EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000005667 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 107597 bases
Position: chrFYBX02010226.1:826116-933712
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000008777	RNA_pol_Rpb1_5	PF04998.17	2.7e-92	1	1
ENSEBUP00000008819	RNA_pol_Rpb1_5	PF04998.17	8.6e-84	1	1
ENSEBUP00000008777	RNA_pol_Rpb1_4	PF05000.17	1.1e-19	1	1
ENSEBUP00000008819	RNA_pol_Rpb1_4	PF05000.17	1.4e-19	1	1
ENSEBUP00000008777	RNA_pol_Rpb1_2	PF00623.20	3.2e-60	1	1
ENSEBUP00000008819	RNA_pol_Rpb1_2	PF00623.20	3.3e-60	1	1
ENSEBUP00000008819	RNA_pol_Rpb1_3	PF04983.18	1.6e-29	1	1
ENSEBUP00000008777	RNA_pol_Rpb1_3	PF04983.18	1.7e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000009289	-	5848	-	ENSEBUP00000008777	1454 (aa)	-	-
ENSEBUT00000009331	-	5650	-	ENSEBUP00000008819	1388 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000005667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000005667's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000005667	-	99	65.891	ENSG00000068654	POLR1A	89	47.671	Homo_sapiens
ENSEBUG00000005667	-	68	48.144	ENSAPOG00000017945	polr1a	83	52.234	Acanthochromis_polyacanthus
ENSEBUG00000005667	-	99	47.776	ENSAMEG00000005807	POLR1A	81	67.442	Ailuropoda_melanoleuca
ENSEBUG00000005667	-	99	46.103	ENSACIG00000022147	polr1a	89	46.438	Amphilophus_citrinellus
ENSEBUG00000005667	-	99	47.666	ENSAOCG00000017336	polr1a	88	48.504	Amphiprion_ocellaris
ENSEBUG00000005667	-	99	47.732	ENSAPEG00000016105	polr1a	89	47.386	Amphiprion_percula
ENSEBUG00000005667	-	99	47.852	ENSATEG00000016773	polr1a	89	47.070	Anabas_testudineus
ENSEBUG00000005667	-	95	48.161	ENSAPLG00000013871	POLR1A	99	47.954	Anas_platyrhynchos
ENSEBUG00000005667	-	99	46.357	ENSACAG00000012141	POLR1A	86	51.740	Anolis_carolinensis
ENSEBUG00000005667	-	99	47.610	ENSANAG00000033927	POLR1A	86	65.116	Aotus_nancymaae
ENSEBUG00000005667	-	99	46.765	ENSACLG00000020541	polr1a	90	46.747	Astatotilapia_calliptera
ENSEBUG00000005667	-	99	66.667	ENSBTAG00000006481	POLR1A	81	66.667	Bos_taurus
ENSEBUG00000005667	-	95	38.440	WBGene00012999	rpoa-1	77	55.435	Caenorhabditis_elegans
ENSEBUG00000005667	-	99	48.483	ENSCJAG00000019547	POLR1A	89	48.060	Callithrix_jacchus
ENSEBUG00000005667	-	93	67.442	ENSCAFG00000007613	POLR1A	88	67.442	Canis_familiaris
ENSEBUG00000005667	-	93	67.442	ENSCAFG00020014752	POLR1A	88	67.442	Canis_lupus_dingo
ENSEBUG00000005667	-	99	47.576	ENSCHIG00000018204	POLR1A	82	67.442	Capra_hircus
ENSEBUG00000005667	-	99	66.929	ENSTSYG00000002761	POLR1A	88	66.929	Carlito_syrichta
ENSEBUG00000005667	-	99	46.084	ENSCAPG00000010132	POLR1A	92	46.457	Cavia_aperea
ENSEBUG00000005667	-	99	48.249	ENSCPOG00000012350	POLR1A	89	48.280	Cavia_porcellus
ENSEBUG00000005667	-	99	48.162	ENSCCAG00000019839	POLR1A	86	65.891	Cebus_capucinus
ENSEBUG00000005667	-	99	66.667	ENSCATG00000029786	POLR1A	88	66.667	Cercocebus_atys
ENSEBUG00000005667	-	99	47.674	ENSCLAG00000005187	POLR1A	88	66.667	Chinchilla_lanigera
ENSEBUG00000005667	-	99	66.667	ENSCSAG00000016251	POLR1A	88	66.667	Chlorocebus_sabaeus
ENSEBUG00000005667	-	99	47.161	ENSCPBG00000001115	POLR1A	82	65.385	Chrysemys_picta_bellii
ENSEBUG00000005667	-	96	51.587	ENSCSAVG00000007184	-	79	52.893	Ciona_savignyi
ENSEBUG00000005667	-	99	67.442	ENSCANG00000031785	POLR1A	88	67.442	Colobus_angolensis_palliatus
ENSEBUG00000005667	-	93	67.442	ENSCGRG00001006651	Polr1a	85	67.442	Cricetulus_griseus_chok1gshd
ENSEBUG00000005667	-	58	67.442	ENSCGRG00000010834	Polr1a	99	47.619	Cricetulus_griseus_crigri
ENSEBUG00000005667	-	99	45.556	ENSCSEG00000020190	polr1a	89	44.619	Cynoglossus_semilaevis
ENSEBUG00000005667	-	99	47.971	ENSCVAG00000020941	polr1a	89	48.396	Cyprinodon_variegatus
ENSEBUG00000005667	-	99	48.435	ENSDARG00000098375	polr1a	89	47.880	Danio_rerio
ENSEBUG00000005667	-	99	55.303	ENSDNOG00000010829	POLR1A	89	47.409	Dasypus_novemcinctus
ENSEBUG00000005667	-	99	47.267	ENSDORG00000008298	Polr1a	89	46.911	Dipodomys_ordii
ENSEBUG00000005667	-	83	55.285	FBgn0019938	RpI1	72	55.285	Drosophila_melanogaster
ENSEBUG00000005667	-	71	46.875	ENSETEG00000000412	-	59	46.875	Echinops_telfairi
ENSEBUG00000005667	-	99	48.160	ENSEASG00005001625	POLR1A	89	47.798	Equus_asinus_asinus
ENSEBUG00000005667	-	99	48.160	ENSECAG00000010092	POLR1A	92	47.798	Equus_caballus
ENSEBUG00000005667	-	99	48.160	ENSECAG00000036306	-	89	47.798	Equus_caballus
ENSEBUG00000005667	-	99	48.718	ENSECAG00000030510	-	92	47.798	Equus_caballus
ENSEBUG00000005667	-	81	66.667	ENSEEUG00000000676	POLR1A	67	66.667	Erinaceus_europaeus
ENSEBUG00000005667	-	99	48.631	ENSELUG00000012769	polr1a	88	48.141	Esox_lucius
ENSEBUG00000005667	-	99	48.444	ENSFCAG00000008966	POLR1A	88	65.891	Felis_catus
ENSEBUG00000005667	-	99	64.615	ENSFALG00000010082	POLR1A	82	64.615	Ficedula_albicollis
ENSEBUG00000005667	-	99	47.213	ENSFDAG00000013726	POLR1A	89	47.338	Fukomys_damarensis
ENSEBUG00000005667	-	99	45.424	ENSFHEG00000005996	polr1a	89	45.864	Fundulus_heteroclitus
ENSEBUG00000005667	-	99	47.861	ENSGMOG00000002230	polr1a	91	47.992	Gadus_morhua
ENSEBUG00000005667	-	91	45.985	ENSGALG00000038160	-	87	45.727	Gallus_gallus
ENSEBUG00000005667	-	99	48.928	ENSGAFG00000015266	polr1a	90	48.966	Gambusia_affinis
ENSEBUG00000005667	-	99	46.891	ENSGACG00000018791	polr1a	89	47.767	Gasterosteus_aculeatus
ENSEBUG00000005667	-	99	48.170	ENSGAGG00000004984	-	91	65.385	Gopherus_agassizii
ENSEBUG00000005667	-	99	66.667	ENSGGOG00000001788	POLR1A	88	66.667	Gorilla_gorilla
ENSEBUG00000005667	-	82	62.016	ENSHBUG00000020021	polr1a	83	51.142	Haplochromis_burtoni
ENSEBUG00000005667	-	99	47.894	ENSHGLG00000006334	POLR1A	89	47.375	Heterocephalus_glaber_female
ENSEBUG00000005667	-	99	47.739	ENSHGLG00100006614	POLR1A	89	47.222	Heterocephalus_glaber_male
ENSEBUG00000005667	-	91	50.143	ENSHCOG00000003345	polr1a	86	49.892	Hippocampus_comes
ENSEBUG00000005667	-	99	47.674	ENSIPUG00000013174	polr1a	89	47.215	Ictalurus_punctatus
ENSEBUG00000005667	-	93	66.667	ENSSTOG00000012580	POLR1A	81	66.667	Ictidomys_tridecemlineatus
ENSEBUG00000005667	-	99	48.153	ENSJJAG00000013113	Polr1a	89	47.925	Jaculus_jaculus
ENSEBUG00000005667	-	99	48.287	ENSKMAG00000007399	polr1a	89	47.600	Kryptolebias_marmoratus
ENSEBUG00000005667	-	91	53.374	ENSLBEG00000015401	polr1a	87	49.325	Labrus_bergylta
ENSEBUG00000005667	-	51	48.598	ENSLACG00000003218	polr1a	80	48.725	Latimeria_chalumnae
ENSEBUG00000005667	-	99	46.968	ENSLOCG00000010881	polr1a	90	47.610	Lepisosteus_oculatus
ENSEBUG00000005667	-	99	47.907	ENSLAFG00000014948	POLR1A	86	66.667	Loxodonta_africana
ENSEBUG00000005667	-	99	66.667	ENSMFAG00000046097	POLR1A	88	66.667	Macaca_fascicularis
ENSEBUG00000005667	-	99	66.667	ENSMMUG00000015815	POLR1A	88	66.667	Macaca_mulatta
ENSEBUG00000005667	-	99	66.667	ENSMNEG00000043313	POLR1A	88	66.667	Macaca_nemestrina
ENSEBUG00000005667	-	99	66.667	ENSMLEG00000042428	POLR1A	88	66.667	Mandrillus_leucophaeus
ENSEBUG00000005667	-	99	47.536	ENSMAMG00000016565	polr1a	89	47.669	Mastacembelus_armatus
ENSEBUG00000005667	-	99	46.824	ENSMZEG00005004915	polr1a	89	46.746	Maylandia_zebra
ENSEBUG00000005667	-	99	65.625	ENSMGAG00000013111	POLR1A	86	65.625	Meleagris_gallopavo
ENSEBUG00000005667	-	93	67.442	ENSMAUG00000008497	Polr1a	98	48.165	Mesocricetus_auratus
ENSEBUG00000005667	-	99	48.127	ENSMICG00000000757	POLR1A	81	65.116	Microcebus_murinus
ENSEBUG00000005667	-	93	67.442	ENSMOCG00000000122	Polr1a	89	47.545	Microtus_ochrogaster
ENSEBUG00000005667	-	99	49.003	ENSMMOG00000010216	polr1a	90	48.755	Mola_mola
ENSEBUG00000005667	-	91	66.667	ENSMODG00000009335	POLR1A	77	66.667	Monodelphis_domestica
ENSEBUG00000005667	-	99	47.135	ENSMALG00000013363	polr1a	95	48.000	Monopterus_albus
ENSEBUG00000005667	-	93	66.667	MGP_CAROLIEiJ_G0028494	Polr1a	81	66.667	Mus_caroli
ENSEBUG00000005667	-	93	66.667	ENSMUSG00000049553	Polr1a	99	42.838	Mus_musculus
ENSEBUG00000005667	-	99	47.055	MGP_PahariEiJ_G0022230	Polr1a	81	65.891	Mus_pahari
ENSEBUG00000005667	-	99	66.667	MGP_SPRETEiJ_G0029499	Polr1a	91	66.667	Mus_spretus
ENSEBUG00000005667	-	99	48.028	ENSMPUG00000009135	POLR1A	88	68.217	Mustela_putorius_furo
ENSEBUG00000005667	-	99	47.714	ENSMLUG00000015723	POLR1A	88	66.667	Myotis_lucifugus
ENSEBUG00000005667	-	99	47.835	ENSNGAG00000017907	Polr1a	89	48.028	Nannospalax_galili
ENSEBUG00000005667	-	99	46.908	ENSNBRG00000000519	polr1a	89	46.939	Neolamprologus_brichardi
ENSEBUG00000005667	-	99	58.333	ENSNLEG00000002264	POLR1A	88	58.333	Nomascus_leucogenys
ENSEBUG00000005667	-	68	66.667	ENSMEUG00000011665	-	58	66.667	Notamacropus_eugenii
ENSEBUG00000005667	-	98	45.514	ENSOPRG00000008269	POLR1A	81	62.963	Ochotona_princeps
ENSEBUG00000005667	-	99	47.511	ENSODEG00000003542	POLR1A	89	47.745	Octodon_degus
ENSEBUG00000005667	-	99	46.879	ENSONIG00000015895	polr1a	89	46.863	Oreochromis_niloticus
ENSEBUG00000005667	-	99	48.026	ENSOCUG00000010138	POLR1A	89	47.604	Oryctolagus_cuniculus
ENSEBUG00000005667	-	99	47.997	ENSORLG00000008753	polr1a	89	47.798	Oryzias_latipes
ENSEBUG00000005667	-	99	46.785	ENSORLG00020020726	polr1a	89	46.478	Oryzias_latipes_hni
ENSEBUG00000005667	-	99	47.101	ENSORLG00015016071	polr1a	92	47.164	Oryzias_latipes_hsok
ENSEBUG00000005667	-	99	48.285	ENSOGAG00000004031	POLR1A	89	47.992	Otolemur_garnettii
ENSEBUG00000005667	-	99	47.220	ENSOARG00000020601	POLR1A	81	66.667	Ovis_aries
ENSEBUG00000005667	-	99	65.891	ENSPPAG00000042450	POLR1A	88	65.891	Pan_paniscus
ENSEBUG00000005667	-	99	48.508	ENSPPRG00000006702	POLR1A	88	65.891	Panthera_pardus
ENSEBUG00000005667	-	99	48.227	ENSPTIG00000018783	POLR1A	88	65.891	Panthera_tigris_altaica
ENSEBUG00000005667	-	99	66.667	ENSPTRG00000012147	POLR1A	88	66.667	Pan_troglodytes
ENSEBUG00000005667	-	99	66.667	ENSPANG00000025908	POLR1A	88	66.667	Papio_anubis
ENSEBUG00000005667	-	99	48.446	ENSPKIG00000005468	polr1a	89	49.286	Paramormyrops_kingsleyae
ENSEBUG00000005667	-	70	46.061	ENSPSIG00000009321	-	88	66.154	Pelodiscus_sinensis
ENSEBUG00000005667	-	55	50.712	ENSPMGG00000009718	polr1a	81	50.712	Periophthalmus_magnuspinnatus
ENSEBUG00000005667	-	93	67.442	ENSPEMG00000022224	Polr1a	89	47.708	Peromyscus_maniculatus_bairdii
ENSEBUG00000005667	-	86	60.465	ENSPCIG00000004222	POLR1A	84	60.465	Phascolarctos_cinereus
ENSEBUG00000005667	-	99	47.468	ENSPFOG00000005025	polr1a	89	48.491	Poecilia_formosa
ENSEBUG00000005667	-	99	48.226	ENSPLAG00000021389	polr1a	89	48.267	Poecilia_latipinna
ENSEBUG00000005667	-	99	46.693	ENSPMEG00000006463	polr1a	89	47.206	Poecilia_mexicana
ENSEBUG00000005667	-	99	47.717	ENSPREG00000002389	polr1a	91	48.469	Poecilia_reticulata
ENSEBUG00000005667	-	99	47.616	ENSPPYG00000012217	POLR1A	81	66.667	Pongo_abelii
ENSEBUG00000005667	-	95	47.350	ENSPCAG00000011582	POLR1A	82	47.350	Procavia_capensis
ENSEBUG00000005667	-	99	65.116	ENSPCOG00000026987	POLR1A	88	65.116	Propithecus_coquereli
ENSEBUG00000005667	-	93	66.667	ENSPVAG00000012674	POLR1A	75	66.667	Pteropus_vampyrus
ENSEBUG00000005667	-	99	46.889	ENSPNYG00000000026	polr1a	89	46.746	Pundamilia_nyererei
ENSEBUG00000005667	-	95	54.601	ENSPNAG00000019223	polr1a	87	49.324	Pygocentrus_nattereri
ENSEBUG00000005667	-	99	47.935	ENSRNOG00000009545	Polr1a	89	47.644	Rattus_norvegicus
ENSEBUG00000005667	-	99	67.442	ENSRBIG00000028335	POLR1A	88	67.442	Rhinopithecus_bieti
ENSEBUG00000005667	-	99	67.442	ENSRROG00000031473	POLR1A	90	67.442	Rhinopithecus_roxellana
ENSEBUG00000005667	-	99	35.117	YOR341W	RPA190	87	34.671	Saccharomyces_cerevisiae
ENSEBUG00000005667	-	99	65.891	ENSSBOG00000030262	POLR1A	86	65.891	Saimiri_boliviensis_boliviensis
ENSEBUG00000005667	-	99	65.891	ENSSHAG00000014739	POLR1A	86	65.891	Sarcophilus_harrisii
ENSEBUG00000005667	-	93	64.341	ENSSFOG00015019716	polr1a	89	48.915	Scleropages_formosus
ENSEBUG00000005667	-	99	47.714	ENSSMAG00000014342	polr1a	89	47.708	Scophthalmus_maximus
ENSEBUG00000005667	-	99	47.362	ENSSDUG00000014631	polr1a	89	47.124	Seriola_dumerili
ENSEBUG00000005667	-	99	46.154	ENSSLDG00000024095	polr1a	89	45.738	Seriola_lalandi_dorsalis
ENSEBUG00000005667	-	74	66.667	ENSSARG00000003136	-	70	66.667	Sorex_araneus
ENSEBUG00000005667	-	93	62.791	ENSSPUG00000004215	POLR1A	79	62.791	Sphenodon_punctatus
ENSEBUG00000005667	-	68	46.146	ENSSPAG00000016341	polr1a	80	49.603	Stegastes_partitus
ENSEBUG00000005667	-	84	48.403	ENSSSCG00000008226	POLR1A	87	48.163	Sus_scrofa
ENSEBUG00000005667	-	99	46.382	ENSTGUG00000010704	POLR1A	91	46.164	Taeniopygia_guttata
ENSEBUG00000005667	-	99	48.231	ENSTRUG00000002210	polr1a	89	48.258	Takifugu_rubripes
ENSEBUG00000005667	-	99	43.831	ENSTNIG00000010116	polr1a	80	62.992	Tetraodon_nigroviridis
ENSEBUG00000005667	-	67	64.103	ENSTBEG00000008646	POLR1A	59	64.103	Tupaia_belangeri
ENSEBUG00000005667	-	88	66.667	ENSTTRG00000008597	POLR1A	80	66.667	Tursiops_truncatus
ENSEBUG00000005667	-	77	49.237	ENSUAMG00000012158	-	92	67.442	Ursus_americanus
ENSEBUG00000005667	-	99	67.442	ENSUMAG00000006700	POLR1A	81	67.442	Ursus_maritimus
ENSEBUG00000005667	-	93	67.442	ENSVVUG00000001245	POLR1A	88	67.442	Vulpes_vulpes
ENSEBUG00000005667	-	99	45.032	ENSXETG00000001952	polr1a	89	44.990	Xenopus_tropicalis
ENSEBUG00000005667	-	99	48.443	ENSXMAG00000004032	polr1a	89	48.024	Xiphophorus_maculatus