EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSEBUG00000004943 (Gene tree)
Gene ID
-
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Eptatretus_burgeri
Status
putative
Strand
Minus strand
Length
9500 bases
Position
chrFYBX02010478.1:978336-987835
Accession
ZDB-GENE-161207-2
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSEBUP00000007590LSMPF01423.228.3e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSEBUT00000008076-309-ENSEBUP00000007590102 (aa)--
Gene Model
Click here to download ENSEBUG00000004943's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000004943's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSEBUG00000004943lsm37732.927ENSEBUG00000002144snrpd26932.927
ENSEBUG00000004943lsm37437.333ENSEBUG00000008540lsm58237.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSEBUG00000004943lsm310089.216ENSG00000170860LSM310089.216Homo_sapiens
ENSEBUG00000004943lsm310088.235ENSAPOG00000018947lsm310088.235Acanthochromis_polyacanthus
ENSEBUG00000004943lsm310089.216ENSAMEG00000009405LSM310089.216Ailuropoda_melanoleuca
ENSEBUG00000004943lsm310088.235ENSACIG00000004574lsm37188.235Amphilophus_citrinellus
ENSEBUG00000004943lsm310088.235ENSAOCG00000007658lsm310088.235Amphiprion_ocellaris
ENSEBUG00000004943lsm310088.235ENSAPEG00000018621lsm310088.235Amphiprion_percula
ENSEBUG00000004943lsm310088.235ENSATEG00000005153lsm310088.235Anabas_testudineus
ENSEBUG00000004943lsm39392.632ENSAPLG00000014499LSM310092.632Anas_platyrhynchos
ENSEBUG00000004943lsm310088.235ENSACAG00000013503LSM310088.235Anolis_carolinensis
ENSEBUG00000004943lsm310089.216ENSANAG00000034627LSM310089.216Aotus_nancymaae
ENSEBUG00000004943lsm310087.255ENSANAG00000002903-10087.255Aotus_nancymaae
ENSEBUG00000004943lsm39392.632ENSACLG00000001726-9292.632Astatotilapia_calliptera
ENSEBUG00000004943lsm310089.216ENSAMXG00000041214lsm310089.216Astyanax_mexicanus
ENSEBUG00000004943lsm39392.632ENSBTAG00000007363LSM39992.632Bos_taurus
ENSEBUG00000004943lsm39077.174WBGene00003077lsm-39077.174Caenorhabditis_elegans
ENSEBUG00000004943lsm310087.255ENSCAFG00000001760LSM310087.255Canis_familiaris
ENSEBUG00000004943lsm310079.439ENSCAFG00020020950-10079.439Canis_lupus_dingo
ENSEBUG00000004943lsm310087.255ENSCAFG00020021584-10087.255Canis_lupus_dingo
ENSEBUG00000004943lsm310086.275ENSCAFG00020026452-10086.275Canis_lupus_dingo
ENSEBUG00000004943lsm310087.255ENSCAFG00020017266-10087.255Canis_lupus_dingo
ENSEBUG00000004943lsm310080.392ENSCAFG00020016680-10080.392Canis_lupus_dingo
ENSEBUG00000004943lsm310089.216ENSCHIG00000024650LSM310089.216Capra_hircus
ENSEBUG00000004943lsm310089.216ENSTSYG00000005204-10089.216Carlito_syrichta
ENSEBUG00000004943lsm39971.287ENSTSYG00000028528-9971.287Carlito_syrichta
ENSEBUG00000004943lsm39392.632ENSCAPG00000015760LSM39992.632Cavia_aperea
ENSEBUG00000004943lsm310089.216ENSCPOG00000034071LSM310089.216Cavia_porcellus
ENSEBUG00000004943lsm310089.216ENSCCAG00000019503-10089.216Cebus_capucinus
ENSEBUG00000004943lsm310069.608ENSCCAG00000032763-10069.608Cebus_capucinus
ENSEBUG00000004943lsm310089.216ENSCCAG00000036499-10089.216Cebus_capucinus
ENSEBUG00000004943lsm39972.277ENSCATG00000031630-9972.277Cercocebus_atys
ENSEBUG00000004943lsm310089.216ENSCATG00000039421LSM310089.216Cercocebus_atys
ENSEBUG00000004943lsm310089.216ENSCLAG00000015997LSM310089.216Chinchilla_lanigera
ENSEBUG00000004943lsm310084.314ENSCSAG00000019525-10084.314Chlorocebus_sabaeus
ENSEBUG00000004943lsm310088.235ENSCPBG00000014531LSM310088.235Chrysemys_picta_bellii
ENSEBUG00000004943lsm39880.000ENSCSAVG00000009542-9680.000Ciona_savignyi
ENSEBUG00000004943lsm310089.216ENSCANG00000033944-10089.216Colobus_angolensis_palliatus
ENSEBUG00000004943lsm310087.255ENSCANG00000038037-10087.255Colobus_angolensis_palliatus
ENSEBUG00000004943lsm310084.314ENSCANG00000018782-10084.314Colobus_angolensis_palliatus
ENSEBUG00000004943lsm310089.216ENSCGRG00001017598Lsm310089.216Cricetulus_griseus_chok1gshd
ENSEBUG00000004943lsm39876.000ENSCGRG00001011396-10076.000Cricetulus_griseus_chok1gshd
ENSEBUG00000004943lsm39173.404ENSCGRG00001008639-9573.404Cricetulus_griseus_chok1gshd
ENSEBUG00000004943lsm310089.216ENSCGRG00000016159Lsm310089.216Cricetulus_griseus_crigri
ENSEBUG00000004943lsm39377.895ENSCGRG00000012129-10077.895Cricetulus_griseus_crigri
ENSEBUG00000004943lsm310088.235ENSCSEG00000015071lsm37788.235Cynoglossus_semilaevis
ENSEBUG00000004943lsm310087.255ENSCVAG00000006933lsm310087.255Cyprinodon_variegatus
ENSEBUG00000004943lsm310090.196ENSDARG00000089663lsm310090.196Danio_rerio
ENSEBUG00000004943lsm310089.216ENSDNOG00000030808LSM310089.216Dasypus_novemcinctus
ENSEBUG00000004943lsm310072.549ENSDORG00000024490-10072.549Dipodomys_ordii
ENSEBUG00000004943lsm310089.216ENSDORG00000006894-10089.216Dipodomys_ordii
ENSEBUG00000004943lsm38783.146FBgn0051184LSm38683.146Drosophila_melanogaster
ENSEBUG00000004943lsm310089.216ENSETEG00000016207LSM310089.216Echinops_telfairi
ENSEBUG00000004943lsm310089.216ENSEASG00005015443LSM310089.216Equus_asinus_asinus
ENSEBUG00000004943lsm310089.216ENSECAG00000007803LSM310089.216Equus_caballus
ENSEBUG00000004943lsm310089.216ENSELUG00000018922lsm310089.216Esox_lucius
ENSEBUG00000004943lsm310089.216ENSFCAG00000038453LSM310089.216Felis_catus
ENSEBUG00000004943lsm310067.647ENSFCAG00000044344-10067.647Felis_catus
ENSEBUG00000004943lsm310088.235ENSFALG00000012644LSM310088.235Ficedula_albicollis
ENSEBUG00000004943lsm310089.216ENSFDAG00000011470LSM310089.216Fukomys_damarensis
ENSEBUG00000004943lsm310088.235ENSFHEG00000000876lsm310088.235Fundulus_heteroclitus
ENSEBUG00000004943lsm39391.579ENSGMOG00000011024lsm310091.579Gadus_morhua
ENSEBUG00000004943lsm310088.235ENSGAFG00000013965lsm310088.235Gambusia_affinis
ENSEBUG00000004943lsm310088.235ENSGACG00000003488lsm310088.235Gasterosteus_aculeatus
ENSEBUG00000004943lsm310088.235ENSGAGG00000025707LSM310088.235Gopherus_agassizii
ENSEBUG00000004943lsm310089.216ENSGGOG00000010006LSM310089.216Gorilla_gorilla
ENSEBUG00000004943lsm310088.235ENSHBUG00000022399lsm310088.235Haplochromis_burtoni
ENSEBUG00000004943lsm310089.216ENSHGLG00000000651LSM310089.216Heterocephalus_glaber_female
ENSEBUG00000004943lsm310070.588ENSHGLG00000015564-10070.588Heterocephalus_glaber_female
ENSEBUG00000004943lsm310089.216ENSHGLG00100011343LSM310089.216Heterocephalus_glaber_male
ENSEBUG00000004943lsm310070.588ENSHGLG00100010658-10070.588Heterocephalus_glaber_male
ENSEBUG00000004943lsm310089.216ENSHCOG00000013481lsm310089.216Hippocampus_comes
ENSEBUG00000004943lsm310090.196ENSIPUG00000009207lsm310090.196Ictalurus_punctatus
ENSEBUG00000004943lsm310089.216ENSSTOG00000006842LSM310089.216Ictidomys_tridecemlineatus
ENSEBUG00000004943lsm310082.353ENSJJAG00000012797-10082.353Jaculus_jaculus
ENSEBUG00000004943lsm39970.588ENSJJAG00000018311-10070.588Jaculus_jaculus
ENSEBUG00000004943lsm310089.216ENSJJAG00000017351Lsm310089.216Jaculus_jaculus
ENSEBUG00000004943lsm310088.235ENSKMAG00000015182lsm310088.235Kryptolebias_marmoratus
ENSEBUG00000004943lsm39392.632ENSLBEG00000021292lsm39792.632Labrus_bergylta
ENSEBUG00000004943lsm310089.216ENSLOCG00000013560lsm310089.216Lepisosteus_oculatus
ENSEBUG00000004943lsm310088.350ENSLAFG00000023308LSM310088.350Loxodonta_africana
ENSEBUG00000004943lsm310089.216ENSMFAG00000003185LSM310089.216Macaca_fascicularis
ENSEBUG00000004943lsm39574.227ENSMMUG00000002294-9474.227Macaca_mulatta
ENSEBUG00000004943lsm310069.608ENSMMUG00000043596-10069.608Macaca_mulatta
ENSEBUG00000004943lsm310089.216ENSMMUG00000023126LSM310089.216Macaca_mulatta
ENSEBUG00000004943lsm39973.267ENSMNEG00000037686-9973.267Macaca_nemestrina
ENSEBUG00000004943lsm310089.216ENSMNEG00000043632LSM310089.216Macaca_nemestrina
ENSEBUG00000004943lsm310089.216ENSMLEG00000036162LSM310089.216Mandrillus_leucophaeus
ENSEBUG00000004943lsm310088.235ENSMAMG00000012807lsm310088.235Mastacembelus_armatus
ENSEBUG00000004943lsm310088.235ENSMZEG00005016682lsm37388.235Maylandia_zebra
ENSEBUG00000004943lsm39392.632ENSMGAG00000007776LSM39992.632Meleagris_gallopavo
ENSEBUG00000004943lsm310089.216ENSMICG00000032361-10089.216Microcebus_murinus
ENSEBUG00000004943lsm310075.490ENSMICG00000027821-10075.490Microcebus_murinus
ENSEBUG00000004943lsm310089.216ENSMOCG00000014269Lsm310089.216Microtus_ochrogaster
ENSEBUG00000004943lsm310088.235ENSMMOG00000020715lsm310088.235Mola_mola
ENSEBUG00000004943lsm310089.216ENSMODG00000007275LSM310089.216Monodelphis_domestica
ENSEBUG00000004943lsm310088.235ENSMALG00000006485lsm310088.235Monopterus_albus
ENSEBUG00000004943lsm310089.216ENSMUSG00000034192Lsm310089.216Mus_musculus
ENSEBUG00000004943lsm310089.216MGP_PahariEiJ_G0022402Lsm310089.216Mus_pahari
ENSEBUG00000004943lsm310089.216MGP_SPRETEiJ_G0029681Lsm310089.216Mus_spretus
ENSEBUG00000004943lsm38382.353ENSMPUG00000017256-10082.353Mustela_putorius_furo
ENSEBUG00000004943lsm39779.798ENSMPUG00000019120-9779.798Mustela_putorius_furo
ENSEBUG00000004943lsm310089.216ENSMLUG00000010677LSM310089.216Myotis_lucifugus
ENSEBUG00000004943lsm310084.314ENSMLUG00000024700-10084.314Myotis_lucifugus
ENSEBUG00000004943lsm39974.257ENSNGAG00000010207-9974.257Nannospalax_galili
ENSEBUG00000004943lsm310066.667ENSNGAG00000013716-10066.667Nannospalax_galili
ENSEBUG00000004943lsm310089.216ENSNGAG00000022450Lsm310089.216Nannospalax_galili
ENSEBUG00000004943lsm310088.235ENSNBRG00000014318lsm310088.235Neolamprologus_brichardi
ENSEBUG00000004943lsm310089.216ENSNLEG00000005079LSM310089.216Nomascus_leucogenys
ENSEBUG00000004943lsm310080.392ENSNLEG00000030229-10080.392Nomascus_leucogenys
ENSEBUG00000004943lsm310088.235ENSODEG00000019740-10088.235Octodon_degus
ENSEBUG00000004943lsm310089.216ENSODEG00000001726LSM310089.216Octodon_degus
ENSEBUG00000004943lsm310087.255ENSODEG00000019158-10087.255Octodon_degus
ENSEBUG00000004943lsm310082.353ENSODEG00000019403-10082.353Octodon_degus
ENSEBUG00000004943lsm310088.235ENSONIG00000021369-10088.235Oreochromis_niloticus
ENSEBUG00000004943lsm310088.235ENSONIG00000000370lsm310088.235Oreochromis_niloticus
ENSEBUG00000004943lsm310089.216ENSOANG00000012273LSM310089.216Ornithorhynchus_anatinus
ENSEBUG00000004943lsm310089.216ENSOCUG00000027653-10089.216Oryctolagus_cuniculus
ENSEBUG00000004943lsm310087.255ENSOCUG00000011088-10087.255Oryctolagus_cuniculus
ENSEBUG00000004943lsm310089.216ENSORLG00000025900lsm310089.216Oryzias_latipes
ENSEBUG00000004943lsm310089.216ENSORLG00020007125lsm310089.216Oryzias_latipes_hni
ENSEBUG00000004943lsm310089.216ENSORLG00015002944lsm310089.216Oryzias_latipes_hsok
ENSEBUG00000004943lsm310089.216ENSOMEG00000001915lsm310089.216Oryzias_melastigma
ENSEBUG00000004943lsm39391.579ENSOGAG00000028858-9791.579Otolemur_garnettii
ENSEBUG00000004943lsm310089.216ENSOGAG00000007659-10089.216Otolemur_garnettii
ENSEBUG00000004943lsm310079.412ENSOGAG00000033051-10079.412Otolemur_garnettii
ENSEBUG00000004943lsm310088.350ENSOARG00000000600LSM310088.350Ovis_aries
ENSEBUG00000004943lsm310089.216ENSPPAG00000034074LSM310089.216Pan_paniscus
ENSEBUG00000004943lsm39982.178ENSPPRG00000010610-8982.178Panthera_pardus
ENSEBUG00000004943lsm310088.235ENSPPRG00000020953-10088.235Panthera_pardus
ENSEBUG00000004943lsm310089.216ENSPPRG00000012912-10089.216Panthera_pardus
ENSEBUG00000004943lsm310089.216ENSPTIG00000003463-10089.216Panthera_tigris_altaica
ENSEBUG00000004943lsm310089.216ENSPTIG00000013072-10089.216Panthera_tigris_altaica
ENSEBUG00000004943lsm310089.216ENSPTRG00000014650LSM310089.216Pan_troglodytes
ENSEBUG00000004943lsm310089.216ENSPANG00000009378LSM310089.216Papio_anubis
ENSEBUG00000004943lsm310069.608ENSPANG00000032192-10069.608Papio_anubis
ENSEBUG00000004943lsm310088.235ENSPKIG00000008037lsm39188.235Paramormyrops_kingsleyae
ENSEBUG00000004943lsm310088.235ENSPSIG00000015720LSM310088.235Pelodiscus_sinensis
ENSEBUG00000004943lsm39391.579ENSPMGG00000012103lsm39691.579Periophthalmus_magnuspinnatus
ENSEBUG00000004943lsm310089.216ENSPEMG00000015797Lsm310089.216Peromyscus_maniculatus_bairdii
ENSEBUG00000004943lsm310072.549ENSPEMG00000020213-10072.549Peromyscus_maniculatus_bairdii
ENSEBUG00000004943lsm310088.235ENSPFOG00000008372lsm310088.235Poecilia_formosa
ENSEBUG00000004943lsm310088.235ENSPLAG00000000563lsm310088.235Poecilia_latipinna
ENSEBUG00000004943lsm310088.235ENSPMEG00000022052lsm310088.235Poecilia_mexicana
ENSEBUG00000004943lsm310088.235ENSPREG00000022485lsm310088.235Poecilia_reticulata
ENSEBUG00000004943lsm310089.216ENSPPYG00000013402LSM310089.216Pongo_abelii
ENSEBUG00000004943lsm310089.216ENSPCAG00000017077LSM310089.216Procavia_capensis
ENSEBUG00000004943lsm39469.792ENSPCOG00000014435-9869.792Propithecus_coquereli
ENSEBUG00000004943lsm310089.216ENSPCOG00000016217-10089.216Propithecus_coquereli
ENSEBUG00000004943lsm310089.216ENSPVAG00000016795LSM310089.216Pteropus_vampyrus
ENSEBUG00000004943lsm310088.235ENSPNYG00000009552lsm37388.235Pundamilia_nyererei
ENSEBUG00000004943lsm310089.216ENSPNAG00000023467lsm310089.216Pygocentrus_nattereri
ENSEBUG00000004943lsm310089.216ENSRNOG00000008733Lsm310089.216Rattus_norvegicus
ENSEBUG00000004943lsm310089.216ENSRBIG00000034399LSM310089.216Rhinopithecus_bieti
ENSEBUG00000004943lsm310073.529ENSRBIG00000043783-10073.529Rhinopithecus_bieti
ENSEBUG00000004943lsm310074.510ENSRROG00000039868-10074.510Rhinopithecus_roxellana
ENSEBUG00000004943lsm310078.431ENSRROG00000044047-10078.431Rhinopithecus_roxellana
ENSEBUG00000004943lsm310089.216ENSRROG00000033276-10089.216Rhinopithecus_roxellana
ENSEBUG00000004943lsm310072.549ENSRROG00000044056-10072.549Rhinopithecus_roxellana
ENSEBUG00000004943lsm310089.216ENSSBOG00000024310LSM310089.216Saimiri_boliviensis_boliviensis
ENSEBUG00000004943lsm310089.216ENSSFOG00015007071lsm310089.216Scleropages_formosus
ENSEBUG00000004943lsm310088.235ENSSMAG00000001818lsm310088.235Scophthalmus_maximus
ENSEBUG00000004943lsm310088.235ENSSDUG00000006040lsm310088.235Seriola_dumerili
ENSEBUG00000004943lsm310088.235ENSSLDG00000006399lsm310088.235Seriola_lalandi_dorsalis
ENSEBUG00000004943lsm35794.828ENSSARG00000005275-10094.828Sorex_araneus
ENSEBUG00000004943lsm39392.632ENSSPUG00000017047-9992.632Sphenodon_punctatus
ENSEBUG00000004943lsm310079.412ENSSPUG00000005394LSM310079.412Sphenodon_punctatus
ENSEBUG00000004943lsm310076.471ENSSPAG00000000934lsm310076.471Stegastes_partitus
ENSEBUG00000004943lsm310089.216ENSSSCG00000011601LSM310089.216Sus_scrofa
ENSEBUG00000004943lsm39567.010ENSSSCG00000023718-9967.010Sus_scrofa
ENSEBUG00000004943lsm310088.235ENSTGUG00000008327LSM310088.235Taeniopygia_guttata
ENSEBUG00000004943lsm310088.235ENSTRUG00000023175lsm310088.235Takifugu_rubripes
ENSEBUG00000004943lsm310088.235ENSTNIG00000005589lsm310088.235Tetraodon_nigroviridis
ENSEBUG00000004943lsm310080.392ENSTBEG00000001050-9980.392Tupaia_belangeri
ENSEBUG00000004943lsm310089.216ENSTTRG00000011197LSM310089.216Tursiops_truncatus
ENSEBUG00000004943lsm310089.216ENSUAMG00000017250-10089.216Ursus_americanus
ENSEBUG00000004943lsm310089.216ENSUMAG00000015905LSM310089.216Ursus_maritimus
ENSEBUG00000004943lsm39392.632ENSVPAG00000010709LSM310092.632Vicugna_pacos
ENSEBUG00000004943lsm310084.314ENSVVUG00000005684-10084.314Vulpes_vulpes
ENSEBUG00000004943lsm310086.275ENSVVUG00000007332-9186.275Vulpes_vulpes
ENSEBUG00000004943lsm310081.373ENSVVUG00000024228-10081.373Vulpes_vulpes
ENSEBUG00000004943lsm310085.294ENSVVUG00000029294-10085.294Vulpes_vulpes
ENSEBUG00000004943lsm310084.314ENSVVUG00000006481-10084.314Vulpes_vulpes
ENSEBUG00000004943lsm310089.216ENSXETG00000011534lsm310089.216Xenopus_tropicalis
ENSEBUG00000004943lsm310088.235ENSXCOG00000017432LSM310088.235Xiphophorus_couchianus
ENSEBUG00000004943lsm310088.235ENSXMAG00000009151lsm310088.235Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us