EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000003540 (Gene tree)
Gene ID: -
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 155596 bases
Position: chrFYBX02000120.1:15637-171232
Accession: ZDB-GENE-030131-5277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000005173	RRM_1	PF00076.22	9.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000005611	-	1509	-	ENSEBUP00000005173	502 (aa)	-	-
ENSEBUT00000005631	-	7025	-	ENSEBUP00000005193	459 (aa)	-	-
ENSEBUT00000005643	-	7025	-	ENSEBUP00000005205	459 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000003540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000003540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000003540	cpsf6	96	42.424	ENSG00000149532	CPSF7	91	58.235	Homo_sapiens
ENSEBUG00000003540	cpsf6	67	79.167	ENSACLG00000026325	cpsf6	85	62.914	Astatotilapia_calliptera
ENSEBUG00000003540	cpsf6	68	80.723	ENSAMXG00000016745	CPSF6	93	53.922	Astyanax_mexicanus
ENSEBUG00000003540	cpsf6	96	42.424	ENSCJAG00000019282	CPSF7	84	58.480	Callithrix_jacchus
ENSEBUG00000003540	cpsf6	64	80.838	ENSTSYG00000008591	CPSF6	93	59.746	Carlito_syrichta
ENSEBUG00000003540	cpsf6	67	66.667	ENSCPBG00000013322	CPSF6	79	63.787	Chrysemys_picta_bellii
ENSEBUG00000003540	cpsf6	67	77.381	ENSCSEG00000008967	cpsf6	94	55.283	Cynoglossus_semilaevis
ENSEBUG00000003540	cpsf6	83	36.726	ENSCSEG00000001956	CPSF7	63	38.144	Cynoglossus_semilaevis
ENSEBUG00000003540	cpsf6	67	78.571	ENSCVAG00000014857	cpsf6	90	60.984	Cyprinodon_variegatus
ENSEBUG00000003540	cpsf6	96	42.626	ENSDNOG00000018517	CPSF7	84	59.064	Dasypus_novemcinctus
ENSEBUG00000003540	cpsf6	69	61.202	ENSETEG00000002097	CPSF6	75	59.783	Echinops_telfairi
ENSEBUG00000003540	cpsf6	57	64.545	ENSECAG00000018521	CPSF7	86	59.064	Equus_caballus
ENSEBUG00000003540	cpsf6	54	62.931	ENSEEUG00000005966	-	67	62.931	Erinaceus_europaeus
ENSEBUG00000003540	cpsf6	96	42.424	ENSFCAG00000013677	CPSF7	86	59.064	Felis_catus
ENSEBUG00000003540	cpsf6	61	60.150	ENSFALG00000011927	CPSF7	76	59.649	Ficedula_albicollis
ENSEBUG00000003540	cpsf6	54	66.667	ENSFALG00000010157	CPSF6	78	63.787	Ficedula_albicollis
ENSEBUG00000003540	cpsf6	68	77.976	ENSFHEG00000019693	cpsf6	87	53.219	Fundulus_heteroclitus
ENSEBUG00000003540	cpsf6	59	86.179	ENSGMOG00000012951	cpsf6	53	86.179	Gadus_morhua
ENSEBUG00000003540	cpsf6	67	66.667	ENSGAGG00000010228	CPSF6	79	63.787	Gopherus_agassizii
ENSEBUG00000003540	cpsf6	67	79.167	ENSHBUG00000005998	cpsf6	94	55.166	Haplochromis_burtoni
ENSEBUG00000003540	cpsf6	98	39.641	ENSHGLG00100013933	-	98	43.058	Heterocephalus_glaber_male
ENSEBUG00000003540	cpsf6	68	82.036	ENSKMAG00000014794	cpsf6	94	56.061	Kryptolebias_marmoratus
ENSEBUG00000003540	cpsf6	67	76.786	ENSLBEG00000015762	cpsf6	95	58.576	Labrus_bergylta
ENSEBUG00000003540	cpsf6	87	31.591	ENSLBEG00000000947	CPSF7	84	48.966	Labrus_bergylta
ENSEBUG00000003540	cpsf6	69	46.465	ENSLACG00000005542	CPSF7	72	44.565	Latimeria_chalumnae
ENSEBUG00000003540	cpsf6	68	80.357	ENSLOCG00000016190	cpsf6	67	80.588	Lepisosteus_oculatus
ENSEBUG00000003540	cpsf6	67	78.571	ENSMAMG00000010385	cpsf6	94	54.631	Mastacembelus_armatus
ENSEBUG00000003540	cpsf6	67	79.167	ENSMZEG00005007975	cpsf6	94	55.166	Maylandia_zebra
ENSEBUG00000003540	cpsf6	67	79.641	ENSMALG00000014908	cpsf6	77	80.588	Monopterus_albus
ENSEBUG00000003540	cpsf6	79	73.759	ENSMLUG00000028728	-	80	73.292	Myotis_lucifugus
ENSEBUG00000003540	cpsf6	73	49.772	ENSODEG00000007109	-	100	42.620	Octodon_degus
ENSEBUG00000003540	cpsf6	66	68.478	ENSOANG00000005944	CPSF6	52	88.710	Ornithorhynchus_anatinus
ENSEBUG00000003540	cpsf6	99	39.377	ENSOCUG00000024726	CPSF7	64	60.234	Oryctolagus_cuniculus
ENSEBUG00000003540	cpsf6	96	39.884	ENSOARG00000012937	CPSF7	67	60.234	Ovis_aries
ENSEBUG00000003540	cpsf6	78	53.604	ENSPPRG00000008538	CPSF7	72	60.819	Panthera_pardus
ENSEBUG00000003540	cpsf6	60	88.095	ENSPANG00000011641	CPSF6	93	62.062	Papio_anubis
ENSEBUG00000003540	cpsf6	88	37.445	ENSPCIG00000002551	CPSF7	72	67.442	Phascolarctos_cinereus
ENSEBUG00000003540	cpsf6	67	77.381	ENSPLAG00000005715	cpsf6	94	55.577	Poecilia_latipinna
ENSEBUG00000003540	cpsf6	67	77.381	ENSPMEG00000001353	cpsf6	94	55.577	Poecilia_mexicana
ENSEBUG00000003540	cpsf6	67	77.381	ENSPREG00000004417	cpsf6	90	56.579	Poecilia_reticulata
ENSEBUG00000003540	cpsf6	67	79.167	ENSPNYG00000020315	cpsf6	85	62.914	Pundamilia_nyererei
ENSEBUG00000003540	cpsf6	73	42.202	ENSPNAG00000015073	CPSF7	75	42.000	Pygocentrus_nattereri
ENSEBUG00000003540	cpsf6	96	42.424	ENSRBIG00000031429	CPSF7	86	58.480	Rhinopithecus_bieti
ENSEBUG00000003540	cpsf6	67	78.571	ENSSMAG00000000471	cpsf6	84	60.265	Scophthalmus_maximus
ENSEBUG00000003540	cpsf6	67	79.042	ENSSARG00000006743	CPSF6	58	81.176	Sorex_araneus
ENSEBUG00000003540	cpsf6	68	66.834	ENSSPUG00000001238	CPSF6	80	61.582	Sphenodon_punctatus
ENSEBUG00000003540	cpsf6	67	79.042	ENSSPAG00000013906	cpsf6	94	55.638	Stegastes_partitus
ENSEBUG00000003540	cpsf6	96	42.626	ENSSSCG00000013083	CPSF7	84	59.064	Sus_scrofa
ENSEBUG00000003540	cpsf6	96	35.787	ENSVVUG00000004939	CPSF7	84	59.064	Vulpes_vulpes
ENSEBUG00000003540	cpsf6	98	38.776	ENSXETG00000006715	cpsf7	54	44.444	Xenopus_tropicalis
ENSEBUG00000003540	cpsf6	67	77.381	ENSXMAG00000003459	cpsf6	85	60.797	Xiphophorus_maculatus