EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000007454 (Gene tree)
Gene ID: -
Gene Symbol: trmu
Alias: zgc:110555
Full Name: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 55038 bases
Position: chrFYBX02000166.1:583729-638766
Accession: ZDB-GENE-050522-540
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000011621	tRNA_Me_trans	PF03054.16	1.1e-120	1	1
ENSEBUP00000011650	tRNA_Me_trans	PF03054.16	1.3e-102	1	1
ENSEBUP00000011635	tRNA_Me_trans	PF03054.16	3.1e-89	1	2
ENSEBUP00000011635	tRNA_Me_trans	PF03054.16	3.1e-89	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000012194	-	5015	-	ENSEBUP00000011621	404 (aa)	-	-
ENSEBUT00000012224	-	3838	-	ENSEBUP00000011650	347 (aa)	-	-
ENSEBUT00000012208	-	4868	-	ENSEBUP00000011635	355 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000007454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000007454's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000007454	trmu	99	53.769	ENSG00000100416	TRMU	96	59.524	Homo_sapiens
ENSEBUG00000007454	trmu	100	55.620	ENSAPOG00000014458	trmu	93	56.997	Acanthochromis_polyacanthus
ENSEBUG00000007454	trmu	99	53.509	ENSAMEG00000003319	TRMU	93	55.128	Ailuropoda_melanoleuca
ENSEBUG00000007454	trmu	100	55.043	ENSACIG00000002101	trmu	94	56.234	Amphilophus_citrinellus
ENSEBUG00000007454	trmu	100	56.196	ENSAOCG00000013155	trmu	93	57.506	Amphiprion_ocellaris
ENSEBUG00000007454	trmu	100	55.908	ENSAPEG00000013350	trmu	93	57.252	Amphiprion_percula
ENSEBUG00000007454	trmu	99	55.652	ENSATEG00000007814	trmu	95	56.203	Anabas_testudineus
ENSEBUG00000007454	trmu	94	53.175	ENSAPLG00000016380	TRMU	95	53.175	Anas_platyrhynchos
ENSEBUG00000007454	trmu	99	53.731	ENSACAG00000007720	TRMU	95	53.731	Anolis_carolinensis
ENSEBUG00000007454	trmu	99	53.509	ENSANAG00000038053	TRMU	94	53.383	Aotus_nancymaae
ENSEBUG00000007454	trmu	100	55.043	ENSACLG00000005395	trmu	97	55.256	Astatotilapia_calliptera
ENSEBUG00000007454	trmu	99	53.757	ENSAMXG00000005282	trmu	94	54.847	Astyanax_mexicanus
ENSEBUG00000007454	trmu	100	53.218	ENSBTAG00000005595	TRMU	96	53.218	Bos_taurus
ENSEBUG00000007454	trmu	96	39.181	WBGene00007114	mttu-1	99	38.442	Caenorhabditis_elegans
ENSEBUG00000007454	trmu	99	53.509	ENSCJAG00000000198	TRMU	94	53.383	Callithrix_jacchus
ENSEBUG00000007454	trmu	99	53.801	ENSCAFG00000000779	TRMU	94	53.350	Canis_familiaris
ENSEBUG00000007454	trmu	99	53.801	ENSCAFG00020009184	TRMU	94	53.350	Canis_lupus_dingo
ENSEBUG00000007454	trmu	99	53.598	ENSCHIG00000017074	TRMU	96	53.598	Capra_hircus
ENSEBUG00000007454	trmu	99	53.769	ENSTSYG00000003853	TRMU	94	53.769	Carlito_syrichta
ENSEBUG00000007454	trmu	94	52.130	ENSCAPG00000013034	TRMU	93	52.130	Cavia_aperea
ENSEBUG00000007454	trmu	99	55.848	ENSCPOG00000020780	TRMU	92	56.633	Cavia_porcellus
ENSEBUG00000007454	trmu	99	53.216	ENSCCAG00000021641	TRMU	94	53.133	Cebus_capucinus
ENSEBUG00000007454	trmu	99	52.381	ENSCATG00000032800	TRMU	94	52.381	Cercocebus_atys
ENSEBUG00000007454	trmu	99	54.094	ENSCLAG00000017269	TRMU	92	55.357	Chinchilla_lanigera
ENSEBUG00000007454	trmu	99	52.632	ENSCSAG00000005279	TRMU	94	52.632	Chlorocebus_sabaeus
ENSEBUG00000007454	trmu	94	53.968	ENSCPBG00000011621	TRMU	94	53.968	Chrysemys_picta_bellii
ENSEBUG00000007454	trmu	99	44.737	ENSCING00000019371	-	95	44.615	Ciona_intestinalis
ENSEBUG00000007454	trmu	99	52.513	ENSCANG00000041645	TRMU	94	52.513	Colobus_angolensis_palliatus
ENSEBUG00000007454	trmu	99	52.736	ENSCGRG00001001739	Trmu	95	52.736	Cricetulus_griseus_chok1gshd
ENSEBUG00000007454	trmu	99	48.259	ENSCGRG00000002781	Trmu	95	48.259	Cricetulus_griseus_crigri
ENSEBUG00000007454	trmu	99	51.884	ENSCSEG00000012382	trmu	93	52.926	Cynoglossus_semilaevis
ENSEBUG00000007454	trmu	100	55.331	ENSCVAG00000001366	trmu	94	56.489	Cyprinodon_variegatus
ENSEBUG00000007454	trmu	99	53.623	ENSDARG00000043734	trmu	94	53.904	Danio_rerio
ENSEBUG00000007454	trmu	56	55.947	ENSDNOG00000047245	-	80	55.947	Dasypus_novemcinctus
ENSEBUG00000007454	trmu	99	53.644	ENSDORG00000007455	Trmu	95	54.707	Dipodomys_ordii
ENSEBUG00000007454	trmu	98	42.229	FBgn0040337	CG3021	98	42.040	Drosophila_melanogaster
ENSEBUG00000007454	trmu	54	58.108	ENSETEG00000009394	-	65	58.108	Echinops_telfairi
ENSEBUG00000007454	trmu	99	53.801	ENSEASG00005021725	TRMU	92	55.641	Equus_asinus_asinus
ENSEBUG00000007454	trmu	99	53.801	ENSECAG00000000467	TRMU	91	55.641	Equus_caballus
ENSEBUG00000007454	trmu	100	54.179	ENSELUG00000009464	trmu	99	54.472	Esox_lucius
ENSEBUG00000007454	trmu	99	53.644	ENSFCAG00000006533	TRMU	92	54.962	Felis_catus
ENSEBUG00000007454	trmu	94	52.850	ENSFALG00000010035	TRMU	96	52.850	Ficedula_albicollis
ENSEBUG00000007454	trmu	91	53.406	ENSFDAG00000017472	TRMU	92	53.406	Fukomys_damarensis
ENSEBUG00000007454	trmu	100	55.620	ENSFHEG00000003162	trmu	97	55.556	Fundulus_heteroclitus
ENSEBUG00000007454	trmu	99	49.570	ENSGMOG00000001323	trmu	96	51.399	Gadus_morhua
ENSEBUG00000007454	trmu	99	54.390	ENSGALG00000031922	TRMU	96	54.390	Gallus_gallus
ENSEBUG00000007454	trmu	100	55.043	ENSGAFG00000013331	trmu	93	56.489	Gambusia_affinis
ENSEBUG00000007454	trmu	99	53.714	ENSGACG00000019024	trmu	93	54.774	Gasterosteus_aculeatus
ENSEBUG00000007454	trmu	99	53.518	ENSGGOG00000000203	TRMU	94	53.518	Gorilla_gorilla
ENSEBUG00000007454	trmu	98	56.012	ENSHBUG00000023421	trmu	97	55.256	Haplochromis_burtoni
ENSEBUG00000007454	trmu	99	54.094	ENSHGLG00000009278	TRMU	92	55.102	Heterocephalus_glaber_female
ENSEBUG00000007454	trmu	99	54.094	ENSHGLG00100018863	TRMU	92	55.102	Heterocephalus_glaber_male
ENSEBUG00000007454	trmu	99	56.281	ENSHCOG00000013459	trmu	95	56.281	Hippocampus_comes
ENSEBUG00000007454	trmu	99	55.685	ENSIPUG00000009785	trmu	95	56.266	Ictalurus_punctatus
ENSEBUG00000007454	trmu	99	53.801	ENSSTOG00000010993	TRMU	92	54.847	Ictidomys_tridecemlineatus
ENSEBUG00000007454	trmu	97	55.076	ENSJJAG00000000667	Trmu	93	55.076	Jaculus_jaculus
ENSEBUG00000007454	trmu	100	53.890	ENSKMAG00000008516	trmu	95	54.750	Kryptolebias_marmoratus
ENSEBUG00000007454	trmu	99	56.812	ENSLBEG00000018831	trmu	93	58.312	Labrus_bergylta
ENSEBUG00000007454	trmu	98	57.179	ENSLACG00000013713	TRMU	94	57.179	Latimeria_chalumnae
ENSEBUG00000007454	trmu	97	57.801	ENSLOCG00000016066	trmu	93	57.801	Lepisosteus_oculatus
ENSEBUG00000007454	trmu	99	46.059	ENSLAFG00000005129	TRMU	96	46.059	Loxodonta_africana
ENSEBUG00000007454	trmu	99	52.632	ENSMFAG00000039767	TRMU	94	52.632	Macaca_fascicularis
ENSEBUG00000007454	trmu	99	52.632	ENSMMUG00000000807	TRMU	94	52.632	Macaca_mulatta
ENSEBUG00000007454	trmu	99	52.632	ENSMNEG00000028164	TRMU	94	52.632	Macaca_nemestrina
ENSEBUG00000007454	trmu	99	52.381	ENSMLEG00000033884	TRMU	94	52.381	Mandrillus_leucophaeus
ENSEBUG00000007454	trmu	99	56.851	ENSMAMG00000004717	trmu	95	56.784	Mastacembelus_armatus
ENSEBUG00000007454	trmu	100	55.043	ENSMZEG00005015797	trmu	94	56.743	Maylandia_zebra
ENSEBUG00000007454	trmu	80	54.217	ENSMGAG00000007550	TRMU	96	54.217	Meleagris_gallopavo
ENSEBUG00000007454	trmu	99	52.985	ENSMAUG00000022282	Trmu	95	52.985	Mesocricetus_auratus
ENSEBUG00000007454	trmu	99	54.094	ENSMICG00000029046	TRMU	97	53.846	Microcebus_murinus
ENSEBUG00000007454	trmu	98	53.079	ENSMOCG00000014641	Trmu	93	53.964	Microtus_ochrogaster
ENSEBUG00000007454	trmu	100	55.331	ENSMMOG00000007229	trmu	95	54.250	Mola_mola
ENSEBUG00000007454	trmu	99	54.680	ENSMODG00000007433	TRMU	94	54.680	Monodelphis_domestica
ENSEBUG00000007454	trmu	100	53.890	ENSMALG00000007721	trmu	94	54.707	Monopterus_albus
ENSEBUG00000007454	trmu	98	54.252	MGP_CAROLIEiJ_G0020134	Trmu	93	55.243	Mus_caroli
ENSEBUG00000007454	trmu	99	53.483	ENSMUSG00000022386	Trmu	95	53.483	Mus_musculus
ENSEBUG00000007454	trmu	99	53.234	MGP_PahariEiJ_G0020139	Trmu	95	53.234	Mus_pahari
ENSEBUG00000007454	trmu	99	53.483	MGP_SPRETEiJ_G0021031	Trmu	95	53.483	Mus_spretus
ENSEBUG00000007454	trmu	99	53.216	ENSMPUG00000002523	TRMU	92	54.592	Mustela_putorius_furo
ENSEBUG00000007454	trmu	98	53.959	ENSNGAG00000005132	Trmu	93	54.476	Nannospalax_galili
ENSEBUG00000007454	trmu	99	55.500	ENSNBRG00000022690	trmu	98	55.500	Neolamprologus_brichardi
ENSEBUG00000007454	trmu	99	53.518	ENSNLEG00000015773	TRMU	94	53.518	Nomascus_leucogenys
ENSEBUG00000007454	trmu	95	47.416	ENSMEUG00000000216	TRMU	98	47.720	Notamacropus_eugenii
ENSEBUG00000007454	trmu	99	54.094	ENSODEG00000014745	TRMU	94	54.569	Octodon_degus
ENSEBUG00000007454	trmu	100	54.755	ENSONIG00000009821	trmu	94	56.489	Oreochromis_niloticus
ENSEBUG00000007454	trmu	91	52.162	ENSOANG00000001891	TRMU	93	52.162	Ornithorhynchus_anatinus
ENSEBUG00000007454	trmu	91	53.533	ENSOCUG00000003664	TRMU	91	53.368	Oryctolagus_cuniculus
ENSEBUG00000007454	trmu	100	54.179	ENSORLG00000019015	trmu	93	55.499	Oryzias_latipes
ENSEBUG00000007454	trmu	100	54.179	ENSORLG00020006830	trmu	93	55.499	Oryzias_latipes_hni
ENSEBUG00000007454	trmu	100	54.179	ENSORLG00015003907	trmu	93	55.499	Oryzias_latipes_hsok
ENSEBUG00000007454	trmu	56	56.444	ENSOMEG00000015541	trmu	81	56.444	Oryzias_melastigma
ENSEBUG00000007454	trmu	99	53.234	ENSOGAG00000008096	TRMU	95	53.234	Otolemur_garnettii
ENSEBUG00000007454	trmu	99	51.754	ENSOARG00000019475	TRMU	92	51.316	Ovis_aries
ENSEBUG00000007454	trmu	99	53.518	ENSPPAG00000033944	TRMU	94	53.518	Pan_paniscus
ENSEBUG00000007454	trmu	99	53.644	ENSPPRG00000004197	TRMU	92	54.962	Panthera_pardus
ENSEBUG00000007454	trmu	81	49.822	ENSPTIG00000014122	TRMU	97	50.373	Panthera_tigris_altaica
ENSEBUG00000007454	trmu	99	53.518	ENSPTRG00000014510	TRMU	94	53.518	Pan_troglodytes
ENSEBUG00000007454	trmu	99	52.513	ENSPANG00000023074	TRMU	91	52.513	Papio_anubis
ENSEBUG00000007454	trmu	99	55.652	ENSPKIG00000002849	trmu	93	56.010	Paramormyrops_kingsleyae
ENSEBUG00000007454	trmu	92	53.784	ENSPSIG00000013020	TRMU	96	53.784	Pelodiscus_sinensis
ENSEBUG00000007454	trmu	98	54.545	ENSPMGG00000004083	trmu	94	55.471	Periophthalmus_magnuspinnatus
ENSEBUG00000007454	trmu	99	53.234	ENSPEMG00000014007	Trmu	95	53.234	Peromyscus_maniculatus_bairdii
ENSEBUG00000007454	trmu	97	54.896	ENSPCIG00000009923	TRMU	91	55.754	Phascolarctos_cinereus
ENSEBUG00000007454	trmu	97	51.632	ENSPFOG00000008197	trmu	85	53.506	Poecilia_formosa
ENSEBUG00000007454	trmu	100	55.043	ENSPLAG00000008414	trmu	94	56.743	Poecilia_latipinna
ENSEBUG00000007454	trmu	100	55.331	ENSPMEG00000004326	trmu	94	56.997	Poecilia_mexicana
ENSEBUG00000007454	trmu	100	55.331	ENSPREG00000007980	trmu	94	56.997	Poecilia_reticulata
ENSEBUG00000007454	trmu	98	53.652	ENSPPYG00000011949	TRMU	93	53.652	Pongo_abelii
ENSEBUG00000007454	trmu	75	64.706	ENSPCAG00000013462	TRMU	93	47.684	Procavia_capensis
ENSEBUG00000007454	trmu	99	54.386	ENSPCOG00000016539	TRMU	96	54.094	Propithecus_coquereli
ENSEBUG00000007454	trmu	99	48.387	ENSPVAG00000013202	TRMU	96	48.387	Pteropus_vampyrus
ENSEBUG00000007454	trmu	98	55.718	ENSPNYG00000005629	trmu	94	56.489	Pundamilia_nyererei
ENSEBUG00000007454	trmu	100	54.179	ENSPNAG00000006339	trmu	91	56.010	Pygocentrus_nattereri
ENSEBUG00000007454	trmu	99	53.731	ENSRNOG00000016465	Trmu	95	53.731	Rattus_norvegicus
ENSEBUG00000007454	trmu	99	52.513	ENSRBIG00000038973	TRMU	94	52.513	Rhinopithecus_bieti
ENSEBUG00000007454	trmu	99	52.764	ENSRROG00000004267	TRMU	94	52.764	Rhinopithecus_roxellana
ENSEBUG00000007454	trmu	95	33.414	YDL033C	SLM3	92	33.414	Saccharomyces_cerevisiae
ENSEBUG00000007454	trmu	99	53.216	ENSSBOG00000030184	TRMU	95	52.605	Saimiri_boliviensis_boliviensis
ENSEBUG00000007454	trmu	89	55.432	ENSSFOG00015020664	trmu	93	55.432	Scleropages_formosus
ENSEBUG00000007454	trmu	99	55.500	ENSSMAG00000019450	trmu	95	55.500	Scophthalmus_maximus
ENSEBUG00000007454	trmu	100	55.620	ENSSDUG00000011913	trmu	94	56.489	Seriola_dumerili
ENSEBUG00000007454	trmu	100	55.620	ENSSLDG00000011684	trmu	94	56.489	Seriola_lalandi_dorsalis
ENSEBUG00000007454	trmu	99	45.885	ENSSPUG00000017123	TRMU	94	45.885	Sphenodon_punctatus
ENSEBUG00000007454	trmu	100	54.179	ENSSPAG00000021875	trmu	93	56.010	Stegastes_partitus
ENSEBUG00000007454	trmu	99	54.094	ENSSSCG00000000007	TRMU	92	54.847	Sus_scrofa
ENSEBUG00000007454	trmu	92	53.887	ENSTGUG00000003663	-	99	53.887	Taeniopygia_guttata
ENSEBUG00000007454	trmu	100	56.772	ENSTRUG00000001231	trmu	96	56.500	Takifugu_rubripes
ENSEBUG00000007454	trmu	99	56.196	ENSTNIG00000010484	trmu	92	56.962	Tetraodon_nigroviridis
ENSEBUG00000007454	trmu	74	46.486	ENSTBEG00000011276	-	77	46.486	Tupaia_belangeri
ENSEBUG00000007454	trmu	99	53.509	ENSTTRG00000004160	TRMU	92	54.592	Tursiops_truncatus
ENSEBUG00000007454	trmu	85	52.542	ENSUAMG00000024825	TRMU	97	52.542	Ursus_americanus
ENSEBUG00000007454	trmu	97	44.776	ENSUMAG00000019079	TRMU	98	49.430	Ursus_maritimus
ENSEBUG00000007454	trmu	63	41.935	ENSVPAG00000000685	-	98	41.935	Vicugna_pacos
ENSEBUG00000007454	trmu	99	52.605	ENSVVUG00000024963	TRMU	95	52.605	Vulpes_vulpes
ENSEBUG00000007454	trmu	99	55.970	ENSXETG00000023304	trmu	93	55.970	Xenopus_tropicalis
ENSEBUG00000007454	trmu	100	53.429	ENSXCOG00000015105	trmu	94	55.051	Xiphophorus_couchianus
ENSEBUG00000007454	trmu	100	55.043	ENSXMAG00000006697	trmu	94	56.489	Xiphophorus_maculatus