EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000005059 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 303403 bases
Position: chrFYBX02009615.1:2719858-3023260
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000007766	EST1	PF10374.9	8.5e-15	1	1
ENSEBUP00000007812	EST1	PF10374.9	8.7e-15	1	1
ENSEBUP00000007812	EST1_DNA_bind	PF10373.9	3.3e-52	1	1
ENSEBUP00000007766	EST1_DNA_bind	PF10373.9	1.1e-48	1	1
ENSEBUP00000007812	PIN_4	PF13638.6	1.2e-21	1	1
ENSEBUP00000007766	PIN_4	PF13638.6	1.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000008252	-	6695	-	ENSEBUP00000007766	1572 (aa)	-	-
ENSEBUT00000008300	-	6542	-	ENSEBUP00000007812	1521 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000005059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000005059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000005059	smg6	66	49.806	ENSG00000070366	SMG6	99	55.307	Homo_sapiens
ENSEBUG00000005059	smg6	63	46.798	ENSAPOG00000019448	smg6	60	47.600	Acanthochromis_polyacanthus
ENSEBUG00000005059	smg6	71	49.662	ENSAMEG00000007632	SMG6	74	50.000	Ailuropoda_melanoleuca
ENSEBUG00000005059	smg6	63	47.530	ENSACIG00000012997	smg6	65	47.530	Amphilophus_citrinellus
ENSEBUG00000005059	smg6	63	46.798	ENSAOCG00000002630	smg6	60	47.498	Amphiprion_ocellaris
ENSEBUG00000005059	smg6	63	46.798	ENSAPEG00000019101	smg6	60	47.498	Amphiprion_percula
ENSEBUG00000005059	smg6	61	47.410	ENSATEG00000006483	smg6	58	47.410	Anabas_testudineus
ENSEBUG00000005059	smg6	54	44.613	ENSACAG00000011783	SMG6	65	45.581	Anolis_carolinensis
ENSEBUG00000005059	smg6	73	48.790	ENSANAG00000035760	SMG6	73	49.903	Aotus_nancymaae
ENSEBUG00000005059	smg6	64	44.695	ENSACLG00000005288	smg6	64	47.451	Astatotilapia_calliptera
ENSEBUG00000005059	smg6	65	48.594	ENSAMXG00000017326	smg6	66	50.463	Astyanax_mexicanus
ENSEBUG00000005059	smg6	73	48.828	ENSBTAG00000000267	SMG6	74	49.951	Bos_taurus
ENSEBUG00000005059	smg6	73	48.976	ENSCJAG00000001820	SMG6	73	49.806	Callithrix_jacchus
ENSEBUG00000005059	smg6	71	50.048	ENSCAFG00000019260	SMG6	69	52.737	Canis_familiaris
ENSEBUG00000005059	smg6	71	50.048	ENSCAFG00020009770	SMG6	69	52.737	Canis_lupus_dingo
ENSEBUG00000005059	smg6	73	49.020	ENSCHIG00000021998	SMG6	74	50.345	Capra_hircus
ENSEBUG00000005059	smg6	73	48.801	ENSTSYG00000003406	SMG6	99	55.493	Carlito_syrichta
ENSEBUG00000005059	smg6	58	53.589	ENSCAPG00000016197	SMG6	62	53.589	Cavia_aperea
ENSEBUG00000005059	smg6	71	49.758	ENSCPOG00000014878	SMG6	91	49.541	Cavia_porcellus
ENSEBUG00000005059	smg6	73	48.883	ENSCCAG00000035801	SMG6	73	50.389	Cebus_capucinus
ENSEBUG00000005059	smg6	66	49.855	ENSCATG00000031956	SMG6	73	47.461	Cercocebus_atys
ENSEBUG00000005059	smg6	71	49.903	ENSCLAG00000006748	SMG6	82	53.030	Chinchilla_lanigera
ENSEBUG00000005059	smg6	71	49.855	ENSCSAG00000013800	SMG6	73	49.903	Chlorocebus_sabaeus
ENSEBUG00000005059	smg6	64	51.461	ENSCPBG00000020369	SMG6	69	51.461	Chrysemys_picta_bellii
ENSEBUG00000005059	smg6	66	49.565	ENSCANG00000031764	SMG6	99	55.493	Colobus_angolensis_palliatus
ENSEBUG00000005059	smg6	65	50.000	ENSCGRG00000007782	Smg6	68	45.862	Cricetulus_griseus_crigri
ENSEBUG00000005059	smg6	63	47.633	ENSCSEG00000012757	smg6	62	47.628	Cynoglossus_semilaevis
ENSEBUG00000005059	smg6	63	47.198	ENSCVAG00000012789	smg6	60	47.703	Cyprinodon_variegatus
ENSEBUG00000005059	smg6	63	48.071	ENSDARG00000100481	smg6	62	48.761	Danio_rerio
ENSEBUG00000005059	smg6	73	49.662	ENSDNOG00000048283	SMG6	75	50.243	Dasypus_novemcinctus
ENSEBUG00000005059	smg6	72	55.275	ENSDORG00000016614	Smg6	82	53.030	Dipodomys_ordii
ENSEBUG00000005059	smg6	64	80.000	ENSETEG00000016790	SMG6	67	78.049	Echinops_telfairi
ENSEBUG00000005059	smg6	73	48.930	ENSEASG00005009318	SMG6	73	50.584	Equus_asinus_asinus
ENSEBUG00000005059	smg6	73	48.837	ENSECAG00000006519	SMG6	73	50.486	Equus_caballus
ENSEBUG00000005059	smg6	64	55.981	ENSEEUG00000003493	SMG6	64	55.904	Erinaceus_europaeus
ENSEBUG00000005059	smg6	59	49.476	ENSELUG00000005934	smg6	55	47.168	Esox_lucius
ENSEBUG00000005059	smg6	71	49.806	ENSFCAG00000028817	SMG6	74	50.292	Felis_catus
ENSEBUG00000005059	smg6	68	48.887	ENSFALG00000006538	SMG6	66	51.411	Ficedula_albicollis
ENSEBUG00000005059	smg6	68	48.369	ENSFDAG00000015106	SMG6	82	52.525	Fukomys_damarensis
ENSEBUG00000005059	smg6	63	46.758	ENSFHEG00000013282	smg6	60	46.725	Fundulus_heteroclitus
ENSEBUG00000005059	smg6	68	49.398	ENSGALG00000003108	SMG6	66	50.292	Gallus_gallus
ENSEBUG00000005059	smg6	61	48.540	ENSGAFG00000000379	smg6	59	48.540	Gambusia_affinis
ENSEBUG00000005059	smg6	63	47.379	ENSGACG00000020521	smg6	75	47.581	Gasterosteus_aculeatus
ENSEBUG00000005059	smg6	60	50.941	ENSGAGG00000025617	SMG6	66	50.941	Gopherus_agassizii
ENSEBUG00000005059	smg6	66	49.758	ENSGGOG00000017156	SMG6	68	49.806	Gorilla_gorilla
ENSEBUG00000005059	smg6	63	47.041	ENSHBUG00000021311	smg6	59	47.647	Haplochromis_burtoni
ENSEBUG00000005059	smg6	73	48.835	ENSHGLG00000012882	SMG6	82	53.030	Heterocephalus_glaber_female
ENSEBUG00000005059	smg6	73	48.833	ENSHGLG00100017815	SMG6	82	53.030	Heterocephalus_glaber_male
ENSEBUG00000005059	smg6	63	47.643	ENSHCOG00000008761	smg6	77	48.640	Hippocampus_comes
ENSEBUG00000005059	smg6	60	49.685	ENSIPUG00000012493	smg6	56	49.633	Ictalurus_punctatus
ENSEBUG00000005059	smg6	73	48.699	ENSSTOG00000028127	SMG6	92	49.776	Ictidomys_tridecemlineatus
ENSEBUG00000005059	smg6	63	47.203	ENSKMAG00000000279	smg6	60	47.203	Kryptolebias_marmoratus
ENSEBUG00000005059	smg6	61	47.548	ENSLBEG00000002184	smg6	58	47.748	Labrus_bergylta
ENSEBUG00000005059	smg6	63	50.200	ENSLOCG00000006448	smg6	69	50.249	Lepisosteus_oculatus
ENSEBUG00000005059	smg6	74	48.179	ENSLAFG00000001261	SMG6	73	50.243	Loxodonta_africana
ENSEBUG00000005059	smg6	66	49.855	ENSMFAG00000003394	SMG6	73	47.553	Macaca_fascicularis
ENSEBUG00000005059	smg6	66	50.000	ENSMMUG00000023161	SMG6	73	50.536	Macaca_mulatta
ENSEBUG00000005059	smg6	66	47.868	ENSMNEG00000044592	SMG6	73	47.961	Macaca_nemestrina
ENSEBUG00000005059	smg6	63	55.536	ENSMLEG00000029353	SMG6	68	55.888	Mandrillus_leucophaeus
ENSEBUG00000005059	smg6	61	48.044	ENSMAMG00000020119	smg6	62	48.403	Mastacembelus_armatus
ENSEBUG00000005059	smg6	64	44.883	ENSMZEG00005024736	smg6	59	47.647	Maylandia_zebra
ENSEBUG00000005059	smg6	73	48.696	ENSMICG00000012913	SMG6	73	50.389	Microcebus_murinus
ENSEBUG00000005059	smg6	63	46.407	ENSMMOG00000010883	smg6	62	46.766	Mola_mola
ENSEBUG00000005059	smg6	74	49.860	ENSMODG00000010622	SMG6	79	49.488	Monodelphis_domestica
ENSEBUG00000005059	smg6	63	47.082	ENSMALG00000001106	smg6	59	47.425	Monopterus_albus
ENSEBUG00000005059	smg6	71	49.419	MGP_CAROLIEiJ_G0016729	Smg6	98	49.570	Mus_caroli
ENSEBUG00000005059	smg6	71	49.904	ENSMUSG00000038290	Smg6	97	50.430	Mus_musculus
ENSEBUG00000005059	smg6	71	49.616	MGP_PahariEiJ_G0017866	Smg6	98	49.857	Mus_pahari
ENSEBUG00000005059	smg6	71	50.192	MGP_SPRETEiJ_G0017572	Smg6	98	50.430	Mus_spretus
ENSEBUG00000005059	smg6	71	49.856	ENSMPUG00000013046	SMG6	74	50.292	Mustela_putorius_furo
ENSEBUG00000005059	smg6	73	48.555	ENSMLUG00000005739	SMG6	74	50.097	Myotis_lucifugus
ENSEBUG00000005059	smg6	66	49.661	ENSNGAG00000007287	Smg6	82	52.525	Nannospalax_galili
ENSEBUG00000005059	smg6	63	46.890	ENSNBRG00000009511	smg6	64	47.260	Neolamprologus_brichardi
ENSEBUG00000005059	smg6	66	49.758	ENSNLEG00000017171	SMG6	99	55.307	Nomascus_leucogenys
ENSEBUG00000005059	smg6	68	48.887	ENSMEUG00000015804	SMG6	70	49.806	Notamacropus_eugenii
ENSEBUG00000005059	smg6	69	54.978	ENSODEG00000008038	SMG6	80	49.383	Octodon_degus
ENSEBUG00000005059	smg6	65	45.857	ENSONIG00000005594	smg6	70	46.660	Oreochromis_niloticus
ENSEBUG00000005059	smg6	68	49.021	ENSOCUG00000013018	SMG6	68	50.684	Oryctolagus_cuniculus
ENSEBUG00000005059	smg6	63	46.634	ENSORLG00000003317	smg6	60	47.030	Oryzias_latipes
ENSEBUG00000005059	smg6	63	46.304	ENSORLG00020015343	smg6	60	47.036	Oryzias_latipes_hni
ENSEBUG00000005059	smg6	64	43.733	ENSORLG00015020454	smg6	60	44.598	Oryzias_latipes_hsok
ENSEBUG00000005059	smg6	63	46.550	ENSOMEG00000010838	smg6	60	46.784	Oryzias_melastigma
ENSEBUG00000005059	smg6	66	49.806	ENSOGAG00000004483	SMG6	68	50.243	Otolemur_garnettii
ENSEBUG00000005059	smg6	68	49.020	ENSOARG00000015076	SMG6	70	50.345	Ovis_aries
ENSEBUG00000005059	smg6	66	49.709	ENSPPAG00000043296	SMG6	68	49.806	Pan_paniscus
ENSEBUG00000005059	smg6	71	49.758	ENSPPRG00000014581	SMG6	74	50.292	Panthera_pardus
ENSEBUG00000005059	smg6	66	49.758	ENSPTIG00000008925	SMG6	99	55.121	Panthera_tigris_altaica
ENSEBUG00000005059	smg6	66	49.612	ENSPTRG00000008544	SMG6	99	55.307	Pan_troglodytes
ENSEBUG00000005059	smg6	66	49.758	ENSPANG00000024588	SMG6	73	47.461	Papio_anubis
ENSEBUG00000005059	smg6	52	47.533	ENSPSIG00000006660	SMG6	60	47.774	Pelodiscus_sinensis
ENSEBUG00000005059	smg6	71	45.122	ENSPMGG00000000844	smg6	68	54.545	Periophthalmus_magnuspinnatus
ENSEBUG00000005059	smg6	73	48.555	ENSPEMG00000020707	Smg6	83	52.764	Peromyscus_maniculatus_bairdii
ENSEBUG00000005059	smg6	61	48.361	ENSPFOG00000012035	smg6	67	48.220	Poecilia_formosa
ENSEBUG00000005059	smg6	61	47.485	ENSPLAG00000017660	smg6	59	47.700	Poecilia_latipinna
ENSEBUG00000005059	smg6	61	47.944	ENSPMEG00000000258	smg6	59	47.809	Poecilia_mexicana
ENSEBUG00000005059	smg6	63	47.805	ENSPREG00000010066	smg6	60	47.578	Poecilia_reticulata
ENSEBUG00000005059	smg6	71	45.111	ENSPPYG00000007790	SMG6	74	45.130	Pongo_abelii
ENSEBUG00000005059	smg6	69	57.346	ENSPCAG00000000552	SMG6	68	58.273	Procavia_capensis
ENSEBUG00000005059	smg6	73	48.369	ENSPCOG00000020925	SMG6	73	50.146	Propithecus_coquereli
ENSEBUG00000005059	smg6	51	53.650	ENSPVAG00000002159	SMG6	52	57.833	Pteropus_vampyrus
ENSEBUG00000005059	smg6	64	46.147	ENSPNYG00000024151	smg6	64	48.600	Pundamilia_nyererei
ENSEBUG00000005059	smg6	61	45.371	ENSPNAG00000015480	smg6	57	52.316	Pygocentrus_nattereri
ENSEBUG00000005059	smg6	71	49.709	ENSRNOG00000003041	Smg6	97	50.430	Rattus_norvegicus
ENSEBUG00000005059	smg6	66	49.854	ENSRBIG00000024746	SMG6	73	49.952	Rhinopithecus_bieti
ENSEBUG00000005059	smg6	66	49.854	ENSRROG00000030423	SMG6	99	55.493	Rhinopithecus_roxellana
ENSEBUG00000005059	smg6	68	48.835	ENSSBOG00000022518	SMG6	68	47.957	Saimiri_boliviensis_boliviensis
ENSEBUG00000005059	smg6	68	49.351	ENSSHAG00000010045	SMG6	69	50.938	Sarcophilus_harrisii
ENSEBUG00000005059	smg6	63	49.217	ENSSFOG00015005436	smg6	58	48.256	Scleropages_formosus
ENSEBUG00000005059	smg6	61	47.600	ENSSMAG00000019777	smg6	58	47.557	Scophthalmus_maximus
ENSEBUG00000005059	smg6	63	47.070	ENSSDUG00000016412	smg6	59	47.162	Seriola_dumerili
ENSEBUG00000005059	smg6	60	45.566	ENSSLDG00000020747	smg6	61	45.575	Seriola_lalandi_dorsalis
ENSEBUG00000005059	smg6	68	48.934	ENSSPUG00000007152	SMG6	65	52.038	Sphenodon_punctatus
ENSEBUG00000005059	smg6	63	47.343	ENSSPAG00000015633	smg6	59	47.507	Stegastes_partitus
ENSEBUG00000005059	smg6	73	48.928	ENSSSCG00000017826	SMG6	74	50.486	Sus_scrofa
ENSEBUG00000005059	smg6	72	47.315	ENSTGUG00000005836	SMG6	65	51.883	Taeniopygia_guttata
ENSEBUG00000005059	smg6	61	47.857	ENSTRUG00000000358	smg6	63	47.857	Takifugu_rubripes
ENSEBUG00000005059	smg6	61	47.822	ENSTNIG00000016164	smg6	65	48.223	Tetraodon_nigroviridis
ENSEBUG00000005059	smg6	71	47.793	ENSTBEG00000011424	SMG6	73	52.280	Tupaia_belangeri
ENSEBUG00000005059	smg6	51	48.248	ENSTTRG00000001175	SMG6	52	52.256	Tursiops_truncatus
ENSEBUG00000005059	smg6	71	50.194	ENSUAMG00000025152	SMG6	74	50.146	Ursus_americanus
ENSEBUG00000005059	smg6	66	49.952	ENSUMAG00000009306	SMG6	70	50.195	Ursus_maritimus
ENSEBUG00000005059	smg6	52	88.889	ENSVPAG00000000225	SMG6	56	88.889	Vicugna_pacos
ENSEBUG00000005059	smg6	71	50.048	ENSVVUG00000021727	SMG6	69	52.681	Vulpes_vulpes
ENSEBUG00000005059	smg6	62	48.004	ENSXETG00000023799	SMG6	67	48.004	Xenopus_tropicalis
ENSEBUG00000005059	smg6	63	47.739	ENSXCOG00000009867	smg6	60	47.739	Xiphophorus_couchianus
ENSEBUG00000005059	smg6	60	49.011	ENSXMAG00000010321	smg6	57	49.224	Xiphophorus_maculatus