EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSEBUG00000008540 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Eptatretus_burgeri
Status
putative
Strand
Plus strand
Length
20093 bases
Position
chrFYBX02009883.1:2657002-2677094
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSEBUP00000013523LSMPF01423.221.1e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSEBUT00000014099-935-ENSEBUP0000001352391 (aa)--
Gene Model
Click here to download ENSEBUG00000008540's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000008540's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSEBUG00000008540lsm58237.333ENSEBUG00000004943lsm37437.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSEBUG00000008540lsm510091.209ENSG00000106355LSM510091.935Homo_sapiens
ENSEBUG00000008540lsm59092.683ENSAPOG00000011743LSM510093.548Acanthochromis_polyacanthus
ENSEBUG00000008540lsm510093.407ENSAPOG00000020779LSM510094.118Acanthochromis_polyacanthus
ENSEBUG00000008540lsm510091.209ENSAMEG00000006700LSM510091.209Ailuropoda_melanoleuca
ENSEBUG00000008540lsm510057.143ENSACIG00000019185lsm510057.143Amphilophus_citrinellus
ENSEBUG00000008540lsm510093.407ENSAOCG00000001636lsm510093.407Amphiprion_ocellaris
ENSEBUG00000008540lsm56893.548ENSAPEG00000008201lsm510093.548Amphiprion_percula
ENSEBUG00000008540lsm510093.407ENSAPEG00000008151lsm510093.407Amphiprion_percula
ENSEBUG00000008540lsm59092.683ENSATEG00000020470lsm510058.242Anabas_testudineus
ENSEBUG00000008540lsm58194.595ENSAPLG00000008171LSM510094.595Anas_platyrhynchos
ENSEBUG00000008540lsm56292.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSEBUG00000008540lsm59986.667ENSANAG00000024192-9486.667Aotus_nancymaae
ENSEBUG00000008540lsm510070.330ENSANAG00000037758-10070.330Aotus_nancymaae
ENSEBUG00000008540lsm510090.110ENSANAG00000034409-10090.110Aotus_nancymaae
ENSEBUG00000008540lsm510092.308ENSACLG00000012891lsm510092.308Astatotilapia_calliptera
ENSEBUG00000008540lsm510079.787ENSAMXG00000035543lsm510079.787Astyanax_mexicanus
ENSEBUG00000008540lsm510091.209ENSBTAG00000002332LSM510091.209Bos_taurus
ENSEBUG00000008540lsm55375.000ENSBTAG00000052014-6375.000Bos_taurus
ENSEBUG00000008540lsm510071.429WBGene00003079lsm-510071.429Caenorhabditis_elegans
ENSEBUG00000008540lsm59880.899ENSCJAG00000005678-9980.899Callithrix_jacchus
ENSEBUG00000008540lsm510091.209ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSEBUG00000008540lsm510090.110ENSCAFG00000019261-10090.110Canis_familiaris
ENSEBUG00000008540lsm55586.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSEBUG00000008540lsm510091.209ENSCAFG00020004946LSM510091.209Canis_lupus_dingo
ENSEBUG00000008540lsm510091.209ENSCHIG00000024539LSM510091.209Capra_hircus
ENSEBUG00000008540lsm58171.622ENSCHIG00000021428-9569.318Capra_hircus
ENSEBUG00000008540lsm510089.011ENSCHIG00000004079-10089.011Capra_hircus
ENSEBUG00000008540lsm510091.209ENSTSYG00000006449-10091.209Carlito_syrichta
ENSEBUG00000008540lsm510068.132ENSTSYG00000036637-10068.132Carlito_syrichta
ENSEBUG00000008540lsm510079.121ENSTSYG00000028728-10079.121Carlito_syrichta
ENSEBUG00000008540lsm510074.725ENSTSYG00000026530-9174.725Carlito_syrichta
ENSEBUG00000008540lsm58286.667ENSCAPG00000006980LSM510086.667Cavia_aperea
ENSEBUG00000008540lsm510091.209ENSCPOG00000036386LSM510091.209Cavia_porcellus
ENSEBUG00000008540lsm510089.011ENSCCAG00000032123-10089.011Cebus_capucinus
ENSEBUG00000008540lsm510090.110ENSCCAG00000000821-10090.110Cebus_capucinus
ENSEBUG00000008540lsm510091.209ENSCCAG00000037808-10091.209Cebus_capucinus
ENSEBUG00000008540lsm510072.527ENSCCAG00000032792-10072.527Cebus_capucinus
ENSEBUG00000008540lsm510062.637ENSCCAG00000037334-10062.637Cebus_capucinus
ENSEBUG00000008540lsm59982.222ENSCATG00000014790-9590.909Cercocebus_atys
ENSEBUG00000008540lsm510091.209ENSCATG00000040218LSM510091.935Cercocebus_atys
ENSEBUG00000008540lsm510091.209ENSCLAG00000000202LSM510091.209Chinchilla_lanigera
ENSEBUG00000008540lsm510079.121ENSCLAG00000005062-9079.121Chinchilla_lanigera
ENSEBUG00000008540lsm58292.000ENSCHOG00000005335LSM59992.000Choloepus_hoffmanni
ENSEBUG00000008540lsm510091.209ENSCPBG00000013685LSM510091.209Chrysemys_picta_bellii
ENSEBUG00000008540lsm59586.047ENSCING00000020625-9786.047Ciona_intestinalis
ENSEBUG00000008540lsm59586.047ENSCSAVG00000001439-9886.047Ciona_savignyi
ENSEBUG00000008540lsm510091.209ENSCANG00000039909LSM510091.935Colobus_angolensis_palliatus
ENSEBUG00000008540lsm510091.209ENSCGRG00001015461Lsm510091.209Cricetulus_griseus_chok1gshd
ENSEBUG00000008540lsm58293.333ENSCGRG00000007677Lsm510093.333Cricetulus_griseus_crigri
ENSEBUG00000008540lsm510057.143ENSCSEG00000015286lsm510057.143Cynoglossus_semilaevis
ENSEBUG00000008540lsm510093.407ENSCVAG00000004262lsm510093.407Cyprinodon_variegatus
ENSEBUG00000008540lsm510092.308ENSDARG00000071573lsm510095.161Danio_rerio
ENSEBUG00000008540lsm59681.609ENSDNOG00000049495-9681.609Dasypus_novemcinctus
ENSEBUG00000008540lsm510091.209ENSDNOG00000034958LSM510091.209Dasypus_novemcinctus
ENSEBUG00000008540lsm510091.209ENSDORG00000009422Lsm510091.209Dipodomys_ordii
ENSEBUG00000008540lsm59580.233FBgn0035675CG66109580.233Drosophila_melanogaster
ENSEBUG00000008540lsm59967.778ENSETEG00000001469-9967.778Echinops_telfairi
ENSEBUG00000008540lsm58174.324ENSETEG00000016074-9874.324Echinops_telfairi
ENSEBUG00000008540lsm510091.209ENSETEG00000018068LSM510091.209Echinops_telfairi
ENSEBUG00000008540lsm59871.910ENSETEG00000010651-9971.910Echinops_telfairi
ENSEBUG00000008540lsm59861.798ENSETEG00000000777-9961.798Echinops_telfairi
ENSEBUG00000008540lsm510091.209ENSEASG00005003500LSM510091.209Equus_asinus_asinus
ENSEBUG00000008540lsm510079.121ENSECAG00000018445LSM510079.121Equus_caballus
ENSEBUG00000008540lsm56387.719ENSEEUG00000004102LSM59587.719Erinaceus_europaeus
ENSEBUG00000008540lsm510094.505ENSELUG00000007792lsm510094.505Esox_lucius
ENSEBUG00000008540lsm510091.209ENSFCAG00000000230LSM510091.209Felis_catus
ENSEBUG00000008540lsm58493.421ENSFALG00000001892LSM59293.421Ficedula_albicollis
ENSEBUG00000008540lsm59064.634ENSFDAG00000008685-9764.634Fukomys_damarensis
ENSEBUG00000008540lsm510091.209ENSFDAG00000008767LSM510091.209Fukomys_damarensis
ENSEBUG00000008540lsm59972.222ENSFHEG00000004011lsm59772.222Fundulus_heteroclitus
ENSEBUG00000008540lsm59993.333ENSGMOG00000018235lsm510093.333Gadus_morhua
ENSEBUG00000008540lsm510090.110ENSGALG00000041625LSM510090.110Gallus_gallus
ENSEBUG00000008540lsm56893.548ENSGAFG00000016824lsm510093.548Gambusia_affinis
ENSEBUG00000008540lsm510094.505ENSGACG00000005528lsm510094.505Gasterosteus_aculeatus
ENSEBUG00000008540lsm510091.209ENSGAGG00000015593LSM510091.209Gopherus_agassizii
ENSEBUG00000008540lsm510091.209ENSGGOG00000043469LSM510091.209Gorilla_gorilla
ENSEBUG00000008540lsm510092.308ENSHBUG00000013773lsm510092.308Haplochromis_burtoni
ENSEBUG00000008540lsm510091.209ENSHGLG00000011765LSM510091.209Heterocephalus_glaber_female
ENSEBUG00000008540lsm510087.912ENSHGLG00100015610LSM510087.912Heterocephalus_glaber_male
ENSEBUG00000008540lsm510056.044ENSHCOG00000008288lsm510056.044Hippocampus_comes
ENSEBUG00000008540lsm510093.407ENSIPUG00000021095LSM510093.407Ictalurus_punctatus
ENSEBUG00000008540lsm510091.209ENSSTOG00000012662LSM510091.209Ictidomys_tridecemlineatus
ENSEBUG00000008540lsm59276.744ENSSTOG00000033886-9776.744Ictidomys_tridecemlineatus
ENSEBUG00000008540lsm510064.835ENSJJAG00000016144-9264.835Jaculus_jaculus
ENSEBUG00000008540lsm510091.209ENSJJAG00000012145-10091.209Jaculus_jaculus
ENSEBUG00000008540lsm58786.076ENSJJAG00000004475-10086.076Jaculus_jaculus
ENSEBUG00000008540lsm510093.407ENSKMAG00000021861lsm510093.407Kryptolebias_marmoratus
ENSEBUG00000008540lsm56282.143ENSLBEG00000017379lsm59282.143Labrus_bergylta
ENSEBUG00000008540lsm59092.683ENSLBEG00000009235LSM56592.683Labrus_bergylta
ENSEBUG00000008540lsm510093.407ENSLACG00000022448LSM510093.407Latimeria_chalumnae
ENSEBUG00000008540lsm510093.407ENSLOCG00000012903lsm510093.407Lepisosteus_oculatus
ENSEBUG00000008540lsm510091.209ENSLAFG00000029579LSM510091.209Loxodonta_africana
ENSEBUG00000008540lsm510064.835ENSLAFG00000027938-10064.835Loxodonta_africana
ENSEBUG00000008540lsm510091.209ENSMFAG00000038508LSM510091.209Macaca_fascicularis
ENSEBUG00000008540lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSEBUG00000008540lsm510089.011ENSMFAG00000030152-10089.011Macaca_fascicularis
ENSEBUG00000008540lsm59983.333ENSMMUG00000039822-10083.333Macaca_mulatta
ENSEBUG00000008540lsm55784.615ENSMMUG00000045129-8184.615Macaca_mulatta
ENSEBUG00000008540lsm510089.011ENSMMUG00000030131-10089.011Macaca_mulatta
ENSEBUG00000008540lsm510089.011ENSMNEG00000037935-10089.011Macaca_nemestrina
ENSEBUG00000008540lsm510091.209ENSMNEG00000015331LSM510091.935Macaca_nemestrina
ENSEBUG00000008540lsm510091.209ENSMLEG00000024945LSM510091.209Mandrillus_leucophaeus
ENSEBUG00000008540lsm59883.146ENSMLEG00000034037-10083.146Mandrillus_leucophaeus
ENSEBUG00000008540lsm510090.110ENSMAMG00000012869lsm510090.110Mastacembelus_armatus
ENSEBUG00000008540lsm510092.308ENSMZEG00005019554lsm510092.308Maylandia_zebra
ENSEBUG00000008540lsm510090.110ENSMGAG00000012117LSM510090.110Meleagris_gallopavo
ENSEBUG00000008540lsm510090.110ENSMAUG00000008132-10090.110Mesocricetus_auratus
ENSEBUG00000008540lsm510091.209ENSMAUG00000012222Lsm510091.209Mesocricetus_auratus
ENSEBUG00000008540lsm59970.000ENSMICG00000033928-9670.000Microcebus_murinus
ENSEBUG00000008540lsm510091.209ENSMICG00000005353LSM510091.209Microcebus_murinus
ENSEBUG00000008540lsm510091.209ENSMOCG00000012018Lsm510091.209Microtus_ochrogaster
ENSEBUG00000008540lsm58494.737ENSMMOG00000004026lsm58794.737Mola_mola
ENSEBUG00000008540lsm56891.935ENSMODG00000013274-10091.935Monodelphis_domestica
ENSEBUG00000008540lsm56893.548ENSMALG00000010343lsm510093.548Monopterus_albus
ENSEBUG00000008540lsm510091.209MGP_CAROLIEiJ_G0028421Lsm59897.561Mus_caroli
ENSEBUG00000008540lsm510091.209ENSMUSG00000091625Lsm59897.561Mus_musculus
ENSEBUG00000008540lsm510091.209MGP_PahariEiJ_G0022171Lsm59897.561Mus_pahari
ENSEBUG00000008540lsm510091.209MGP_SPRETEiJ_G0029423Lsm59897.561Mus_spretus
ENSEBUG00000008540lsm510091.209ENSMLUG00000017028LSM510091.209Myotis_lucifugus
ENSEBUG00000008540lsm510091.209ENSNGAG00000024142Lsm510091.209Nannospalax_galili
ENSEBUG00000008540lsm59972.222ENSNGAG00000022569-9672.222Nannospalax_galili
ENSEBUG00000008540lsm510080.645ENSNGAG00000017707-10080.645Nannospalax_galili
ENSEBUG00000008540lsm56392.982ENSNBRG00000011386lsm57692.982Neolamprologus_brichardi
ENSEBUG00000008540lsm55487.755ENSNBRG00000009964LSM59887.755Neolamprologus_brichardi
ENSEBUG00000008540lsm510091.209ENSNLEG00000015268LSM510091.209Nomascus_leucogenys
ENSEBUG00000008540lsm58293.333ENSOPRG00000002443LSM510093.333Ochotona_princeps
ENSEBUG00000008540lsm510091.209ENSODEG00000008258-10091.209Octodon_degus
ENSEBUG00000008540lsm510091.209ENSODEG00000019072-10091.209Octodon_degus
ENSEBUG00000008540lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSEBUG00000008540lsm510091.209ENSOCUG00000029043LSM510091.209Oryctolagus_cuniculus
ENSEBUG00000008540lsm510093.407ENSORLG00000027725lsm55893.407Oryzias_latipes
ENSEBUG00000008540lsm59688.506ENSORLG00020003019lsm58392.500Oryzias_latipes_hni
ENSEBUG00000008540lsm510093.407ENSORLG00015003338lsm510093.407Oryzias_latipes_hsok
ENSEBUG00000008540lsm510092.308ENSOMEG00000001078lsm510092.308Oryzias_melastigma
ENSEBUG00000008540lsm510091.209ENSOGAG00000013892LSM510091.209Otolemur_garnettii
ENSEBUG00000008540lsm510091.209ENSOARG00000006944LSM510091.209Ovis_aries
ENSEBUG00000008540lsm510091.209ENSPPAG00000003697-10091.209Pan_paniscus
ENSEBUG00000008540lsm510091.209ENSPPRG00000002550LSM510091.209Panthera_pardus
ENSEBUG00000008540lsm510091.209ENSPTIG00000015604LSM510091.209Panthera_tigris_altaica
ENSEBUG00000008540lsm510091.209ENSPTRG00000019057LSM510091.209Pan_troglodytes
ENSEBUG00000008540lsm510074.725ENSPTRG00000049488-10079.121Pan_troglodytes
ENSEBUG00000008540lsm510091.209ENSPANG00000032179-10091.209Papio_anubis
ENSEBUG00000008540lsm59983.333ENSPANG00000032538-10083.333Papio_anubis
ENSEBUG00000008540lsm510087.912ENSPANG00000033477-10087.912Papio_anubis
ENSEBUG00000008540lsm510093.407ENSPKIG00000011910lsm510093.407Paramormyrops_kingsleyae
ENSEBUG00000008540lsm58194.595ENSPSIG00000014796LSM510094.595Pelodiscus_sinensis
ENSEBUG00000008540lsm56893.548ENSPMGG00000011699lsm510093.548Periophthalmus_magnuspinnatus
ENSEBUG00000008540lsm55291.489ENSPEMG00000019994-8091.489Peromyscus_maniculatus_bairdii
ENSEBUG00000008540lsm510064.835ENSPEMG00000022375-10064.835Peromyscus_maniculatus_bairdii
ENSEBUG00000008540lsm510093.407ENSPFOG00000001433lsm510093.407Poecilia_formosa
ENSEBUG00000008540lsm510093.407ENSPLAG00000009665lsm510093.407Poecilia_latipinna
ENSEBUG00000008540lsm510093.407ENSPMEG00000022265lsm510093.407Poecilia_mexicana
ENSEBUG00000008540lsm56893.548ENSPREG00000022452lsm510093.548Poecilia_reticulata
ENSEBUG00000008540lsm510087.912ENSPPYG00000017661LSM510087.912Pongo_abelii
ENSEBUG00000008540lsm58992.593ENSPCAG00000013740LSM510092.593Procavia_capensis
ENSEBUG00000008540lsm510091.209ENSPVAG00000009786LSM510091.209Pteropus_vampyrus
ENSEBUG00000008540lsm510092.308ENSPNYG00000022236lsm510092.308Pundamilia_nyererei
ENSEBUG00000008540lsm510093.407ENSPNAG00000001887lsm510093.407Pygocentrus_nattereri
ENSEBUG00000008540lsm510088.043ENSRNOG00000027305AABR07065089.110088.043Rattus_norvegicus
ENSEBUG00000008540lsm510091.209ENSRNOG00000042126Lsm510091.209Rattus_norvegicus
ENSEBUG00000008540lsm510091.209ENSRBIG00000030714-10091.209Rhinopithecus_bieti
ENSEBUG00000008540lsm510091.209ENSRBIG00000030340-10091.209Rhinopithecus_bieti
ENSEBUG00000008540lsm510090.110ENSRBIG00000024431-10090.110Rhinopithecus_bieti
ENSEBUG00000008540lsm510091.209ENSRBIG00000027803-10091.935Rhinopithecus_bieti
ENSEBUG00000008540lsm510091.209ENSRROG00000023884-10091.209Rhinopithecus_roxellana
ENSEBUG00000008540lsm510091.209ENSRROG00000004655-10091.209Rhinopithecus_roxellana
ENSEBUG00000008540lsm510091.209ENSRROG00000042782-10091.935Rhinopithecus_roxellana
ENSEBUG00000008540lsm58543.902YER146W-8843.902Saccharomyces_cerevisiae
ENSEBUG00000008540lsm510069.231ENSSBOG00000034794-10069.231Saimiri_boliviensis_boliviensis
ENSEBUG00000008540lsm510089.011ENSSBOG00000019124-10089.011Saimiri_boliviensis_boliviensis
ENSEBUG00000008540lsm510091.209ENSSBOG00000012312LSM510091.209Saimiri_boliviensis_boliviensis
ENSEBUG00000008540lsm510093.407ENSSFOG00015010099lsm510093.407Scleropages_formosus
ENSEBUG00000008540lsm510059.341ENSSMAG00000007895lsm510059.341Scophthalmus_maximus
ENSEBUG00000008540lsm56893.548ENSSDUG00000010762lsm510093.548Seriola_dumerili
ENSEBUG00000008540lsm510092.308ENSSLDG00000025242lsm510092.308Seriola_lalandi_dorsalis
ENSEBUG00000008540lsm58575.325ENSSLDG00000008014-9275.325Seriola_lalandi_dorsalis
ENSEBUG00000008540lsm510065.934ENSSARG00000003330LSM510065.934Sorex_araneus
ENSEBUG00000008540lsm510089.011ENSSPUG00000002690LSM510090.323Sphenodon_punctatus
ENSEBUG00000008540lsm510058.242ENSSPAG00000005435lsm510058.242Stegastes_partitus
ENSEBUG00000008540lsm57679.710ENSSSCG00000029661-9679.710Sus_scrofa
ENSEBUG00000008540lsm510091.209ENSSSCG00000026064-10091.209Sus_scrofa
ENSEBUG00000008540lsm510089.011ENSTGUG00000017539LSM510089.011Taeniopygia_guttata
ENSEBUG00000008540lsm58983.721ENSTRUG00000017749lsm56783.721Takifugu_rubripes
ENSEBUG00000008540lsm59594.186ENSTNIG00000008695lsm59894.186Tetraodon_nigroviridis
ENSEBUG00000008540lsm510091.209ENSTBEG00000004876LSM510091.209Tupaia_belangeri
ENSEBUG00000008540lsm510091.209ENSTTRG00000004237LSM510091.209Tursiops_truncatus
ENSEBUG00000008540lsm55784.615ENSUAMG00000009786LSM56884.615Ursus_americanus
ENSEBUG00000008540lsm510090.110ENSUMAG00000002625LSM56590.110Ursus_maritimus
ENSEBUG00000008540lsm510091.209ENSVPAG00000009985LSM510091.209Vicugna_pacos
ENSEBUG00000008540lsm510091.209ENSVVUG00000021311LSM510091.209Vulpes_vulpes
ENSEBUG00000008540lsm59091.463ENSXETG00000026465lsm510091.463Xenopus_tropicalis
ENSEBUG00000008540lsm56893.548ENSXCOG00000015348lsm510093.548Xiphophorus_couchianus
ENSEBUG00000008540lsm510093.407ENSXMAG00000029988lsm510093.407Xiphophorus_maculatus

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