EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000008142 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 59790 bases
Position: chrFYBX02010842.1:1328537-1388326
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000012839	zf-CCHC	PF00098.23	4.2e-07	1	1
ENSEBUP00000012831	zf-CCHC	PF00098.23	8e-07	1	1
ENSEBUP00000012839	RRM_5	PF13893.6	1e-11	1	2
ENSEBUP00000012839	RRM_5	PF13893.6	1e-11	2	2
ENSEBUP00000012831	RRM_5	PF13893.6	1.2e-11	1	2
ENSEBUP00000012831	RRM_5	PF13893.6	1.2e-11	2	2
ENSEBUP00000012839	RRM_1	PF00076.22	3.1e-33	1	2
ENSEBUP00000012839	RRM_1	PF00076.22	3.1e-33	2	2
ENSEBUP00000012831	RRM_1	PF00076.22	3.7e-33	1	2
ENSEBUP00000012831	RRM_1	PF00076.22	3.7e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000013407	-	5775	-	ENSEBUP00000012831	384 (aa)	-	-
ENSEBUT00000013415	-	5687	-	ENSEBUP00000012839	364 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000008142's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000008142's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000008142	-	95	76.590	ENSEBUG00000007174	-	97	88.506

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000008142	-	50	54.930	ENSAMXG00000032121	rbm4.2	87	54.930	Astyanax_mexicanus
ENSEBUG00000008142	-	50	61.326	ENSDARG00000036386	rbm4.1	78	60.993	Danio_rerio
ENSEBUG00000008142	-	93	43.429	ENSGACG00000000822	rbm4.1	53	59.116	Gasterosteus_aculeatus
ENSEBUG00000008142	-	76	45.361	ENSLBEG00000019756	-	85	58.156	Labrus_bergylta
ENSEBUG00000008142	-	50	63.536	ENSPKIG00000020805	rbm4.1	86	62.500	Paramormyrops_kingsleyae
ENSEBUG00000008142	-	50	66.484	ENSPMAG00000003433	rbm4.2	84	66.484	Petromyzon_marinus
ENSEBUG00000008142	-	95	40.568	ENSPREG00000003764	-	99	40.701	Poecilia_reticulata
ENSEBUG00000008142	-	50	58.564	ENSTNIG00000004821	rbm4.1	54	58.564	Tetraodon_nigroviridis
ENSEBUG00000008142	-	73	50.558	ENSXETG00000026649	rbm4b	52	63.536	Xenopus_tropicalis
ENSEBUG00000008142	-	95	41.371	ENSXMAG00000008059	-	51	56.742	Xiphophorus_maculatus