EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000007174 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 13434 bases
Position: chrFYBX02010628.1:2373746-2387179
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000011167	zf-CCHC	PF00098.23	8.9e-07	1	1
ENSEBUP00000011174	RRM_5	PF13893.6	3.1e-11	1	2
ENSEBUP00000011174	RRM_5	PF13893.6	3.1e-11	2	2
ENSEBUP00000011167	RRM_5	PF13893.6	2.5e-10	1	2
ENSEBUP00000011167	RRM_5	PF13893.6	2.5e-10	2	2
ENSEBUP00000011174	RRM_1	PF00076.22	6.9e-33	1	2
ENSEBUP00000011174	RRM_1	PF00076.22	6.9e-33	2	2
ENSEBUP00000011167	RRM_1	PF00076.22	5.9e-32	1	2
ENSEBUP00000011167	RRM_1	PF00076.22	5.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000011729	-	3641	-	ENSEBUP00000011167	356 (aa)	-	-
ENSEBUT00000011737	-	531	-	ENSEBUP00000011174	176 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000007174's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000007174's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000007174	-	88	42.384	ENSEBUG00000008661	-	62	41.463
ENSEBUG00000007174	-	97	88.506	ENSEBUG00000008142	-	95	76.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000007174	-	88	57.143	ENSAPOG00000012375	-	96	57.143	Acanthochromis_polyacanthus
ENSEBUG00000007174	-	88	60.000	ENSACIG00000016472	-	86	60.000	Amphilophus_citrinellus
ENSEBUG00000007174	-	88	57.857	ENSAOCG00000010907	-	96	57.857	Amphiprion_ocellaris
ENSEBUG00000007174	-	88	57.857	ENSAPEG00000009476	-	87	57.857	Amphiprion_percula
ENSEBUG00000007174	-	88	60.000	ENSATEG00000001912	-	90	59.574	Anabas_testudineus
ENSEBUG00000007174	-	88	54.286	ENSAMXG00000032121	rbm4.2	86	54.286	Astyanax_mexicanus
ENSEBUG00000007174	-	97	56.322	ENSAMXG00000036611	rbm4.1	96	43.324	Astyanax_mexicanus
ENSEBUG00000007174	-	88	48.344	ENSCPBG00000023666	-	92	48.344	Chrysemys_picta_bellii
ENSEBUG00000007174	-	88	57.857	ENSCSEG00000007739	-	98	57.857	Cynoglossus_semilaevis
ENSEBUG00000007174	-	88	45.946	ENSDARG00000044545	zgc:77262	50	42.529	Danio_rerio
ENSEBUG00000007174	-	97	55.747	ENSDARG00000036386	rbm4.1	79	59.286	Danio_rerio
ENSEBUG00000007174	-	88	56.429	ENSFHEG00000003483	-	99	56.429	Fundulus_heteroclitus
ENSEBUG00000007174	-	86	55.714	ENSGAFG00000019301	-	90	55.714	Gambusia_affinis
ENSEBUG00000007174	-	97	55.747	ENSGACG00000000822	rbm4.1	55	58.730	Gasterosteus_aculeatus
ENSEBUG00000007174	-	88	47.682	ENSGAGG00000014558	-	92	47.682	Gopherus_agassizii
ENSEBUG00000007174	-	88	60.140	ENSHBUG00000011624	-	90	60.140	Haplochromis_burtoni
ENSEBUG00000007174	-	88	56.429	ENSHCOG00000011413	-	81	56.429	Hippocampus_comes
ENSEBUG00000007174	-	88	48.344	ENSIPUG00000021035	zgc:77262	51	43.678	Ictalurus_punctatus
ENSEBUG00000007174	-	97	55.172	ENSLBEG00000019756	-	91	53.086	Labrus_bergylta
ENSEBUG00000007174	-	88	50.993	ENSLACG00000006343	zgc:77262	67	50.993	Latimeria_chalumnae
ENSEBUG00000007174	-	88	57.343	ENSLOCG00000002772	rbm4.1	93	57.343	Lepisosteus_oculatus
ENSEBUG00000007174	-	88	47.143	ENSMZEG00005028161	-	88	44.242	Maylandia_zebra
ENSEBUG00000007174	-	88	60.714	ENSMZEG00005028160	-	93	60.714	Maylandia_zebra
ENSEBUG00000007174	-	81	55.245	ENSMZEG00005009210	-	77	55.245	Maylandia_zebra
ENSEBUG00000007174	-	88	60.284	ENSMMOG00000020484	-	86	60.284	Mola_mola
ENSEBUG00000007174	-	97	56.322	ENSMALG00000020557	-	50	56.186	Monopterus_albus
ENSEBUG00000007174	-	88	60.839	ENSNBRG00000017763	-	90	60.839	Neolamprologus_brichardi
ENSEBUG00000007174	-	97	57.471	ENSPKIG00000020805	rbm4.1	86	61.429	Paramormyrops_kingsleyae
ENSEBUG00000007174	-	88	54.305	ENSPMGG00000004331	rbm4.1	98	54.305	Periophthalmus_magnuspinnatus
ENSEBUG00000007174	-	97	61.494	ENSPMAG00000003433	rbm4.2	83	65.746	Petromyzon_marinus
ENSEBUG00000007174	-	88	54.362	ENSPLAG00000018569	-	92	54.362	Poecilia_latipinna
ENSEBUG00000007174	-	88	54.362	ENSPMEG00000006278	-	92	54.362	Poecilia_mexicana
ENSEBUG00000007174	-	97	52.874	ENSPREG00000003764	-	51	55.618	Poecilia_reticulata
ENSEBUG00000007174	-	88	60.140	ENSPNYG00000004649	-	90	60.140	Pundamilia_nyererei
ENSEBUG00000007174	-	88	47.445	ENSSFOG00015018567	zgc:77262	88	47.445	Scleropages_formosus
ENSEBUG00000007174	-	88	57.143	ENSSMAG00000007575	-	99	57.143	Scophthalmus_maximus
ENSEBUG00000007174	-	97	55.747	ENSSDUG00000003936	-	50	57.436	Seriola_dumerili
ENSEBUG00000007174	-	97	55.747	ENSSLDG00000013157	-	50	56.410	Seriola_lalandi_dorsalis
ENSEBUG00000007174	-	97	56.897	ENSTRUG00000013328	-	50	57.513	Takifugu_rubripes
ENSEBUG00000007174	-	97	55.172	ENSTNIG00000004821	rbm4.1	56	57.672	Tetraodon_nigroviridis
ENSEBUG00000007174	-	97	57.471	ENSTNIG00000000316	-	50	58.031	Tetraodon_nigroviridis
ENSEBUG00000007174	-	91	63.750	ENSXETG00000026649	rbm4b	93	44.675	Xenopus_tropicalis
ENSEBUG00000007174	-	94	50.303	ENSXCOG00000003730	-	96	55.714	Xiphophorus_couchianus
ENSEBUG00000007174	-	97	53.448	ENSXMAG00000008059	-	93	42.609	Xiphophorus_maculatus