EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000003739 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 289756 bases
Position: chrFYBX02008706.1:2474981-2764736
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000005578	EST1	PF10374.9	1e-20	1	1
ENSEBUP00000005578	EST1_DNA_bind	PF10373.9	1e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000006018	-	2649	-	ENSEBUP00000005578	882 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000003739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000003739's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000003739	smg5	98	46.324	ENSG00000198952	SMG5	90	46.921	Homo_sapiens
ENSEBUG00000003739	smg5	99	44.941	ENSAPOG00000019690	smg5	91	45.650	Acanthochromis_polyacanthus
ENSEBUG00000003739	smg5	98	46.539	ENSAMEG00000014458	SMG5	93	46.331	Ailuropoda_melanoleuca
ENSEBUG00000003739	smg5	99	45.511	ENSACIG00000001353	smg5	91	45.786	Amphilophus_citrinellus
ENSEBUG00000003739	smg5	98	46.211	ENSAOCG00000019483	smg5	89	46.253	Amphiprion_ocellaris
ENSEBUG00000003739	smg5	98	46.023	ENSAPEG00000022949	smg5	91	46.531	Amphiprion_percula
ENSEBUG00000003739	smg5	98	45.570	ENSATEG00000005348	smg5	91	44.969	Anabas_testudineus
ENSEBUG00000003739	smg5	98	46.772	ENSANAG00000032899	SMG5	91	46.759	Aotus_nancymaae
ENSEBUG00000003739	smg5	99	46.660	ENSACLG00000009311	smg5	91	46.561	Astatotilapia_calliptera
ENSEBUG00000003739	smg5	78	55.330	ENSAMXG00000024616	smg5	91	42.448	Astyanax_mexicanus
ENSEBUG00000003739	smg5	97	33.583	ENSBTAG00000021747	-	70	41.546	Bos_taurus
ENSEBUG00000003739	smg5	98	47.146	ENSBTAG00000009435	SMG5	90	47.240	Bos_taurus
ENSEBUG00000003739	smg5	98	46.934	ENSCJAG00000005684	SMG5	94	46.921	Callithrix_jacchus
ENSEBUG00000003739	smg5	98	47.071	ENSCAFG00000016839	SMG5	90	47.761	Canis_familiaris
ENSEBUG00000003739	smg5	98	47.071	ENSCAFG00020006061	SMG5	90	47.761	Canis_lupus_dingo
ENSEBUG00000003739	smg5	98	33.613	ENSCHIG00000006323	-	73	40.826	Capra_hircus
ENSEBUG00000003739	smg5	98	47.730	ENSCHIG00000007709	SMG5	90	47.190	Capra_hircus
ENSEBUG00000003739	smg5	98	47.458	ENSTSYG00000004099	SMG5	90	46.978	Carlito_syrichta
ENSEBUG00000003739	smg5	96	38.858	ENSCAPG00000003631	SMG5	90	38.993	Cavia_aperea
ENSEBUG00000003739	smg5	98	46.772	ENSCPOG00000015696	SMG5	90	46.448	Cavia_porcellus
ENSEBUG00000003739	smg5	98	46.829	ENSCCAG00000027409	SMG5	91	46.596	Cebus_capucinus
ENSEBUG00000003739	smg5	98	46.324	ENSCATG00000030539	SMG5	90	46.695	Cercocebus_atys
ENSEBUG00000003739	smg5	98	47.609	ENSCLAG00000003983	SMG5	90	47.564	Chinchilla_lanigera
ENSEBUG00000003739	smg5	98	46.218	ENSCSAG00000002120	SMG5	90	46.497	Chlorocebus_sabaeus
ENSEBUG00000003739	smg5	98	45.339	ENSCANG00000029208	SMG5	90	45.657	Colobus_angolensis_palliatus
ENSEBUG00000003739	smg5	98	47.937	ENSCGRG00001006336	Smg5	90	47.775	Cricetulus_griseus_chok1gshd
ENSEBUG00000003739	smg5	98	47.987	ENSCGRG00000005111	Smg5	93	47.826	Cricetulus_griseus_crigri
ENSEBUG00000003739	smg5	99	45.675	ENSCSEG00000014220	smg5	91	45.226	Cynoglossus_semilaevis
ENSEBUG00000003739	smg5	99	43.831	ENSCVAG00000000529	smg5	90	42.732	Cyprinodon_variegatus
ENSEBUG00000003739	smg5	98	42.002	ENSDARG00000041481	smg5	63	54.684	Danio_rerio
ENSEBUG00000003739	smg5	98	44.550	ENSDNOG00000000051	SMG5	90	45.687	Dasypus_novemcinctus
ENSEBUG00000003739	smg5	98	48.038	ENSDORG00000010382	Smg5	90	48.250	Dipodomys_ordii
ENSEBUG00000003739	smg5	67	69.903	ENSETEG00000010336	SMG5	66	69.903	Echinops_telfairi
ENSEBUG00000003739	smg5	98	46.489	ENSEASG00005019122	SMG5	90	46.482	Equus_asinus_asinus
ENSEBUG00000003739	smg5	98	46.858	ENSECAG00000001389	SMG5	90	46.482	Equus_caballus
ENSEBUG00000003739	smg5	70	54.802	ENSEEUG00000012690	SMG5	66	54.802	Erinaceus_europaeus
ENSEBUG00000003739	smg5	99	45.073	ENSELUG00000012585	smg5	91	44.596	Esox_lucius
ENSEBUG00000003739	smg5	98	45.714	ENSFCAG00000011783	SMG5	90	46.872	Felis_catus
ENSEBUG00000003739	smg5	55	48.864	ENSFALG00000001166	-	84	50.787	Ficedula_albicollis
ENSEBUG00000003739	smg5	98	48.562	ENSFDAG00000017388	SMG5	93	48.514	Fukomys_damarensis
ENSEBUG00000003739	smg5	94	45.465	ENSFHEG00000013939	smg5	90	45.216	Fundulus_heteroclitus
ENSEBUG00000003739	smg5	80	51.954	ENSGMOG00000007310	smg5	66	52.258	Gadus_morhua
ENSEBUG00000003739	smg5	98	46.743	ENSGALG00000029918	-	77	54.194	Gallus_gallus
ENSEBUG00000003739	smg5	88	53.465	ENSGAFG00000021691	smg5	60	58.929	Gambusia_affinis
ENSEBUG00000003739	smg5	78	55.721	ENSGACG00000013142	smg5	64	55.721	Gasterosteus_aculeatus
ENSEBUG00000003739	smg5	98	46.324	ENSGGOG00000010932	SMG5	90	46.815	Gorilla_gorilla
ENSEBUG00000003739	smg5	99	45.675	ENSHBUG00000008654	smg5	91	45.969	Haplochromis_burtoni
ENSEBUG00000003739	smg5	98	46.941	ENSHGLG00000019152	SMG5	90	47.021	Heterocephalus_glaber_female
ENSEBUG00000003739	smg5	95	45.879	ENSHGLG00100015948	SMG5	97	46.280	Heterocephalus_glaber_male
ENSEBUG00000003739	smg5	79	53.518	ENSHCOG00000010229	smg5	67	53.518	Hippocampus_comes
ENSEBUG00000003739	smg5	88	56.091	ENSIPUG00000006624	Smg5	92	43.409	Ictalurus_punctatus
ENSEBUG00000003739	smg5	98	46.921	ENSSTOG00000001780	SMG5	90	47.609	Ictidomys_tridecemlineatus
ENSEBUG00000003739	smg5	98	47.302	ENSJJAG00000022763	Smg5	90	47.564	Jaculus_jaculus
ENSEBUG00000003739	smg5	89	53.563	ENSKMAG00000014586	smg5	63	53.448	Kryptolebias_marmoratus
ENSEBUG00000003739	smg5	99	47.059	ENSLBEG00000002145	smg5	90	45.923	Labrus_bergylta
ENSEBUG00000003739	smg5	88	54.707	ENSLOCG00000008380	smg5	63	54.707	Lepisosteus_oculatus
ENSEBUG00000003739	smg5	99	45.645	ENSLAFG00000006241	SMG5	91	46.463	Loxodonta_africana
ENSEBUG00000003739	smg5	98	46.324	ENSMFAG00000045357	SMG5	90	46.603	Macaca_fascicularis
ENSEBUG00000003739	smg5	98	47.216	ENSMMUG00000000090	SMG5	90	47.323	Macaca_mulatta
ENSEBUG00000003739	smg5	98	46.324	ENSMNEG00000044425	SMG5	90	46.497	Macaca_nemestrina
ENSEBUG00000003739	smg5	98	43.069	ENSMLEG00000041192	SMG5	90	43.422	Mandrillus_leucophaeus
ENSEBUG00000003739	smg5	88	53.350	ENSMAMG00000010683	smg5	63	53.713	Mastacembelus_armatus
ENSEBUG00000003739	smg5	99	45.236	ENSMZEG00005015815	smg5	92	44.340	Maylandia_zebra
ENSEBUG00000003739	smg5	59	40.753	ENSMZEG00005016543	smg5	89	40.582	Maylandia_zebra
ENSEBUG00000003739	smg5	98	47.720	ENSMAUG00000010381	Smg5	90	47.826	Mesocricetus_auratus
ENSEBUG00000003739	smg5	98	46.971	ENSMICG00000002257	SMG5	90	46.652	Microcebus_murinus
ENSEBUG00000003739	smg5	98	47.335	ENSMOCG00000016590	Smg5	90	46.978	Microtus_ochrogaster
ENSEBUG00000003739	smg5	78	50.985	ENSMMOG00000017199	smg5	63	50.985	Mola_mola
ENSEBUG00000003739	smg5	74	30.323	ENSMODG00000004735	-	79	30.225	Monodelphis_domestica
ENSEBUG00000003739	smg5	92	45.588	ENSMODG00000016901	SMG5	96	45.753	Monodelphis_domestica
ENSEBUG00000003739	smg5	88	51.733	ENSMALG00000010375	smg5	63	51.733	Monopterus_albus
ENSEBUG00000003739	smg5	98	48.038	MGP_CAROLIEiJ_G0025163	Smg5	100	64.804	Mus_caroli
ENSEBUG00000003739	smg5	98	48.144	ENSMUSG00000001415	Smg5	99	64.804	Mus_musculus
ENSEBUG00000003739	smg5	98	47.352	MGP_PahariEiJ_G0026606	Smg5	100	65.363	Mus_pahari
ENSEBUG00000003739	smg5	98	48.038	MGP_SPRETEiJ_G0026104	Smg5	100	64.804	Mus_spretus
ENSEBUG00000003739	smg5	93	46.300	ENSMPUG00000004546	SMG5	92	46.704	Mustela_putorius_furo
ENSEBUG00000003739	smg5	98	47.352	ENSMLUG00000008518	SMG5	90	47.402	Myotis_lucifugus
ENSEBUG00000003739	smg5	98	47.826	ENSNGAG00000020706	Smg5	90	47.771	Nannospalax_galili
ENSEBUG00000003739	smg5	80	41.190	ENSNGAG00000012101	-	91	33.584	Nannospalax_galili
ENSEBUG00000003739	smg5	99	46.063	ENSNBRG00000004332	smg5	92	45.455	Neolamprologus_brichardi
ENSEBUG00000003739	smg5	98	46.267	ENSNLEG00000012439	SMG5	90	46.546	Nomascus_leucogenys
ENSEBUG00000003739	smg5	98	46.531	ENSMEUG00000012834	SMG5	90	46.269	Notamacropus_eugenii
ENSEBUG00000003739	smg5	98	47.065	ENSODEG00000012237	SMG5	90	47.660	Octodon_degus
ENSEBUG00000003739	smg5	82	51.584	ENSONIG00000008632	smg5	63	53.790	Oreochromis_niloticus
ENSEBUG00000003739	smg5	98	47.078	ENSOCUG00000012886	SMG5	93	46.865	Oryctolagus_cuniculus
ENSEBUG00000003739	smg5	74	37.685	ENSOCUG00000023338	-	76	37.685	Oryctolagus_cuniculus
ENSEBUG00000003739	smg5	77	53.448	ENSORLG00000016239	smg5	66	53.827	Oryzias_latipes
ENSEBUG00000003739	smg5	99	45.815	ENSORLG00020013127	smg5	91	45.349	Oryzias_latipes_hni
ENSEBUG00000003739	smg5	99	46.368	ENSORLG00015019014	smg5	91	45.732	Oryzias_latipes_hsok
ENSEBUG00000003739	smg5	79	45.664	ENSOMEG00000021330	smg5	77	56.041	Oryzias_melastigma
ENSEBUG00000003739	smg5	98	46.318	ENSOGAG00000004966	SMG5	90	46.702	Otolemur_garnettii
ENSEBUG00000003739	smg5	99	33.583	ENSOARG00000011963	-	73	40.984	Ovis_aries
ENSEBUG00000003739	smg5	98	47.513	ENSOARG00000005778	SMG5	90	46.971	Ovis_aries
ENSEBUG00000003739	smg5	98	46.324	ENSPPAG00000011996	SMG5	90	46.709	Pan_paniscus
ENSEBUG00000003739	smg5	98	46.261	ENSPPRG00000011901	SMG5	93	47.034	Panthera_pardus
ENSEBUG00000003739	smg5	98	44.565	ENSPTIG00000007892	SMG5	92	45.217	Panthera_tigris_altaica
ENSEBUG00000003739	smg5	98	46.324	ENSPTRG00000023925	SMG5	90	46.709	Pan_troglodytes
ENSEBUG00000003739	smg5	98	46.324	ENSPTRG00000049282	-	90	46.709	Pan_troglodytes
ENSEBUG00000003739	smg5	98	46.324	ENSPANG00000011201	SMG5	90	46.603	Papio_anubis
ENSEBUG00000003739	smg5	98	43.983	ENSPKIG00000009402	smg5	90	44.099	Paramormyrops_kingsleyae
ENSEBUG00000003739	smg5	98	47.524	ENSPSIG00000015198	SMG5	93	46.114	Pelodiscus_sinensis
ENSEBUG00000003739	smg5	98	44.365	ENSPMGG00000010465	smg5	91	42.974	Periophthalmus_magnuspinnatus
ENSEBUG00000003739	smg5	98	47.402	ENSPEMG00000001819	Smg5	90	47.028	Peromyscus_maniculatus_bairdii
ENSEBUG00000003739	smg5	98	47.335	ENSPCIG00000018938	SMG5	90	47.071	Phascolarctos_cinereus
ENSEBUG00000003739	smg5	88	53.465	ENSPFOG00000010191	smg5	64	53.695	Poecilia_formosa
ENSEBUG00000003739	smg5	78	53.465	ENSPLAG00000009332	smg5	64	53.695	Poecilia_latipinna
ENSEBUG00000003739	smg5	88	53.465	ENSPMEG00000014105	smg5	91	44.831	Poecilia_mexicana
ENSEBUG00000003739	smg5	88	53.766	ENSPREG00000017713	smg5	79	53.695	Poecilia_reticulata
ENSEBUG00000003739	smg5	98	46.324	ENSPPYG00000000723	SMG5	90	46.709	Pongo_abelii
ENSEBUG00000003739	smg5	75	66.292	ENSPCAG00000008412	SMG5	72	66.292	Procavia_capensis
ENSEBUG00000003739	smg5	98	47.078	ENSPCOG00000004741	SMG5	90	47.084	Propithecus_coquereli
ENSEBUG00000003739	smg5	92	72.000	ENSPVAG00000016748	SMG5	85	72.000	Pteropus_vampyrus
ENSEBUG00000003739	smg5	82	51.584	ENSPNYG00000013397	smg5	63	53.790	Pundamilia_nyererei
ENSEBUG00000003739	smg5	91	49.702	ENSPNAG00000028363	smg5	64	55.443	Pygocentrus_nattereri
ENSEBUG00000003739	smg5	98	47.826	ENSRNOG00000019590	Smg5	90	47.665	Rattus_norvegicus
ENSEBUG00000003739	smg5	98	46.000	ENSRBIG00000027428	SMG5	90	46.277	Rhinopithecus_bieti
ENSEBUG00000003739	smg5	98	45.895	ENSRROG00000030035	SMG5	90	46.170	Rhinopithecus_roxellana
ENSEBUG00000003739	smg5	98	46.779	ENSSBOG00000033339	SMG5	90	46.709	Saimiri_boliviensis_boliviensis
ENSEBUG00000003739	smg5	98	46.688	ENSSHAG00000014163	SMG5	93	47.246	Sarcophilus_harrisii
ENSEBUG00000003739	smg5	67	31.250	ENSSHAG00000000935	-	78	33.079	Sarcophilus_harrisii
ENSEBUG00000003739	smg5	74	34.783	ENSSHAG00000000561	-	76	34.527	Sarcophilus_harrisii
ENSEBUG00000003739	smg5	98	44.909	ENSSFOG00015024175	smg5	90	45.955	Scleropages_formosus
ENSEBUG00000003739	smg5	88	53.528	ENSSDUG00000007122	smg5	79	53.415	Seriola_dumerili
ENSEBUG00000003739	smg5	88	54.054	ENSSLDG00000011418	smg5	91	42.241	Seriola_lalandi_dorsalis
ENSEBUG00000003739	smg5	95	39.869	ENSSARG00000012484	SMG5	85	51.590	Sorex_araneus
ENSEBUG00000003739	smg5	98	46.146	ENSSPAG00000014266	smg5	90	45.784	Stegastes_partitus
ENSEBUG00000003739	smg5	95	39.607	ENSSSCG00000039308	-	88	39.471	Sus_scrofa
ENSEBUG00000003739	smg5	98	47.558	ENSSSCG00000006490	-	92	46.274	Sus_scrofa
ENSEBUG00000003739	smg5	96	52.812	ENSTRUG00000012580	smg5	91	45.291	Takifugu_rubripes
ENSEBUG00000003739	smg5	99	44.363	ENSTNIG00000010303	smg5	91	44.806	Tetraodon_nigroviridis
ENSEBUG00000003739	smg5	94	44.518	ENSTTRG00000001401	SMG5	87	44.653	Tursiops_truncatus
ENSEBUG00000003739	smg5	98	47.154	ENSUAMG00000013721	SMG5	90	46.575	Ursus_americanus
ENSEBUG00000003739	smg5	99	44.920	ENSUMAG00000018041	SMG5	91	44.374	Ursus_maritimus
ENSEBUG00000003739	smg5	90	69.767	ENSVPAG00000009446	SMG5	87	69.767	Vicugna_pacos
ENSEBUG00000003739	smg5	98	46.575	ENSVVUG00000005887	SMG5	90	47.021	Vulpes_vulpes
ENSEBUG00000003739	smg5	55	68.519	ENSXCOG00000004379	smg5	56	68.519	Xiphophorus_couchianus
ENSEBUG00000003739	smg5	89	53.465	ENSXMAG00000013499	smg5	91	44.620	Xiphophorus_maculatus