EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000006581 (Gene tree)
Gene ID: -
Gene Symbol: rab12
Alias: zgc:111945
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 24437 bases
Position: chrFYBX02009839.1:5091172-5115608
Accession: ZDB-GENE-050522-555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000010247	MMR_HSR1	PF01926.23	4.8e-07	1	1
ENSEBUP00000010235	MMR_HSR1	PF01926.23	5.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000010791	-	1024	-	ENSEBUP00000010247	205 (aa)	-	-
ENSEBUT00000010779	-	1907	-	ENSEBUP00000010235	220 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000006581's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000006581's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000006581	rab12	79	31.429	ENSEBUG00000013459	arfrp1	71	31.429
ENSEBUG00000006581	rab12	81	35.088	ENSEBUG00000004967	rab9b	83	35.088
ENSEBUG00000006581	rab12	81	32.558	ENSEBUG00000002259	RAB29	82	32.558
ENSEBUG00000006581	rab12	57	31.624	ENSEBUG00000016527	-	50	31.624
ENSEBUG00000006581	rab12	81	43.713	ENSEBUG00000015447	-	76	43.713
ENSEBUG00000006581	rab12	83	36.842	ENSEBUG00000014794	rab5c	80	36.842
ENSEBUG00000006581	rab12	86	39.888	ENSEBUG00000015845	-	80	39.888
ENSEBUG00000006581	rab12	81	44.910	ENSEBUG00000007493	rab11a	76	44.910
ENSEBUG00000006581	rab12	77	36.025	ENSEBUG00000008934	rab36	60	36.025
ENSEBUG00000006581	rab12	81	32.934	ENSEBUG00000003339	-	81	32.934
ENSEBUG00000006581	rab12	68	36.364	ENSEBUG00000001416	-	55	36.364
ENSEBUG00000006581	rab12	76	35.032	ENSEBUG00000011510	-	83	34.706
ENSEBUG00000006581	rab12	79	32.716	ENSEBUG00000003784	rhebl1	93	33.553
ENSEBUG00000006581	rab12	82	47.619	ENSEBUG00000015886	-	83	47.619
ENSEBUG00000006581	rab12	57	31.624	ENSEBUG00000005056	arl4aa	54	31.624
ENSEBUG00000006581	rab12	80	35.366	ENSEBUG00000012680	-	68	35.366
ENSEBUG00000006581	rab12	78	40.252	ENSEBUG00000000963	-	87	40.000
ENSEBUG00000006581	rab12	82	38.857	ENSEBUG00000009003	-	76	38.286
ENSEBUG00000006581	rab12	80	42.424	ENSEBUG00000004971	-	76	42.424
ENSEBUG00000006581	rab12	53	34.234	ENSEBUG00000014186	-	85	30.159
ENSEBUG00000006581	rab12	82	33.136	ENSEBUG00000010861	-	67	33.136
ENSEBUG00000006581	rab12	80	47.273	ENSEBUG00000011775	rab11ba	79	47.273

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000006581	rab12	92	66.321	ENSG00000206418	RAB12	79	66.321	Homo_sapiens
ENSEBUG00000006581	rab12	82	69.643	ENSAMEG00000007452	RAB12	73	69.643	Ailuropoda_melanoleuca
ENSEBUG00000006581	rab12	89	66.484	ENSACIG00000020616	rab12	77	65.079	Amphilophus_citrinellus
ENSEBUG00000006581	rab12	90	66.304	ENSAOCG00000002130	rab12	76	66.304	Amphiprion_ocellaris
ENSEBUG00000006581	rab12	90	66.304	ENSAPEG00000013255	rab12	76	66.304	Amphiprion_percula
ENSEBUG00000006581	rab12	89	66.484	ENSATEG00000019683	rab12	78	65.079	Anabas_testudineus
ENSEBUG00000006581	rab12	93	66.316	ENSACAG00000003360	RAB12	76	66.154	Anolis_carolinensis
ENSEBUG00000006581	rab12	89	67.582	ENSACLG00000007696	rab12	78	66.138	Astatotilapia_calliptera
ENSEBUG00000006581	rab12	91	67.196	ENSAMXG00000004882	rab12	77	67.196	Astyanax_mexicanus
ENSEBUG00000006581	rab12	92	66.839	ENSBTAG00000010356	RAB12	76	68.649	Bos_taurus
ENSEBUG00000006581	rab12	92	66.321	ENSCJAG00000015468	RAB12	53	69.832	Callithrix_jacchus
ENSEBUG00000006581	rab12	92	66.839	ENSCAFG00020023721	RAB12	64	68.649	Canis_lupus_dingo
ENSEBUG00000006581	rab12	92	66.839	ENSCHIG00000016103	RAB12	76	68.649	Capra_hircus
ENSEBUG00000006581	rab12	87	70.391	ENSCPOG00000022689	RAB12	85	70.391	Cavia_porcellus
ENSEBUG00000006581	rab12	92	66.321	ENSCCAG00000022862	RAB12	79	66.321	Cebus_capucinus
ENSEBUG00000006581	rab12	92	66.321	ENSCATG00000037784	RAB12	80	66.321	Cercocebus_atys
ENSEBUG00000006581	rab12	92	66.321	ENSCSAG00000017569	RAB12	52	69.832	Chlorocebus_sabaeus
ENSEBUG00000006581	rab12	93	67.179	ENSCPBG00000028375	RAB12	80	67.179	Chrysemys_picta_bellii
ENSEBUG00000006581	rab12	94	66.839	ENSCANG00000031453	RAB12	85	66.839	Colobus_angolensis_palliatus
ENSEBUG00000006581	rab12	93	66.154	ENSCGRG00001006958	Rab12	66	66.495	Cricetulus_griseus_chok1gshd
ENSEBUG00000006581	rab12	89	66.484	ENSCSEG00000016933	rab12	78	66.138	Cynoglossus_semilaevis
ENSEBUG00000006581	rab12	89	67.582	ENSCVAG00000003539	rab12	77	66.138	Cyprinodon_variegatus
ENSEBUG00000006581	rab12	96	64.322	ENSDARG00000089428	rab12	85	64.322	Danio_rerio
ENSEBUG00000006581	rab12	92	66.839	ENSDORG00000008920	Rab12	81	68.649	Dipodomys_ordii
ENSEBUG00000006581	rab12	92	66.839	ENSEASG00005002926	RAB12	63	68.649	Equus_asinus_asinus
ENSEBUG00000006581	rab12	90	68.649	ENSECAG00000007384	RAB12	54	68.649	Equus_caballus
ENSEBUG00000006581	rab12	92	63.021	ENSELUG00000007123	rab12	80	63.021	Esox_lucius
ENSEBUG00000006581	rab12	92	66.839	ENSFCAG00000027710	RAB12	55	68.649	Felis_catus
ENSEBUG00000006581	rab12	89	67.582	ENSFHEG00000004319	rab12	74	67.582	Fundulus_heteroclitus
ENSEBUG00000006581	rab12	94	62.621	ENSGMOG00000012335	rab12	76	67.956	Gadus_morhua
ENSEBUG00000006581	rab12	93	66.667	ENSGALG00000033608	RAB12	78	66.667	Gallus_gallus
ENSEBUG00000006581	rab12	87	67.039	ENSGACG00000016639	rab12	86	65.591	Gasterosteus_aculeatus
ENSEBUG00000006581	rab12	93	67.179	ENSGAGG00000007278	RAB12	80	67.179	Gopherus_agassizii
ENSEBUG00000006581	rab12	89	67.582	ENSHBUG00000008497	rab12	78	66.138	Haplochromis_burtoni
ENSEBUG00000006581	rab12	85	69.714	ENSHGLG00000006189	RAB12	75	66.154	Heterocephalus_glaber_female
ENSEBUG00000006581	rab12	91	63.684	ENSHCOG00000012376	rab12	78	63.684	Hippocampus_comes
ENSEBUG00000006581	rab12	92	65.445	ENSIPUG00000017401	rab12	81	63.452	Ictalurus_punctatus
ENSEBUG00000006581	rab12	94	67.188	ENSSTOG00000025122	RAB12	81	68.649	Ictidomys_tridecemlineatus
ENSEBUG00000006581	rab12	92	66.321	ENSJJAG00000019064	Rab12	85	66.321	Jaculus_jaculus
ENSEBUG00000006581	rab12	91	67.725	ENSKMAG00000020056	rab12	79	67.725	Kryptolebias_marmoratus
ENSEBUG00000006581	rab12	89	65.934	ENSLBEG00000013756	rab12	78	64.550	Labrus_bergylta
ENSEBUG00000006581	rab12	90	68.478	ENSLACG00000010461	RAB12	78	66.495	Latimeria_chalumnae
ENSEBUG00000006581	rab12	92	66.667	ENSLOCG00000002680	rab12	78	65.979	Lepisosteus_oculatus
ENSEBUG00000006581	rab12	92	66.321	ENSMFAG00000043551	RAB12	78	66.321	Macaca_fascicularis
ENSEBUG00000006581	rab12	92	66.321	ENSMNEG00000040853	RAB12	76	66.321	Macaca_nemestrina
ENSEBUG00000006581	rab12	89	66.484	ENSMAMG00000006862	rab12	78	65.079	Mastacembelus_armatus
ENSEBUG00000006581	rab12	89	67.582	ENSMZEG00005024316	rab12	78	66.138	Maylandia_zebra
ENSEBUG00000006581	rab12	84	70.349	ENSMGAG00000009197	RAB12	84	70.349	Meleagris_gallopavo
ENSEBUG00000006581	rab12	93	66.154	ENSMAUG00000008371	Rab12	66	66.495	Mesocricetus_auratus
ENSEBUG00000006581	rab12	92	66.839	ENSMICG00000030661	RAB12	81	66.839	Microcebus_murinus
ENSEBUG00000006581	rab12	97	65.152	ENSMOCG00000000452	Rab12	84	68.108	Microtus_ochrogaster
ENSEBUG00000006581	rab12	90	68.649	ENSMODG00000021452	RAB12	55	68.649	Monodelphis_domestica
ENSEBUG00000006581	rab12	91	65.079	ENSMALG00000015762	rab12	78	65.079	Monopterus_albus
ENSEBUG00000006581	rab12	93	66.667	MGP_CAROLIEiJ_G0021839	Rab12	67	66.667	Mus_caroli
ENSEBUG00000006581	rab12	93	66.667	ENSMUSG00000023460	Rab12	80	66.667	Mus_musculus
ENSEBUG00000006581	rab12	93	66.667	MGP_PahariEiJ_G0020826	Rab12	80	66.667	Mus_pahari
ENSEBUG00000006581	rab12	93	66.667	MGP_SPRETEiJ_G0022750	Rab12	67	66.667	Mus_spretus
ENSEBUG00000006581	rab12	92	66.839	ENSMLUG00000002883	RAB12	76	68.649	Myotis_lucifugus
ENSEBUG00000006581	rab12	92	58.031	ENSNGAG00000019722	-	77	58.031	Nannospalax_galili
ENSEBUG00000006581	rab12	97	64.851	ENSNGAG00000024103	-	86	64.851	Nannospalax_galili
ENSEBUG00000006581	rab12	89	67.582	ENSNBRG00000014428	rab12	78	66.138	Neolamprologus_brichardi
ENSEBUG00000006581	rab12	92	66.321	ENSNLEG00000006939	RAB12	79	66.321	Nomascus_leucogenys
ENSEBUG00000006581	rab12	92	66.839	ENSMEUG00000000493	RAB12	75	68.649	Notamacropus_eugenii
ENSEBUG00000006581	rab12	85	70.690	ENSODEG00000006414	RAB12	84	68.649	Octodon_degus
ENSEBUG00000006581	rab12	89	67.582	ENSONIG00000018469	rab12	78	66.138	Oreochromis_niloticus
ENSEBUG00000006581	rab12	89	67.582	ENSORLG00000003902	rab12	78	66.138	Oryzias_latipes
ENSEBUG00000006581	rab12	92	66.489	ENSORLG00020005131	rab12	82	65.128	Oryzias_latipes_hni
ENSEBUG00000006581	rab12	89	67.582	ENSORLG00015007869	rab12	75	67.582	Oryzias_latipes_hsok
ENSEBUG00000006581	rab12	89	67.582	ENSOMEG00000008191	rab12	78	66.138	Oryzias_melastigma
ENSEBUG00000006581	rab12	87	69.274	ENSOGAG00000028002	RAB12	85	69.274	Otolemur_garnettii
ENSEBUG00000006581	rab12	87	68.715	ENSOARG00000000728	RAB12	76	67.391	Ovis_aries
ENSEBUG00000006581	rab12	85	70.115	ENSPPAG00000009152	RAB12	82	70.115	Pan_paniscus
ENSEBUG00000006581	rab12	92	66.839	ENSPPRG00000024521	RAB12	76	68.649	Panthera_pardus
ENSEBUG00000006581	rab12	92	66.321	ENSPTRG00000009853	RAB12	79	66.321	Pan_troglodytes
ENSEBUG00000006581	rab12	92	66.321	ENSPANG00000009320	RAB12	78	66.321	Papio_anubis
ENSEBUG00000006581	rab12	89	68.132	ENSPKIG00000008579	rab12	76	68.132	Paramormyrops_kingsleyae
ENSEBUG00000006581	rab12	89	68.132	ENSPMGG00000001890	rab12	76	67.391	Periophthalmus_magnuspinnatus
ENSEBUG00000006581	rab12	93	66.667	ENSPEMG00000021032	Rab12	67	67.010	Peromyscus_maniculatus_bairdii
ENSEBUG00000006581	rab12	92	64.583	ENSPFOG00000001579	rab12	77	65.608	Poecilia_formosa
ENSEBUG00000006581	rab12	92	64.583	ENSPLAG00000013594	rab12	77	65.608	Poecilia_latipinna
ENSEBUG00000006581	rab12	92	64.583	ENSPMEG00000010417	rab12	77	65.608	Poecilia_mexicana
ENSEBUG00000006581	rab12	92	64.583	ENSPREG00000017487	rab12	77	65.608	Poecilia_reticulata
ENSEBUG00000006581	rab12	92	66.321	ENSPPYG00000009015	-	53	69.832	Pongo_abelii
ENSEBUG00000006581	rab12	92	66.839	ENSPCAG00000015007	RAB12	76	68.649	Procavia_capensis
ENSEBUG00000006581	rab12	92	66.321	ENSPCOG00000019816	RAB12	79	66.321	Propithecus_coquereli
ENSEBUG00000006581	rab12	92	66.321	ENSPVAG00000002757	RAB12	76	68.108	Pteropus_vampyrus
ENSEBUG00000006581	rab12	89	67.582	ENSPNYG00000023905	rab12	78	66.138	Pundamilia_nyererei
ENSEBUG00000006581	rab12	89	67.582	ENSPNYG00000005654	rab12	78	66.138	Pundamilia_nyererei
ENSEBUG00000006581	rab12	91	66.667	ENSPNAG00000015031	rab12	77	66.667	Pygocentrus_nattereri
ENSEBUG00000006581	rab12	92	66.839	ENSRNOG00000019295	Rab12	78	66.839	Rattus_norvegicus
ENSEBUG00000006581	rab12	92	66.321	ENSRBIG00000028760	RAB12	83	66.321	Rhinopithecus_bieti
ENSEBUG00000006581	rab12	92	66.321	ENSRROG00000019249	RAB12	81	66.321	Rhinopithecus_roxellana
ENSEBUG00000006581	rab12	93	66.667	ENSSBOG00000021125	RAB12	74	66.667	Saimiri_boliviensis_boliviensis
ENSEBUG00000006581	rab12	92	66.839	ENSSHAG00000001489	RAB12	85	66.839	Sarcophilus_harrisii
ENSEBUG00000006581	rab12	89	65.934	ENSSMAG00000012678	rab12	78	64.550	Scophthalmus_maximus
ENSEBUG00000006581	rab12	89	66.484	ENSSDUG00000008505	rab12	78	65.079	Seriola_dumerili
ENSEBUG00000006581	rab12	89	66.484	ENSSLDG00000022239	rab12	78	65.079	Seriola_lalandi_dorsalis
ENSEBUG00000006581	rab12	93	66.492	ENSSPUG00000003222	RAB12	81	64.322	Sphenodon_punctatus
ENSEBUG00000006581	rab12	90	67.391	ENSSPAG00000010822	rab12	76	67.391	Stegastes_partitus
ENSEBUG00000006581	rab12	92	66.839	ENSSSCG00000038026	RAB12	76	68.649	Sus_scrofa
ENSEBUG00000006581	rab12	92	66.321	ENSTGUG00000009889	RAB12	79	64.646	Taeniopygia_guttata
ENSEBUG00000006581	rab12	96	63.500	ENSTRUG00000024455	rab12	83	63.500	Takifugu_rubripes
ENSEBUG00000006581	rab12	95	62.626	ENSTNIG00000014859	rab12	82	62.626	Tetraodon_nigroviridis
ENSEBUG00000006581	rab12	93	65.445	ENSTTRG00000008711	RAB12	83	67.027	Tursiops_truncatus
ENSEBUG00000006581	rab12	92	66.839	ENSUAMG00000018092	RAB12	76	68.649	Ursus_americanus
ENSEBUG00000006581	rab12	93	67.016	ENSVVUG00000011748	RAB12	83	68.649	Vulpes_vulpes
ENSEBUG00000006581	rab12	91	68.280	ENSXETG00000004289	rab12	60	68.280	Xenopus_tropicalis
ENSEBUG00000006581	rab12	92	64.062	ENSXCOG00000019310	rab12	77	65.079	Xiphophorus_couchianus
ENSEBUG00000006581	rab12	92	64.062	ENSXMAG00000023617	rab12	75	66.484	Xiphophorus_maculatus