFDAG00000019948	RNPC3	95	47.860	Fukomys_damarensis
ENSEBUG00000002068	rnpc3	99	47.592	ENSFHEG00000020647	rnpc3	100	47.308	Fundulus_heteroclitus
ENSEBUG00000002068	rnpc3	99	45.951	ENSGMOG00000019213	rnpc3	99	47.358	Gadus_morhua
ENSEBUG00000002068	rnpc3	99	47.510	ENSGALG00000005162	RNPC3	91	47.885	Gallus_gallus
ENSEBUG00000002068	rnpc3	96	48.627	ENSGAFG00000017236	rnpc3	97	49.126	Gambusia_affinis
ENSEBUG00000002068	rnpc3	99	48.752	ENSGACG00000002048	rnpc3	99	48.399	Gasterosteus_aculeatus
ENSEBUG00000002068	rnpc3	98	47.287	ENSGAGG00000008438	RNPC3	97	48.748	Gopherus_agassizii
ENSEBUG00000002068	rnpc3	97	40.873	ENSGGOG00000026201	-	94	40.588	Gorilla_gorilla
ENSEBUG00000002068	rnpc3	81	54.545	ENSHBUG00000015966	rnpc3	83	54.545	Haplochromis_burtoni
ENSEBUG00000002068	rnpc3	97	48.039	ENSHGLG00000001708	RNPC3	95	47.368	Heterocephalus_glaber_female
ENSEBUG00000002068	rnpc3	97	48.039	ENSHGLG00100003005	RNPC3	95	47.368	Heterocephalus_glaber_male
ENSEBUG00000002068	rnpc3	97	50.397	ENSHCOG00000017135	rnpc3	97	50.891	Hippocampus_comes
ENSEBUG00000002068	rnpc3	96	50.299	ENSIPUG00000002916	rnpc3	96	49.804	Ictalurus_punctatus
ENSEBUG00000002068	rnpc3	97	48.221	ENSSTOG00000025020	RNPC3	95	47.741	Ictidomys_tridecemlineatus
ENSEBUG00000002068	rnpc3	97	48.221	ENSJJAG00000010203	Rnpc3	95	47.741	Jaculus_jaculus
ENSEBUG00000002068	rnpc3	97	48.356	ENSKMAG00000017358	rnpc3	98	49.225	Kryptolebias_marmoratus
ENSEBUG00000002068	rnpc3	96	51.683	ENSLBEG00000024901	rnpc3	94	51.976	Labrus_bergylta
ENSEBUG00000002068	rnpc3	98	48.276	ENSLACG00000005720	RNPC3	92	48.851	Latimeria_chalumnae
ENSEBUG00000002068	rnpc3	96	50.099	ENSLOCG00000007986	rnpc3	96	50.198	Lepisosteus_oculatus
ENSEBUG00000002068	rnpc3	97	47.059	ENSLAFG00000032342	RNPC3	95	47.758	Loxodonta_africana
ENSEBUG00000002068	rnpc3	97	48.242	ENSMFAG00000002004	RNPC3	95	48.249	Macaca_fascicularis
ENSEBUG00000002068	rnpc3	97	37.972	ENSMFAG00000002917	-	94	37.177	Macaca_fascicularis
ENSEBUG00000002068	rnpc3	97	48.047	ENSMMUG00000018039	RNPC3	95	48.054	Macaca_mulatta
ENSEBUG00000002068	rnpc3	76	49.767	ENSMMUG00000002098	-	84	49.302	Macaca_mulatta
ENSEBUG00000002068	rnpc3	97	44.727	ENSMNEG00000033950	RNPC3	95	44.747	Macaca_nemestrina
ENSEBUG00000002068	rnpc3	75	41.327	ENSMNEG00000029209	-	91	39.130	Macaca_nemestrina
ENSEBUG00000002068	rnpc3	97	48.242	ENSMLEG00000033628	RNPC3	95	48.249	Mandrillus_leucophaeus
ENSEBUG00000002068	rnpc3	75	43.333	ENSMLEG00000034644	-	77	43.112	Mandrillus_leucophaeus
ENSEBUG00000002068	rnpc3	97	47.868	ENSMAMG00000007496	rnpc3	97	48.162	Mastacembelus_armatus
ENSEBUG00000002068	rnpc3	98	49.328	ENSMZEG00005020233	rnpc3	97	49.234	Maylandia_zebra
ENSEBUG00000002068	rnpc3	90	47.558	ENSMGAG00000006381	RNPC3	100	47.761	Meleagris_gallopavo
ENSEBUG00000002068	rnpc3	97	47.647	ENSMAUG00000001358	Rnpc3	95	47.656	Mesocricetus_auratus
ENSEBUG00000002068	rnpc3	97	48.141	ENSMICG00000029591	RNPC3	95	48.438	Microcebus_murinus
ENSEBUG00000002068	rnpc3	97	46.863	ENSMOCG00000013423	Rnpc3	94	48.148	Microtus_ochrogaster
ENSEBUG00000002068	rnpc3	96	46.733	ENSMMOG00000005309	rnpc3	97	46.863	Mola_mola
ENSEBUG00000002068	rnpc3	97	48.310	ENSMODG00000002946	RNPC3	95	47.913	Monodelphis_domestica
ENSEBUG00000002068	rnpc3	96	49.705	ENSMALG00000015471	rnpc3	97	50.098	Monopterus_albus
ENSEBUG00000002068	rnpc3	97	48.509	MGP_CAROLIEiJ_G0025555	Rnpc3	96	47.826	Mus_caroli
ENSEBUG00000002068	rnpc3	97	47.913	ENSMUSG00000027981	Rnpc3	99	46.347	Mus_musculus
ENSEBUG00000002068	rnpc3	97	47.544	MGP_PahariEiJ_G0027001	Rnpc3	96	46.875	Mus_pahari
ENSEBUG00000002068	rnpc3	97	46.322	MGP_SPRETEiJ_G0026505	Rnpc3	96	47.817	Mus_spretus
ENSEBUG00000002068	rnpc3	97	49.407	ENSMPUG00000007349	RNPC3	94	48.228	Mustela_putorius_furo
ENSEBUG00000002068	rnpc3	97	47.714	ENSMLUG00000028743	RNPC3	95	47.222	Myotis_lucifugus
ENSEBUG00000002068	rnpc3	97	47.750	ENSNGAG00000010939	Rnpc3	95	47.287	Nannospalax_galili
ENSEBUG00000002068	rnpc3	98	50.586	ENSNBRG00000012196	rnpc3	96	49.618	Neolamprologus_brichardi
ENSEBUG00000002068	rnpc3	97	48.627	ENSNLEG00000012013	RNPC3	95	48.633	Nomascus_leucogenys
ENSEBUG00000002068	rnpc3	97	47.036	ENSODEG00000007612	RNPC3	95	48.024	Octodon_degus
ENSEBUG00000002068	rnpc3	98	50.965	ENSONIG00000004770	rnpc3	99	51.186	Oreochromis_niloticus
ENSEBUG00000002068	rnpc3	92	46.708	ENSOANG00000008220	RNPC3	100	46.914	Ornithorhynchus_anatinus
ENSEBUG00000002068	rnpc3	97	48.323	ENSOCUG00000004016	RNPC3	95	48.054	Oryctolagus_cuniculus
ENSEBUG00000002068	rnpc3	97	50.000	ENSORLG00000005694	rnpc3	97	49.903	Oryzias_latipes
ENSEBUG00000002068	rnpc3	97	50.295	ENSORLG00020005513	rnpc3	97	50.196	Oryzias_latipes_hni
ENSEBUG00000002068	rnpc3	97	49.705	ENSORLG00015002179	rnpc3	97	49.608	Oryzias_latipes_hsok
ENSEBUG00000002068	rnpc3	99	50.095	ENSOMEG00000017737	rnpc3	100	50.190	Oryzias_melastigma
ENSEBUG00000002068	rnpc3	97	48.235	ENSOGAG00000026182	RNPC3	95	48.532	Otolemur_garnettii
ENSEBUG00000002068	rnpc3	97	48.617	ENSOARG00000018719	RNPC3	95	48.819	Ovis_aries
ENSEBUG00000002068	rnpc3	97	48.337	ENSPPAG00000037459	RNPC3	95	48.343	Pan_paniscus
ENSEBUG00000002068	rnpc3	98	39.612	ENSPPAG00000030278	-	98	40.655	Pan_paniscus
ENSEBUG00000002068	rnpc3	97	49.020	ENSPPRG00000020246	RNPC3	94	48.538	Panthera_pardus
ENSEBUG00000002068	rnpc3	97	49.020	ENSPTIG00000009887	RNPC3	96	48.538	Panthera_tigris_altaica
ENSEBUG00000002068	rnpc3	97	48.728	ENSPTRG00000033902	RNPC3	95	48.733	Pan_troglodytes
ENSEBUG00000002068	rnpc3	98	40.741	ENSPTRG00000044227	-	98	41.040	Pan_troglodytes
ENSEBUG00000002068	rnpc3	97	38.492	ENSPANG00000029957	-	96	38.492	Papio_anubis
ENSEBUG00000002068	rnpc3	97	48.141	ENSPANG00000012137	RNPC3	95	48.148	Papio_anubis
ENSEBUG00000002068	rnpc3	97	50.391	ENSPKIG00000008828	rnpc3	96	52.335	Paramormyrops_kingsleyae
ENSEBUG00000002068	rnpc3	65	47.093	ENSPSIG00000007396	RNPC3	100	48.246	Pelodiscus_sinensis
ENSEBUG00000002068	rnpc3	97	46.589	ENSPMGG00000011742	rnpc3	97	50.392	Periophthalmus_magnuspinnatus
ENSEBUG00000002068	rnpc3	90	46.414	ENSPEMG00000020112	Rnpc3	100	46.610	Peromyscus_maniculatus_bairdii
ENSEBUG00000002068	rnpc3	51	55.556	ENSPMAG00000003778	rnpc3	98	51.036	Petromyzon_marinus
ENSEBUG00000002068	rnpc3	97	48.907	ENSPCIG00000004415	-	95	48.509	Phascolarctos_cinereus
ENSEBUG00000002068	rnpc3	96	50.197	ENSPFOG00000009895	rnpc3	97	50.584	Poecilia_formosa
ENSEBUG00000002068	rnpc3	96	50.197	ENSPLAG00000012023	rnpc3	96	50.491	Poecilia_latipinna
ENSEBUG00000002068	rnpc3	96	50.197	ENSPMEG00000003663	rnpc3	97	50.584	Poecilia_mexicana
ENSEBUG00000002068	rnpc3	96	50.197	ENSPREG00000010206	rnpc3	96	50.491	Poecilia_reticulata
ENSEBUG00000002068	rnpc3	81	43.357	ENSPPYG00000001102	RNPC3	93	43.823	Pongo_abelii
ENSEBUG00000002068	rnpc3	98	50.195	ENSPNYG00000020603	rnpc3	97	50.097	Pundamilia_nyererei
ENSEBUG00000002068	rnpc3	76	56.682	ENSPNAG00000000524	rnpc3	74	55.300	Pygocentrus_nattereri
ENSEBUG00000002068	rnpc3	97	48.235	ENSRNOG00000017310	Rnpc3	95	47.563	Rattus_norvegicus
ENSEBUG00000002068	rnpc3	97	43.080	ENSRBIG00000043897	RNPC3	95	44.078	Rhinopithecus_bieti
ENSEBUG00000002068	rnpc3	97	48.538	ENSRROG00000032334	RNPC3	95	48.544	Rhinopithecus_roxellana
ENSEBUG00000002068	rnpc3	97	47.937	ENSSBOG00000024473	RNPC3	95	48.141	Saimiri_boliviensis_boliviensis
ENSEBUG00000002068	rnpc3	97	48.708	ENSSHAG00000011859	RNPC3	95	48.310	Sarcophilus_harrisii
ENSEBUG00000002068	rnpc3	96	50.984	ENSSFOG00015013055	rnpc3	98	52.071	Scleropages_formosus
ENSEBUG00000002068	rnpc3	97	47.977	ENSSMAG00000020346	rnpc3	97	48.362	Scophthalmus_maximus
ENSEBUG00000002068	rnpc3	99	50.476	ENSSDUG00000006600	rnpc3	99	50.380	Seriola_dumerili
ENSEBUG00000002068	rnpc3	99	50.286	ENSSLDG00000007979	rnpc3	99	50.380	Seriola_lalandi_dorsalis
ENSEBUG00000002068	rnpc3	66	61.006	ENSSPUG00000003872	-	92	46.047	Sphenodon_punctatus
ENSEBUG00000002068	rnpc3	97	46.654	ENSSPUG00000008539	-	94	46.654	Sphenodon_punctatus
ENSEBUG00000002068	rnpc3	96	50.000	ENSSPAG00000005633	rnpc3	96	51.779	Stegastes_partitus
ENSEBUG00000002068	rnpc3	97	47.732	ENSSSCG00000037254	RNPC3	95	47.843	Sus_scrofa
ENSEBUG00000002068	rnpc3	90	47.021	ENSTGUG00000004795	-	100	47.660	Taeniopygia_guttata
ENSEBUG00000002068	rnpc3	96	51.076	ENSTNIG00000018963	rnpc3	97	51.076	Tetraodon_nigroviridis
ENSEBUG00000002068	rnpc3	97	48.728	ENSUMAG00000007775	RNPC3	96	47.563	Ursus_maritimus
ENSEBUG00000002068	rnpc3	97	48.718	ENSVVUG00000000331	RNPC3	94	48.919	Vulpes_vulpes
ENSEBUG00000002068	rnpc3	98	41.905	ENSXETG00000025027	rnpc3	97	41.098	Xenopus_tropicalis
ENSEBUG00000002068	rnpc3	50	52.075	ENSXCOG00000005013	rnpc3	96	49.318	Xiphophorus_couchianus
ENSEBUG00000002068	rnpc3	96	49.219	ENSXMAG00000006495	rnpc3	96	49.609	Xiphophorus_maculatus