EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000003775 (Gene tree)
Gene ID: -
Gene Symbol: prdm4
Alias: si:dkey-180p18.8
Full Name: PR domain containing 4
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 321891 bases
Position: chrFYBX02000119.1:636771-958661
Accession: ZDB-GENE-041210-131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000005701	zf-C2H2	PF00096.26	3.2e-19	1	3
ENSEBUP00000005701	zf-C2H2	PF00096.26	3.2e-19	2	3
ENSEBUP00000005701	zf-C2H2	PF00096.26	3.2e-19	3	3
ENSEBUP00000005663	zf-C2H2	PF00096.26	3.4e-19	1	3
ENSEBUP00000005663	zf-C2H2	PF00096.26	3.4e-19	2	3
ENSEBUP00000005663	zf-C2H2	PF00096.26	3.4e-19	3	3
ENSEBUP00000005614	zf-C2H2	PF00096.26	4.8e-19	1	3
ENSEBUP00000005614	zf-C2H2	PF00096.26	4.8e-19	2	3
ENSEBUP00000005614	zf-C2H2	PF00096.26	4.8e-19	3	3
ENSEBUP00000005686	zf-C2H2	PF00096.26	2.8e-17	1	3
ENSEBUP00000005686	zf-C2H2	PF00096.26	2.8e-17	2	3
ENSEBUP00000005686	zf-C2H2	PF00096.26	2.8e-17	3	3
ENSEBUP00000005635	zf-C2H2	PF00096.26	4.4e-17	1	3
ENSEBUP00000005635	zf-C2H2	PF00096.26	4.4e-17	2	3
ENSEBUP00000005635	zf-C2H2	PF00096.26	4.4e-17	3	3
ENSEBUP00000005701	zf-met	PF12874.7	8.7e-10	1	1
ENSEBUP00000005663	zf-met	PF12874.7	9.2e-10	1	1
ENSEBUP00000005614	zf-met	PF12874.7	1.3e-09	1	1
ENSEBUP00000005686	zf-met	PF12874.7	1.2e-07	1	1
ENSEBUP00000005635	zf-met	PF12874.7	1.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000006104	-	4517	-	ENSEBUP00000005663	691 (aa)	-	-
ENSEBUT00000006025	-	1364	-	ENSEBUP00000005585	381 (aa)	-	-
ENSEBUT00000006055	-	2594	-	ENSEBUP00000005614	730 (aa)	-	-
ENSEBUT00000006128	-	3522	-	ENSEBUP00000005686	739 (aa)	-	-
ENSEBUT00000006076	-	2883	-	ENSEBUP00000005635	788 (aa)	-	-
ENSEBUT00000006000	-	5377	-	ENSEBUP00000005560	381 (aa)	-	-
ENSEBUT00000006144	-	3640	-	ENSEBUP00000005701	685 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000003775's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000003775's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000003775	prdm4	99	46.291	ENSG00000110851	PRDM4	96	62.500	Homo_sapiens
ENSEBUG00000003775	prdm4	99	45.994	ENSAMEG00000016174	PRDM4	93	45.582	Ailuropoda_melanoleuca
ENSEBUG00000003775	prdm4	99	46.528	ENSAPLG00000009846	PRDM4	94	46.629	Anas_platyrhynchos
ENSEBUG00000003775	prdm4	99	46.186	ENSANAG00000024800	PRDM4	93	46.067	Aotus_nancymaae
ENSEBUG00000003775	prdm4	99	45.983	ENSBTAG00000012999	PRDM4	93	45.938	Bos_taurus
ENSEBUG00000003775	prdm4	98	59.677	ENSCJAG00000015261	PRDM4	92	61.017	Callithrix_jacchus
ENSEBUG00000003775	prdm4	99	46.335	ENSCAFG00000001788	PRDM4	93	45.938	Canis_familiaris
ENSEBUG00000003775	prdm4	99	46.335	ENSCAFG00020004916	PRDM4	93	45.938	Canis_lupus_dingo
ENSEBUG00000003775	prdm4	99	46.335	ENSCHIG00000019409	PRDM4	93	46.067	Capra_hircus
ENSEBUG00000003775	prdm4	99	45.908	ENSTSYG00000009248	PRDM4	93	45.787	Carlito_syrichta
ENSEBUG00000003775	prdm4	99	46.006	ENSCAPG00000013937	PRDM4	93	46.262	Cavia_aperea
ENSEBUG00000003775	prdm4	99	45.879	ENSCPOG00000022385	PRDM4	94	45.886	Cavia_porcellus
ENSEBUG00000003775	prdm4	99	46.122	ENSCCAG00000036033	PRDM4	93	45.787	Cebus_capucinus
ENSEBUG00000003775	prdm4	99	46.047	ENSCATG00000044797	PRDM4	93	45.798	Cercocebus_atys
ENSEBUG00000003775	prdm4	99	45.542	ENSCLAG00000007545	PRDM4	94	45.328	Chinchilla_lanigera
ENSEBUG00000003775	prdm4	99	45.908	ENSCSAG00000002896	PRDM4	93	45.938	Chlorocebus_sabaeus
ENSEBUG00000003775	prdm4	55	64.151	ENSCHOG00000001744	PRDM4	60	64.151	Choloepus_hoffmanni
ENSEBUG00000003775	prdm4	99	46.006	ENSCPBG00000023187	PRDM4	94	46.089	Chrysemys_picta_bellii
ENSEBUG00000003775	prdm4	99	46.047	ENSCANG00000021804	PRDM4	93	46.078	Colobus_angolensis_palliatus
ENSEBUG00000003775	prdm4	99	45.055	ENSCGRG00001015102	-	94	45.125	Cricetulus_griseus_chok1gshd
ENSEBUG00000003775	prdm4	95	44.778	ENSCGRG00000004044	-	94	44.848	Cricetulus_griseus_crigri
ENSEBUG00000003775	prdm4	99	45.631	ENSDNOG00000032478	PRDM4	99	45.787	Dasypus_novemcinctus
ENSEBUG00000003775	prdm4	99	50.459	ENSDORG00000015081	-	93	37.639	Dipodomys_ordii
ENSEBUG00000003775	prdm4	99	46.196	ENSECAG00000015423	PRDM4	95	45.915	Equus_caballus
ENSEBUG00000003775	prdm4	93	44.690	ENSEEUG00000006569	PRDM4	94	44.313	Erinaceus_europaeus
ENSEBUG00000003775	prdm4	99	44.154	ENSELUG00000015265	prdm4	95	44.183	Esox_lucius
ENSEBUG00000003775	prdm4	99	45.920	ENSFCAG00000022478	PRDM4	93	45.658	Felis_catus
ENSEBUG00000003775	prdm4	99	45.972	ENSFALG00000013342	PRDM4	94	45.810	Ficedula_albicollis
ENSEBUG00000003775	prdm4	99	45.667	ENSGALG00000012619	PRDM4	94	45.694	Gallus_gallus
ENSEBUG00000003775	prdm4	99	46.006	ENSGAGG00000002763	PRDM4	90	46.025	Gopherus_agassizii
ENSEBUG00000003775	prdm4	99	46.122	ENSGGOG00000001244	PRDM4	93	45.798	Gorilla_gorilla
ENSEBUG00000003775	prdm4	99	45.983	ENSHGLG00000004590	PRDM4	94	44.945	Heterocephalus_glaber_female
ENSEBUG00000003775	prdm4	99	45.616	ENSHGLG00100007464	PRDM4	94	45.341	Heterocephalus_glaber_male
ENSEBUG00000003775	prdm4	99	45.125	ENSIPUG00000024162	prdm4	94	42.649	Ictalurus_punctatus
ENSEBUG00000003775	prdm4	99	46.260	ENSSTOG00000016168	PRDM4	93	45.927	Ictidomys_tridecemlineatus
ENSEBUG00000003775	prdm4	70	49.133	ENSJJAG00000022448	-	79	49.693	Jaculus_jaculus
ENSEBUG00000003775	prdm4	99	46.217	ENSLACG00000007452	PRDM4	93	46.217	Latimeria_chalumnae
ENSEBUG00000003775	prdm4	61	39.801	ENSLOCG00000017092	prdm4	75	38.288	Lepisosteus_oculatus
ENSEBUG00000003775	prdm4	99	45.504	ENSLAFG00000001483	PRDM4	96	45.467	Loxodonta_africana
ENSEBUG00000003775	prdm4	99	45.908	ENSMFAG00000041862	PRDM4	93	45.938	Macaca_fascicularis
ENSEBUG00000003775	prdm4	99	45.908	ENSMMUG00000015550	PRDM4	93	45.938	Macaca_mulatta
ENSEBUG00000003775	prdm4	99	46.047	ENSMNEG00000032319	PRDM4	93	46.078	Macaca_nemestrina
ENSEBUG00000003775	prdm4	99	45.983	ENSMLEG00000039607	PRDM4	93	46.014	Mandrillus_leucophaeus
ENSEBUG00000003775	prdm4	99	44.861	ENSMGAG00000012815	PRDM4	94	44.789	Meleagris_gallopavo
ENSEBUG00000003775	prdm4	99	46.122	ENSMICG00000007807	PRDM4	93	45.798	Microcebus_murinus
ENSEBUG00000003775	prdm4	99	45.706	ENSMOCG00000000753	Prdm4	93	45.518	Microtus_ochrogaster
ENSEBUG00000003775	prdm4	99	45.920	ENSMUSG00000035529	Prdm4	94	45.570	Mus_musculus
ENSEBUG00000003775	prdm4	99	45.845	MGP_PahariEiJ_G0031398	Prdm4	94	45.492	Mus_pahari
ENSEBUG00000003775	prdm4	99	45.920	MGP_SPRETEiJ_G0016505	Prdm4	94	45.570	Mus_spretus
ENSEBUG00000003775	prdm4	99	42.265	ENSMPUG00000012238	PRDM4	93	40.915	Mustela_putorius_furo
ENSEBUG00000003775	prdm4	99	45.845	ENSMLUG00000000767	PRDM4	93	45.518	Myotis_lucifugus
ENSEBUG00000003775	prdm4	99	45.643	ENSNGAG00000018627	Prdm4	94	45.215	Nannospalax_galili
ENSEBUG00000003775	prdm4	99	46.122	ENSNLEG00000006748	PRDM4	93	45.798	Nomascus_leucogenys
ENSEBUG00000003775	prdm4	89	52.083	ENSMEUG00000004495	PRDM4	83	52.454	Notamacropus_eugenii
ENSEBUG00000003775	prdm4	86	51.837	ENSOPRG00000010192	PRDM4	82	52.101	Ochotona_princeps
ENSEBUG00000003775	prdm4	99	45.805	ENSODEG00000014750	PRDM4	94	45.927	Octodon_degus
ENSEBUG00000003775	prdm4	99	45.592	ENSOANG00000005526	PRDM4	95	45.938	Ornithorhynchus_anatinus
ENSEBUG00000003775	prdm4	98	46.348	ENSOCUG00000012859	PRDM4	97	46.175	Oryctolagus_cuniculus
ENSEBUG00000003775	prdm4	99	46.325	ENSOGAG00000011945	PRDM4	94	46.056	Otolemur_garnettii
ENSEBUG00000003775	prdm4	99	46.335	ENSOARG00000017955	PRDM4	93	46.067	Ovis_aries
ENSEBUG00000003775	prdm4	99	46.122	ENSPPAG00000038438	PRDM4	93	45.798	Pan_paniscus
ENSEBUG00000003775	prdm4	99	45.920	ENSPPRG00000004144	PRDM4	93	45.658	Panthera_pardus
ENSEBUG00000003775	prdm4	99	45.920	ENSPTIG00000005847	PRDM4	93	45.658	Panthera_tigris_altaica
ENSEBUG00000003775	prdm4	99	46.122	ENSPTRG00000005400	PRDM4	93	45.798	Pan_troglodytes
ENSEBUG00000003775	prdm4	99	45.908	ENSPANG00000022084	PRDM4	93	45.938	Papio_anubis
ENSEBUG00000003775	prdm4	99	44.489	ENSPKIG00000000875	prdm4	93	44.158	Paramormyrops_kingsleyae
ENSEBUG00000003775	prdm4	86	53.261	ENSPSIG00000012066	PRDM4	93	53.261	Pelodiscus_sinensis
ENSEBUG00000003775	prdm4	99	45.706	ENSPEMG00000014598	Prdm4	94	45.429	Peromyscus_maniculatus_bairdii
ENSEBUG00000003775	prdm4	99	45.833	ENSPCIG00000009471	PRDM4	93	46.143	Phascolarctos_cinereus
ENSEBUG00000003775	prdm4	99	46.122	ENSPPYG00000004913	PRDM4	93	45.798	Pongo_abelii
ENSEBUG00000003775	prdm4	72	43.939	ENSPCAG00000009987	PRDM4	70	44.129	Procavia_capensis
ENSEBUG00000003775	prdm4	99	46.260	ENSPCOG00000021060	PRDM4	93	45.927	Propithecus_coquereli
ENSEBUG00000003775	prdm4	99	45.354	ENSPVAG00000001596	PRDM4	93	45.000	Pteropus_vampyrus
ENSEBUG00000003775	prdm4	99	45.643	ENSRNOG00000004962	Prdm4	96	45.238	Rattus_norvegicus
ENSEBUG00000003775	prdm4	99	46.047	ENSRBIG00000035488	PRDM4	93	46.078	Rhinopithecus_bieti
ENSEBUG00000003775	prdm4	99	46.047	ENSRROG00000012779	PRDM4	93	46.078	Rhinopithecus_roxellana
ENSEBUG00000003775	prdm4	98	59.677	ENSSBOG00000000403	PRDM4	92	61.017	Saimiri_boliviensis_boliviensis
ENSEBUG00000003775	prdm4	99	47.188	ENSSFOG00015023358	prdm4	94	46.365	Scleropages_formosus
ENSEBUG00000003775	prdm4	99	45.568	ENSSSCG00000000160	PRDM4	93	45.506	Sus_scrofa
ENSEBUG00000003775	prdm4	99	45.833	ENSTGUG00000010962	-	94	45.582	Taeniopygia_guttata
ENSEBUG00000003775	prdm4	83	39.635	ENSTBEG00000001732	PRDM4	84	39.635	Tupaia_belangeri
ENSEBUG00000003775	prdm4	99	45.920	ENSTTRG00000011056	PRDM4	93	45.658	Tursiops_truncatus
ENSEBUG00000003775	prdm4	99	46.058	ENSUAMG00000022796	PRDM4	93	45.646	Ursus_americanus
ENSEBUG00000003775	prdm4	99	46.058	ENSUMAG00000017231	PRDM4	93	45.646	Ursus_maritimus
ENSEBUG00000003775	prdm4	99	45.920	ENSVPAG00000002215	PRDM4	94	45.710	Vicugna_pacos
ENSEBUG00000003775	prdm4	99	46.335	ENSVVUG00000023397	PRDM4	93	45.938	Vulpes_vulpes