EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000003891 (Gene tree)
Gene ID: -
Gene Symbol: SCAF8
Alias: KIAA1116|RBM16
Full Name: SR-related CTD associated factor 8
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 92826 bases
Position: chrFYBX02005400.1:1376719-1469544
Accession: 20959
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000005766	RRM_1	PF00076.22	6.5e-09	1	1
ENSEBUP00000005797	RRM_1	PF00076.22	7.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000006242	SCAF8-202	3098	-	ENSEBUP00000005797	1024 (aa)	-	-
ENSEBUT00000006210	SCAF8-201	3672	-	ENSEBUP00000005766	904 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000003891's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000003891's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000003891	SCAF8	53	53.307	ENSAPOG00000019615	scaf4b	61	53.901	Acanthochromis_polyacanthus
ENSEBUG00000003891	SCAF8	53	51.923	ENSAOCG00000010433	scaf4b	61	52.482	Amphiprion_ocellaris
ENSEBUG00000003891	SCAF8	53	51.923	ENSAPEG00000010913	scaf4b	61	53.191	Amphiprion_percula
ENSEBUG00000003891	SCAF8	62	45.059	ENSATEG00000011758	scaf4b	65	47.248	Anabas_testudineus
ENSEBUG00000003891	SCAF8	58	50.909	ENSACLG00000024833	scaf4b	54	59.574	Astatotilapia_calliptera
ENSEBUG00000003891	SCAF8	52	50.000	ENSCSEG00000012808	-	61	50.871	Cynoglossus_semilaevis
ENSEBUG00000003891	SCAF8	60	54.007	ENSCVAG00000009142	scaf4b	61	48.944	Cyprinodon_variegatus
ENSEBUG00000003891	SCAF8	66	51.711	ENSFHEG00000007634	scaf4b	60	50.871	Fundulus_heteroclitus
ENSEBUG00000003891	SCAF8	53	50.554	ENSKMAG00000005742	scaf4b	60	48.485	Kryptolebias_marmoratus
ENSEBUG00000003891	SCAF8	54	51.341	ENSMALG00000013825	scaf4a	50	51.389	Monopterus_albus
ENSEBUG00000003891	SCAF8	56	56.134	ENSPKIG00000022408	scaf4a	68	55.000	Paramormyrops_kingsleyae
ENSEBUG00000003891	SCAF8	54	49.035	ENSPMEG00000006666	-	59	48.399	Poecilia_mexicana
ENSEBUG00000003891	SCAF8	53	49.225	ENSPREG00000013510	scaf4b	59	48.754	Poecilia_reticulata
ENSEBUG00000003891	SCAF8	58	51.273	ENSPNYG00000010526	scaf4b	54	59.574	Pundamilia_nyererei
ENSEBUG00000003891	SCAF8	60	50.758	ENSSMAG00000003738	scaf4b	67	50.694	Scophthalmus_maximus
ENSEBUG00000003891	SCAF8	68	49.175	ENSSDUG00000012380	scaf4b	66	49.379	Seriola_dumerili
ENSEBUG00000003891	SCAF8	68	49.175	ENSSLDG00000023152	-	66	49.379	Seriola_lalandi_dorsalis