EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000004325 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 35350 bases
Position: chrFYBX02010180.1:1368620-1403969
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000006577	SF3b1	PF08920.10	8.8e-47	1	1
ENSEBUP00000006546	SF3b1	PF08920.10	1e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000007035	-	5337	-	ENSEBUP00000006577	1116 (aa)	-	-
ENSEBUT00000007002	-	6460	-	ENSEBUP00000006546	1277 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000004325's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000004325's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000004325	sf3b1	100	90.191	ENSG00000115524	SF3B1	94	96.018	Homo_sapiens
ENSEBUG00000004325	sf3b1	100	88.640	ENSAPOG00000011894	sf3b1	99	85.823	Acanthochromis_polyacanthus
ENSEBUG00000004325	sf3b1	100	90.191	ENSAMEG00000013809	SF3B1	99	87.013	Ailuropoda_melanoleuca
ENSEBUG00000004325	sf3b1	100	88.601	ENSACIG00000020910	sf3b1	96	85.780	Amphilophus_citrinellus
ENSEBUG00000004325	sf3b1	100	88.726	ENSAOCG00000004478	sf3b1	99	85.823	Amphiprion_ocellaris
ENSEBUG00000004325	sf3b1	100	88.726	ENSAPEG00000012937	sf3b1	99	85.823	Amphiprion_percula
ENSEBUG00000004325	sf3b1	100	88.630	ENSATEG00000020435	sf3b1	99	85.856	Anabas_testudineus
ENSEBUG00000004325	sf3b1	100	90.174	ENSAPLG00000003993	SF3B1	99	87.692	Anas_platyrhynchos
ENSEBUG00000004325	sf3b1	100	89.748	ENSACAG00000009612	SF3B1	99	87.030	Anolis_carolinensis
ENSEBUG00000004325	sf3b1	100	90.191	ENSANAG00000021577	SF3B1	100	89.338	Aotus_nancymaae
ENSEBUG00000004325	sf3b1	100	88.296	ENSACLG00000023470	sf3b1	99	85.290	Astatotilapia_calliptera
ENSEBUG00000004325	sf3b1	100	88.640	ENSAMXG00000002219	sf3b1	99	85.671	Astyanax_mexicanus
ENSEBUG00000004325	sf3b1	100	90.191	ENSBTAG00000008915	SF3B1	99	87.270	Bos_taurus
ENSEBUG00000004325	sf3b1	100	68.692	WBGene00011605	sftb-1	99	64.671	Caenorhabditis_elegans
ENSEBUG00000004325	sf3b1	100	90.191	ENSCJAG00000003902	SF3B1	99	87.270	Callithrix_jacchus
ENSEBUG00000004325	sf3b1	100	90.191	ENSCAFG00000010826	SF3B1	99	87.270	Canis_familiaris
ENSEBUG00000004325	sf3b1	100	90.191	ENSCAFG00020004750	SF3B1	99	87.270	Canis_lupus_dingo
ENSEBUG00000004325	sf3b1	100	90.191	ENSCHIG00000015226	SF3B1	99	87.270	Capra_hircus
ENSEBUG00000004325	sf3b1	100	90.104	ENSTSYG00000009214	SF3B1	99	87.193	Carlito_syrichta
ENSEBUG00000004325	sf3b1	100	90.191	ENSCAPG00000006547	SF3B1	99	87.080	Cavia_aperea
ENSEBUG00000004325	sf3b1	100	90.191	ENSCPOG00000009353	SF3B1	100	87.260	Cavia_porcellus
ENSEBUG00000004325	sf3b1	100	90.191	ENSCCAG00000020506	SF3B1	99	87.270	Cebus_capucinus
ENSEBUG00000004325	sf3b1	100	90.191	ENSCATG00000035735	SF3B1	99	87.270	Cercocebus_atys
ENSEBUG00000004325	sf3b1	100	90.191	ENSCLAG00000014767	SF3B1	99	87.270	Chinchilla_lanigera
ENSEBUG00000004325	sf3b1	100	90.191	ENSCSAG00000011505	SF3B1	99	87.270	Chlorocebus_sabaeus
ENSEBUG00000004325	sf3b1	83	89.863	ENSCHOG00000009860	SF3B1	75	89.863	Choloepus_hoffmanni
ENSEBUG00000004325	sf3b1	100	90.000	ENSCPBG00000021902	SF3B1	99	89.255	Chrysemys_picta_bellii
ENSEBUG00000004325	sf3b1	69	77.887	ENSCING00000002558	-	100	75.881	Ciona_intestinalis
ENSEBUG00000004325	sf3b1	100	82.847	ENSCSAVG00000002559	-	98	80.430	Ciona_savignyi
ENSEBUG00000004325	sf3b1	100	90.191	ENSCANG00000029415	SF3B1	99	87.270	Colobus_angolensis_palliatus
ENSEBUG00000004325	sf3b1	100	90.191	ENSCGRG00001016990	Sf3b1	99	87.270	Cricetulus_griseus_chok1gshd
ENSEBUG00000004325	sf3b1	100	90.191	ENSCGRG00000005301	Sf3b1	99	87.270	Cricetulus_griseus_crigri
ENSEBUG00000004325	sf3b1	100	85.220	ENSCSEG00000003860	sf3b1	99	82.555	Cynoglossus_semilaevis
ENSEBUG00000004325	sf3b1	95	89.089	ENSCVAG00000003680	sf3b1	99	86.180	Cyprinodon_variegatus
ENSEBUG00000004325	sf3b1	100	88.448	ENSDARG00000056138	sf3b1	99	85.736	Danio_rerio
ENSEBUG00000004325	sf3b1	100	90.191	ENSDNOG00000011754	SF3B1	99	87.203	Dasypus_novemcinctus
ENSEBUG00000004325	sf3b1	100	90.191	ENSDORG00000002399	Sf3b1	100	85.813	Dipodomys_ordii
ENSEBUG00000004325	sf3b1	100	78.517	FBgn0031266	Sf3b1	99	75.130	Drosophila_melanogaster
ENSEBUG00000004325	sf3b1	81	89.209	ENSETEG00000009188	SF3B1	100	85.833	Echinops_telfairi
ENSEBUG00000004325	sf3b1	100	90.104	ENSEASG00005020159	SF3B1	97	87.193	Equus_asinus_asinus
ENSEBUG00000004325	sf3b1	100	90.104	ENSECAG00000021657	SF3B1	97	87.193	Equus_caballus
ENSEBUG00000004325	sf3b1	80	98.271	ENSEEUG00000000836	SF3B1	81	98.271	Erinaceus_europaeus
ENSEBUG00000004325	sf3b1	100	87.500	ENSELUG00000005977	sf3b1	97	85.152	Esox_lucius
ENSEBUG00000004325	sf3b1	100	90.191	ENSFCAG00000005038	SF3B1	99	87.270	Felis_catus
ENSEBUG00000004325	sf3b1	100	90.261	ENSFALG00000004281	SF3B1	99	87.634	Ficedula_albicollis
ENSEBUG00000004325	sf3b1	100	90.191	ENSFDAG00000017510	SF3B1	99	87.270	Fukomys_damarensis
ENSEBUG00000004325	sf3b1	100	88.630	ENSFHEG00000014333	sf3b1	99	85.584	Fundulus_heteroclitus
ENSEBUG00000004325	sf3b1	100	88.668	ENSGMOG00000006773	sf3b1	99	85.856	Gadus_morhua
ENSEBUG00000004325	sf3b1	100	90.174	ENSGALG00000008038	SF3B1	99	87.692	Gallus_gallus
ENSEBUG00000004325	sf3b1	100	88.458	ENSGAFG00000000704	sf3b1	99	85.901	Gambusia_affinis
ENSEBUG00000004325	sf3b1	100	88.245	ENSGACG00000008839	sf3b1	99	85.780	Gasterosteus_aculeatus
ENSEBUG00000004325	sf3b1	100	90.000	ENSGAGG00000017478	SF3B1	99	87.538	Gopherus_agassizii
ENSEBUG00000004325	sf3b1	100	89.938	ENSGGOG00000009264	SF3B1	100	87.236	Gorilla_gorilla
ENSEBUG00000004325	sf3b1	99	88.362	ENSHBUG00000007705	sf3b1	99	85.344	Haplochromis_burtoni
ENSEBUG00000004325	sf3b1	100	90.191	ENSHGLG00000008285	-	99	87.270	Heterocephalus_glaber_female
ENSEBUG00000004325	sf3b1	100	88.194	ENSHGLG00100005535	-	99	85.506	Heterocephalus_glaber_male
ENSEBUG00000004325	sf3b1	100	88.003	ENSHCOG00000016775	sf3b1	99	85.432	Hippocampus_comes
ENSEBUG00000004325	sf3b1	100	90.114	ENSIPUG00000013171	sf3b1	99	87.626	Ictalurus_punctatus
ENSEBUG00000004325	sf3b1	100	90.191	ENSSTOG00000011034	SF3B1	99	87.270	Ictidomys_tridecemlineatus
ENSEBUG00000004325	sf3b1	100	90.191	ENSJJAG00000010903	Sf3b1	99	87.298	Jaculus_jaculus
ENSEBUG00000004325	sf3b1	100	88.240	ENSKMAG00000004009	sf3b1	99	85.475	Kryptolebias_marmoratus
ENSEBUG00000004325	sf3b1	100	88.648	ENSLBEG00000022208	sf3b1	99	85.977	Labrus_bergylta
ENSEBUG00000004325	sf3b1	100	86.145	ENSLACG00000014832	SF3B1	99	84.287	Latimeria_chalumnae
ENSEBUG00000004325	sf3b1	100	88.630	ENSLOCG00000003899	sf3b1	99	85.866	Lepisosteus_oculatus
ENSEBUG00000004325	sf3b1	100	90.191	ENSLAFG00000001956	SF3B1	99	87.270	Loxodonta_africana
ENSEBUG00000004325	sf3b1	100	90.191	ENSMMUG00000022430	SF3B1	99	87.270	Macaca_mulatta
ENSEBUG00000004325	sf3b1	100	90.191	ENSMNEG00000042333	SF3B1	100	89.338	Macaca_nemestrina
ENSEBUG00000004325	sf3b1	100	90.063	ENSMLEG00000026141	SF3B1	99	88.328	Mandrillus_leucophaeus
ENSEBUG00000004325	sf3b1	100	89.014	ENSMAMG00000010241	sf3b1	99	86.086	Mastacembelus_armatus
ENSEBUG00000004325	sf3b1	100	88.296	ENSMZEG00005021254	sf3b1	99	85.290	Maylandia_zebra
ENSEBUG00000004325	sf3b1	100	90.174	ENSMGAG00000007017	SF3B1	99	87.077	Meleagris_gallopavo
ENSEBUG00000004325	sf3b1	100	85.677	ENSMAUG00000009071	Sf3b1	99	83.282	Mesocricetus_auratus
ENSEBUG00000004325	sf3b1	100	90.191	ENSMICG00000013879	SF3B1	99	87.298	Microcebus_murinus
ENSEBUG00000004325	sf3b1	100	85.330	ENSMOCG00000000455	Sf3b1	99	82.848	Microtus_ochrogaster
ENSEBUG00000004325	sf3b1	81	88.830	ENSMMOG00000000475	sf3b1	99	85.505	Mola_mola
ENSEBUG00000004325	sf3b1	100	90.009	ENSMODG00000012275	SF3B1	99	87.030	Monodelphis_domestica
ENSEBUG00000004325	sf3b1	100	88.898	ENSMALG00000017211	sf3b1	99	86.738	Monopterus_albus
ENSEBUG00000004325	sf3b1	100	90.191	MGP_CAROLIEiJ_G0014141	Sf3b1	99	87.270	Mus_caroli
ENSEBUG00000004325	sf3b1	100	90.191	ENSMUSG00000025982	Sf3b1	99	87.270	Mus_musculus
ENSEBUG00000004325	sf3b1	100	90.191	MGP_SPRETEiJ_G0014947	Sf3b1	99	87.270	Mus_spretus
ENSEBUG00000004325	sf3b1	100	90.191	ENSMPUG00000007799	SF3B1	99	87.270	Mustela_putorius_furo
ENSEBUG00000004325	sf3b1	100	88.889	ENSMLUG00000000840	SF3B1	99	86.120	Myotis_lucifugus
ENSEBUG00000004325	sf3b1	100	90.191	ENSNGAG00000021884	-	100	87.003	Nannospalax_galili
ENSEBUG00000004325	sf3b1	100	88.601	ENSNBRG00000015816	sf3b1	99	82.635	Neolamprologus_brichardi
ENSEBUG00000004325	sf3b1	100	90.191	ENSNLEG00000006861	SF3B1	99	87.270	Nomascus_leucogenys
ENSEBUG00000004325	sf3b1	70	97.734	ENSMEUG00000015848	-	67	97.734	Notamacropus_eugenii
ENSEBUG00000004325	sf3b1	100	82.741	ENSOPRG00000008596	SF3B1	99	79.739	Ochotona_princeps
ENSEBUG00000004325	sf3b1	100	90.191	ENSODEG00000011153	-	99	87.270	Octodon_degus
ENSEBUG00000004325	sf3b1	100	88.296	ENSONIG00000013758	sf3b1	99	85.290	Oreochromis_niloticus
ENSEBUG00000004325	sf3b1	96	91.381	ENSOCUG00000012722	-	95	91.381	Oryctolagus_cuniculus
ENSEBUG00000004325	sf3b1	100	88.362	ENSORLG00000020219	sf3b1	99	86.041	Oryzias_latipes
ENSEBUG00000004325	sf3b1	100	88.362	ENSORLG00020001746	sf3b1	99	86.041	Oryzias_latipes_hni
ENSEBUG00000004325	sf3b1	62	82.275	ENSORLG00015001759	sf3b1	97	81.862	Oryzias_latipes_hsok
ENSEBUG00000004325	sf3b1	100	88.458	ENSOMEG00000019231	sf3b1	99	85.976	Oryzias_melastigma
ENSEBUG00000004325	sf3b1	100	90.191	ENSOARG00000015374	SF3B1	99	87.270	Ovis_aries
ENSEBUG00000004325	sf3b1	100	90.191	ENSPPAG00000035007	SF3B1	99	87.270	Pan_paniscus
ENSEBUG00000004325	sf3b1	100	90.191	ENSPPRG00000009090	SF3B1	99	87.270	Panthera_pardus
ENSEBUG00000004325	sf3b1	100	90.191	ENSPTIG00000021557	SF3B1	99	87.270	Panthera_tigris_altaica
ENSEBUG00000004325	sf3b1	100	85.123	ENSPTRG00000012771	SF3B1	99	83.281	Pan_troglodytes
ENSEBUG00000004325	sf3b1	100	90.191	ENSPANG00000013417	SF3B1	99	87.270	Papio_anubis
ENSEBUG00000004325	sf3b1	100	89.397	ENSPKIG00000000784	sf3b1	99	86.687	Paramormyrops_kingsleyae
ENSEBUG00000004325	sf3b1	100	91.005	ENSPSIG00000017222	SF3B1	98	88.465	Pelodiscus_sinensis
ENSEBUG00000004325	sf3b1	89	89.622	ENSPMGG00000004330	sf3b1	98	86.537	Periophthalmus_magnuspinnatus
ENSEBUG00000004325	sf3b1	100	90.191	ENSPEMG00000010699	Sf3b1	100	87.270	Peromyscus_maniculatus_bairdii
ENSEBUG00000004325	sf3b1	100	90.682	ENSPMAG00000001311	sf3b1	99	89.008	Petromyzon_marinus
ENSEBUG00000004325	sf3b1	100	90.009	ENSPCIG00000010642	SF3B1	99	87.030	Phascolarctos_cinereus
ENSEBUG00000004325	sf3b1	100	88.630	ENSPFOG00000000073	sf3b1	99	85.899	Poecilia_formosa
ENSEBUG00000004325	sf3b1	100	88.630	ENSPLAG00000002293	sf3b1	99	85.965	Poecilia_latipinna
ENSEBUG00000004325	sf3b1	100	88.630	ENSPMEG00000000446	sf3b1	97	85.965	Poecilia_mexicana
ENSEBUG00000004325	sf3b1	100	88.544	ENSPREG00000019652	sf3b1	99	85.889	Poecilia_reticulata
ENSEBUG00000004325	sf3b1	96	92.215	ENSPPYG00000013044	SF3B1	94	92.215	Pongo_abelii
ENSEBUG00000004325	sf3b1	100	90.017	ENSPCAG00000009292	SF3B1	99	87.117	Procavia_capensis
ENSEBUG00000004325	sf3b1	100	90.191	ENSPCOG00000024074	SF3B1	99	87.270	Propithecus_coquereli
ENSEBUG00000004325	sf3b1	100	90.191	ENSPVAG00000008302	SF3B1	99	87.270	Pteropus_vampyrus
ENSEBUG00000004325	sf3b1	100	88.296	ENSPNYG00000014939	sf3b1	99	85.290	Pundamilia_nyererei
ENSEBUG00000004325	sf3b1	100	88.812	ENSPNAG00000008288	sf3b1	99	85.823	Pygocentrus_nattereri
ENSEBUG00000004325	sf3b1	100	90.191	ENSRNOG00000013516	Sf3b1	99	87.270	Rattus_norvegicus
ENSEBUG00000004325	sf3b1	100	86.285	ENSRBIG00000026096	SF3B1	99	83.627	Rhinopithecus_bieti
ENSEBUG00000004325	sf3b1	100	90.191	ENSRROG00000031308	SF3B1	99	87.270	Rhinopithecus_roxellana
ENSEBUG00000004325	sf3b1	100	90.191	ENSSBOG00000020080	SF3B1	99	87.270	Saimiri_boliviensis_boliviensis
ENSEBUG00000004325	sf3b1	100	90.017	ENSSHAG00000017564	SF3B1	99	87.030	Sarcophilus_harrisii
ENSEBUG00000004325	sf3b1	100	88.554	ENSSFOG00015021535	sf3b1	99	86.509	Scleropages_formosus
ENSEBUG00000004325	sf3b1	99	88.296	ENSSMAG00000013977	sf3b1	98	85.616	Scophthalmus_maximus
ENSEBUG00000004325	sf3b1	100	88.630	ENSSDUG00000017422	sf3b1	99	85.584	Seriola_dumerili
ENSEBUG00000004325	sf3b1	100	88.544	ENSSLDG00000019495	sf3b1	99	85.507	Seriola_lalandi_dorsalis
ENSEBUG00000004325	sf3b1	81	95.599	ENSSARG00000007016	SF3B1	76	95.599	Sorex_araneus
ENSEBUG00000004325	sf3b1	100	89.826	ENSSPUG00000000410	SF3B1	99	87.385	Sphenodon_punctatus
ENSEBUG00000004325	sf3b1	100	88.898	ENSSPAG00000010451	sf3b1	98	85.976	Stegastes_partitus
ENSEBUG00000004325	sf3b1	100	90.191	ENSSSCG00000016075	SF3B1	100	89.338	Sus_scrofa
ENSEBUG00000004325	sf3b1	100	90.174	ENSTGUG00000010553	SF3B1	99	87.692	Taeniopygia_guttata
ENSEBUG00000004325	sf3b1	100	88.458	ENSTRUG00000015534	sf3b1	99	85.812	Takifugu_rubripes
ENSEBUG00000004325	sf3b1	86	92.946	ENSTBEG00000008714	SF3B1	91	92.946	Tupaia_belangeri
ENSEBUG00000004325	sf3b1	91	90.518	ENSTTRG00000003414	SF3B1	92	90.518	Tursiops_truncatus
ENSEBUG00000004325	sf3b1	94	77.743	ENSUAMG00000018506	SF3B1	97	97.297	Ursus_americanus
ENSEBUG00000004325	sf3b1	100	90.191	ENSUMAG00000020945	SF3B1	99	87.270	Ursus_maritimus
ENSEBUG00000004325	sf3b1	98	89.961	ENSVPAG00000005798	SF3B1	95	89.961	Vicugna_pacos
ENSEBUG00000004325	sf3b1	100	90.191	ENSVVUG00000025948	SF3B1	94	87.270	Vulpes_vulpes
ENSEBUG00000004325	sf3b1	100	88.715	ENSXETG00000013339	sf3b1	99	85.736	Xenopus_tropicalis
ENSEBUG00000004325	sf3b1	100	88.612	ENSXCOG00000018086	sf3b1	99	86.342	Xiphophorus_couchianus
ENSEBUG00000004325	sf3b1	100	88.276	ENSXMAG00000007369	sf3b1	99	86.244	Xiphophorus_maculatus