EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000005889 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 56729 bases
Position: chrFYBX02010185.1:193869-250597
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000009105	HVSL	PF09749.9	7.4e-60	1	1
ENSEBUP00000009117	HVSL	PF09749.9	1e-59	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000009624	-	3053	-	ENSEBUP00000009105	285 (aa)	-	-
ENSEBUT00000009634	-	3692	-	ENSEBUP00000009117	312 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000005889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000005889's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000005889	usb1	78	50.901	ENSG00000103005	USB1	99	50.704	Homo_sapiens
ENSEBUG00000005889	usb1	98	40.968	ENSAPOG00000011942	usb1	80	46.491	Acanthochromis_polyacanthus
ENSEBUG00000005889	usb1	78	50.000	ENSAMEG00000017205	USB1	83	50.000	Ailuropoda_melanoleuca
ENSEBUG00000005889	usb1	78	45.495	ENSACIG00000012234	usb1	82	45.495	Amphilophus_citrinellus
ENSEBUG00000005889	usb1	98	41.883	ENSAOCG00000014831	usb1	94	41.573	Amphiprion_ocellaris
ENSEBUG00000005889	usb1	98	41.883	ENSAPEG00000000296	usb1	94	41.573	Amphiprion_percula
ENSEBUG00000005889	usb1	89	41.634	ENSATEG00000009348	usb1	89	40.741	Anabas_testudineus
ENSEBUG00000005889	usb1	78	50.893	ENSAPLG00000002756	USB1	99	50.893	Anas_platyrhynchos
ENSEBUG00000005889	usb1	78	47.768	ENSACAG00000015481	USB1	98	47.768	Anolis_carolinensis
ENSEBUG00000005889	usb1	78	49.550	ENSANAG00000035640	USB1	84	49.550	Aotus_nancymaae
ENSEBUG00000005889	usb1	86	40.299	ENSACLG00000020586	usb1	93	39.007	Astatotilapia_calliptera
ENSEBUG00000005889	usb1	78	45.089	ENSAMXG00000040146	usb1	74	45.089	Astyanax_mexicanus
ENSEBUG00000005889	usb1	78	49.099	ENSBTAG00000015758	USB1	84	49.099	Bos_taurus
ENSEBUG00000005889	usb1	78	50.901	ENSCJAG00000011733	USB1	93	47.328	Callithrix_jacchus
ENSEBUG00000005889	usb1	78	50.000	ENSCAFG00000008556	USB1	59	50.000	Canis_familiaris
ENSEBUG00000005889	usb1	78	50.000	ENSCAFG00020009263	USB1	83	50.000	Canis_lupus_dingo
ENSEBUG00000005889	usb1	78	48.649	ENSCHIG00000024290	USB1	84	48.649	Capra_hircus
ENSEBUG00000005889	usb1	78	49.099	ENSTSYG00000006997	USB1	84	49.099	Carlito_syrichta
ENSEBUG00000005889	usb1	81	39.655	ENSCAPG00000009057	USB1	99	39.655	Cavia_aperea
ENSEBUG00000005889	usb1	81	46.983	ENSCPOG00000014325	USB1	86	46.983	Cavia_porcellus
ENSEBUG00000005889	usb1	78	50.450	ENSCCAG00000022132	USB1	84	50.450	Cebus_capucinus
ENSEBUG00000005889	usb1	78	50.901	ENSCATG00000032174	USB1	84	50.901	Cercocebus_atys
ENSEBUG00000005889	usb1	60	47.093	ENSCLAG00000007363	USB1	99	46.552	Chinchilla_lanigera
ENSEBUG00000005889	usb1	78	51.351	ENSCSAG00000004783	USB1	84	51.351	Chlorocebus_sabaeus
ENSEBUG00000005889	usb1	78	46.053	ENSCPBG00000026943	USB1	80	47.297	Chrysemys_picta_bellii
ENSEBUG00000005889	usb1	81	30.290	ENSCING00000011490	-	90	30.290	Ciona_intestinalis
ENSEBUG00000005889	usb1	80	31.092	ENSCSAVG00000000894	-	91	30.709	Ciona_savignyi
ENSEBUG00000005889	usb1	78	50.450	ENSCANG00000037135	USB1	94	46.183	Colobus_angolensis_palliatus
ENSEBUG00000005889	usb1	78	49.099	ENSCGRG00001011243	USB1	83	49.099	Cricetulus_griseus_chok1gshd
ENSEBUG00000005889	usb1	78	49.099	ENSCGRG00000013252	USB1	83	49.099	Cricetulus_griseus_crigri
ENSEBUG00000005889	usb1	99	39.871	ENSCSEG00000013881	usb1	80	48.198	Cynoglossus_semilaevis
ENSEBUG00000005889	usb1	78	45.133	ENSCVAG00000009252	usb1	97	45.575	Cyprinodon_variegatus
ENSEBUG00000005889	usb1	78	44.934	ENSDARG00000003841	usb1	96	40.672	Danio_rerio
ENSEBUG00000005889	usb1	78	49.099	ENSDORG00000001888	Usb1	84	49.099	Dipodomys_ordii
ENSEBUG00000005889	usb1	71	36.275	FBgn0037713	CG16790	77	36.275	Drosophila_melanogaster
ENSEBUG00000005889	usb1	78	45.946	ENSETEG00000019682	USB1	83	45.946	Echinops_telfairi
ENSEBUG00000005889	usb1	78	53.153	ENSEASG00005005484	USB1	84	53.153	Equus_asinus_asinus
ENSEBUG00000005889	usb1	78	52.915	ENSECAG00000019493	USB1	77	52.915	Equus_caballus
ENSEBUG00000005889	usb1	60	40.116	ENSEEUG00000000154	USB1	65	40.116	Erinaceus_europaeus
ENSEBUG00000005889	usb1	79	42.478	ENSELUG00000010974	usb1	83	42.478	Esox_lucius
ENSEBUG00000005889	usb1	78	50.000	ENSFCAG00000002693	USB1	83	50.000	Felis_catus
ENSEBUG00000005889	usb1	80	47.807	ENSFALG00000006876	USB1	83	49.099	Ficedula_albicollis
ENSEBUG00000005889	usb1	78	50.000	ENSFDAG00000010052	USB1	83	50.000	Fukomys_damarensis
ENSEBUG00000005889	usb1	90	39.789	ENSFHEG00000012334	usb1	94	43.443	Fundulus_heteroclitus
ENSEBUG00000005889	usb1	78	46.188	ENSGMOG00000004228	usb1	99	46.188	Gadus_morhua
ENSEBUG00000005889	usb1	78	48.879	ENSGALG00000035604	USB1	87	48.879	Gallus_gallus
ENSEBUG00000005889	usb1	98	39.423	ENSGAFG00000021890	usb1	94	41.219	Gambusia_affinis
ENSEBUG00000005889	usb1	89	44.747	ENSGACG00000003257	usb1	89	43.609	Gasterosteus_aculeatus
ENSEBUG00000005889	usb1	78	48.198	ENSGAGG00000022572	USB1	81	48.198	Gopherus_agassizii
ENSEBUG00000005889	usb1	78	50.450	ENSGGOG00000017147	USB1	84	50.450	Gorilla_gorilla
ENSEBUG00000005889	usb1	89	42.745	ENSHBUG00000009823	usb1	94	40.426	Haplochromis_burtoni
ENSEBUG00000005889	usb1	78	48.879	ENSHGLG00000016078	USB1	82	48.879	Heterocephalus_glaber_female
ENSEBUG00000005889	usb1	78	48.879	ENSHGLG00100005562	USB1	82	48.879	Heterocephalus_glaber_male
ENSEBUG00000005889	usb1	76	45.000	ENSHCOG00000015633	usb1	91	43.621	Hippocampus_comes
ENSEBUG00000005889	usb1	79	46.256	ENSIPUG00000008601	usb1	78	46.256	Ictalurus_punctatus
ENSEBUG00000005889	usb1	78	50.450	ENSSTOG00000007548	USB1	81	50.450	Ictidomys_tridecemlineatus
ENSEBUG00000005889	usb1	78	50.901	ENSJJAG00000021859	Usb1	83	50.901	Jaculus_jaculus
ENSEBUG00000005889	usb1	89	43.580	ENSKMAG00000007200	usb1	94	41.481	Kryptolebias_marmoratus
ENSEBUG00000005889	usb1	86	42.339	ENSLBEG00000008452	usb1	80	42.979	Labrus_bergylta
ENSEBUG00000005889	usb1	78	45.374	ENSLACG00000000105	USB1	83	45.228	Latimeria_chalumnae
ENSEBUG00000005889	usb1	79	48.908	ENSLOCG00000000465	usb1	79	49.123	Lepisosteus_oculatus
ENSEBUG00000005889	usb1	78	43.750	ENSLAFG00000002267	USB1	82	44.643	Loxodonta_africana
ENSEBUG00000005889	usb1	78	50.901	ENSMFAG00000003926	USB1	84	50.901	Macaca_fascicularis
ENSEBUG00000005889	usb1	78	50.901	ENSMMUG00000022669	USB1	84	50.901	Macaca_mulatta
ENSEBUG00000005889	usb1	78	50.901	ENSMNEG00000042487	USB1	84	50.901	Macaca_nemestrina
ENSEBUG00000005889	usb1	78	50.901	ENSMLEG00000028756	USB1	84	50.901	Mandrillus_leucophaeus
ENSEBUG00000005889	usb1	98	39.048	ENSMAMG00000015092	usb1	92	43.511	Mastacembelus_armatus
ENSEBUG00000005889	usb1	86	40.299	ENSMZEG00005010008	usb1	94	39.007	Maylandia_zebra
ENSEBUG00000005889	usb1	78	48.198	ENSMAUG00000007832	Usb1	83	48.198	Mesocricetus_auratus
ENSEBUG00000005889	usb1	78	51.351	ENSMICG00000004900	USB1	84	51.351	Microcebus_murinus
ENSEBUG00000005889	usb1	78	50.000	ENSMOCG00000022647	Usb1	83	50.000	Microtus_ochrogaster
ENSEBUG00000005889	usb1	78	47.297	ENSMMOG00000000490	usb1	86	47.297	Mola_mola
ENSEBUG00000005889	usb1	76	50.691	ENSMODG00000014067	USB1	83	50.901	Monodelphis_domestica
ENSEBUG00000005889	usb1	86	43.123	ENSMALG00000005930	usb1	90	42.963	Monopterus_albus
ENSEBUG00000005889	usb1	78	49.550	MGP_CAROLIEiJ_G0031421	Usb1	100	50.442	Mus_caroli
ENSEBUG00000005889	usb1	78	50.450	ENSMUSG00000031792	Usb1	100	51.327	Mus_musculus
ENSEBUG00000005889	usb1	78	49.550	MGP_PahariEiJ_G0023019	Usb1	100	51.282	Mus_pahari
ENSEBUG00000005889	usb1	78	48.276	MGP_SPRETEiJ_G0032540	Usb1	83	50.000	Mus_spretus
ENSEBUG00000005889	usb1	78	52.252	ENSMPUG00000004684	USB1	79	52.252	Mustela_putorius_furo
ENSEBUG00000005889	usb1	78	50.450	ENSMLUG00000007400	USB1	96	50.450	Myotis_lucifugus
ENSEBUG00000005889	usb1	78	50.901	ENSNGAG00000009703	Usb1	83	50.901	Nannospalax_galili
ENSEBUG00000005889	usb1	89	40.000	ENSNBRG00000008747	usb1	99	42.723	Neolamprologus_brichardi
ENSEBUG00000005889	usb1	69	52.284	ENSNLEG00000003340	USB1	79	52.284	Nomascus_leucogenys
ENSEBUG00000005889	usb1	78	49.099	ENSODEG00000016214	USB1	83	49.099	Octodon_degus
ENSEBUG00000005889	usb1	99	39.159	ENSONIG00000011063	usb1	94	40.071	Oreochromis_niloticus
ENSEBUG00000005889	usb1	81	50.000	ENSOANG00000012118	USB1	97	50.000	Ornithorhynchus_anatinus
ENSEBUG00000005889	usb1	81	44.828	ENSORLG00000012479	usb1	85	44.828	Oryzias_latipes
ENSEBUG00000005889	usb1	95	40.959	ENSORLG00020018671	usb1	94	40.959	Oryzias_latipes_hni
ENSEBUG00000005889	usb1	81	44.828	ENSORLG00015009679	usb1	99	40.351	Oryzias_latipes_hsok
ENSEBUG00000005889	usb1	81	45.299	ENSOMEG00000012930	usb1	84	45.299	Oryzias_melastigma
ENSEBUG00000005889	usb1	78	45.045	ENSOGAG00000003273	USB1	83	45.045	Otolemur_garnettii
ENSEBUG00000005889	usb1	78	48.649	ENSOARG00000001107	USB1	85	48.649	Ovis_aries
ENSEBUG00000005889	usb1	78	50.450	ENSPPAG00000042137	USB1	84	50.450	Pan_paniscus
ENSEBUG00000005889	usb1	78	50.000	ENSPPRG00000024797	USB1	83	50.000	Panthera_pardus
ENSEBUG00000005889	usb1	78	50.000	ENSPTIG00000007506	USB1	83	50.000	Panthera_tigris_altaica
ENSEBUG00000005889	usb1	74	50.704	ENSPTRG00000008172	USB1	99	50.704	Pan_troglodytes
ENSEBUG00000005889	usb1	78	50.901	ENSPANG00000025138	USB1	84	50.901	Papio_anubis
ENSEBUG00000005889	usb1	78	48.661	ENSPKIG00000015109	usb1	75	48.661	Paramormyrops_kingsleyae
ENSEBUG00000005889	usb1	78	39.648	ENSPSIG00000004305	USB1	99	39.648	Pelodiscus_sinensis
ENSEBUG00000005889	usb1	78	43.243	ENSPMGG00000017725	usb1	85	43.243	Periophthalmus_magnuspinnatus
ENSEBUG00000005889	usb1	89	44.922	ENSPEMG00000016183	Usb1	89	44.922	Peromyscus_maniculatus_bairdii
ENSEBUG00000005889	usb1	78	51.339	ENSPMAG00000000462	usb1	95	51.339	Petromyzon_marinus
ENSEBUG00000005889	usb1	89	41.538	ENSPFOG00000011130	usb1	96	41.481	Poecilia_formosa
ENSEBUG00000005889	usb1	89	42.023	ENSPLAG00000009820	usb1	96	41.852	Poecilia_latipinna
ENSEBUG00000005889	usb1	93	40.580	ENSPMEG00000006402	usb1	97	40.659	Poecilia_mexicana
ENSEBUG00000005889	usb1	76	42.793	ENSPREG00000001047	usb1	96	43.038	Poecilia_reticulata
ENSEBUG00000005889	usb1	73	46.667	ENSPPYG00000007401	USB1	83	46.667	Pongo_abelii
ENSEBUG00000005889	usb1	78	50.000	ENSPCOG00000022612	USB1	84	50.000	Propithecus_coquereli
ENSEBUG00000005889	usb1	78	50.450	ENSPVAG00000004613	USB1	86	50.450	Pteropus_vampyrus
ENSEBUG00000005889	usb1	95	41.091	ENSPNYG00000022262	usb1	94	40.426	Pundamilia_nyererei
ENSEBUG00000005889	usb1	78	46.667	ENSPNAG00000011736	usb1	76	46.667	Pygocentrus_nattereri
ENSEBUG00000005889	usb1	78	48.198	ENSRNOG00000013216	Usb1	83	48.198	Rattus_norvegicus
ENSEBUG00000005889	usb1	74	50.704	ENSRBIG00000044466	USB1	99	50.704	Rhinopithecus_bieti
ENSEBUG00000005889	usb1	78	50.901	ENSRROG00000029211	USB1	84	50.901	Rhinopithecus_roxellana
ENSEBUG00000005889	usb1	78	50.901	ENSSBOG00000029362	USB1	84	50.901	Saimiri_boliviensis_boliviensis
ENSEBUG00000005889	usb1	76	49.309	ENSSHAG00000006993	USB1	88	50.000	Sarcophilus_harrisii
ENSEBUG00000005889	usb1	79	45.778	ENSSFOG00015023663	usb1	71	45.778	Scleropages_formosus
ENSEBUG00000005889	usb1	82	42.629	ENSSMAG00000015834	usb1	88	41.304	Scophthalmus_maximus
ENSEBUG00000005889	usb1	78	48.214	ENSSDUG00000002949	usb1	82	48.214	Seriola_dumerili
ENSEBUG00000005889	usb1	86	42.435	ENSSLDG00000014174	usb1	90	42.279	Seriola_lalandi_dorsalis
ENSEBUG00000005889	usb1	74	46.009	ENSSPUG00000006741	USB1	99	46.009	Sphenodon_punctatus
ENSEBUG00000005889	usb1	98	40.584	ENSSPAG00000007484	usb1	84	43.529	Stegastes_partitus
ENSEBUG00000005889	usb1	78	50.901	ENSSSCG00000002807	USB1	82	50.901	Sus_scrofa
ENSEBUG00000005889	usb1	74	49.763	ENSTGUG00000004792	USB1	98	46.400	Taeniopygia_guttata
ENSEBUG00000005889	usb1	99	37.821	ENSTRUG00000021069	usb1	84	44.248	Takifugu_rubripes
ENSEBUG00000005889	usb1	78	45.701	ENSTNIG00000000626	usb1	83	45.701	Tetraodon_nigroviridis
ENSEBUG00000005889	usb1	78	37.838	ENSTBEG00000001507	USB1	96	37.838	Tupaia_belangeri
ENSEBUG00000005889	usb1	78	51.351	ENSUAMG00000016823	USB1	83	51.351	Ursus_americanus
ENSEBUG00000005889	usb1	74	50.704	ENSUMAG00000021369	USB1	99	50.704	Ursus_maritimus
ENSEBUG00000005889	usb1	78	50.000	ENSVVUG00000023700	USB1	86	50.000	Vulpes_vulpes
ENSEBUG00000005889	usb1	76	48.402	ENSXETG00000013795	usb1	89	48.879	Xenopus_tropicalis
ENSEBUG00000005889	usb1	89	42.412	ENSXMAG00000024687	usb1	87	40.977	Xiphophorus_maculatus