EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSEBUG00000008647 (Gene tree)
Gene ID
-
Gene Symbol
csde1
Alias
fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name
cold shock domain containing E1%2C RNA-binding
Gene Type
protein_coding
Species
Eptatretus_burgeri
Status
putative
Strand
Plus strand
Length
64260 bases
Position
chrFYBX02010648.1:1581817-1646076
Accession
ZDB-GENE-030131-8623
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSEBUP00000013735CSDPF00313.223.4e-6915
ENSEBUP00000013735CSDPF00313.223.4e-6925
ENSEBUP00000013735CSDPF00313.223.4e-6935
ENSEBUP00000013735CSDPF00313.223.4e-6945
ENSEBUP00000013735CSDPF00313.223.4e-6955
ENSEBUP00000013781CSDPF00313.228.7e-6915
ENSEBUP00000013781CSDPF00313.228.7e-6925
ENSEBUP00000013781CSDPF00313.228.7e-6935
ENSEBUP00000013781CSDPF00313.228.7e-6945
ENSEBUP00000013781CSDPF00313.228.7e-6955
ENSEBUP00000013838CSDPF00313.229.2e-6915
ENSEBUP00000013838CSDPF00313.229.2e-6925
ENSEBUP00000013838CSDPF00313.229.2e-6935
ENSEBUP00000013838CSDPF00313.229.2e-6945
ENSEBUP00000013838CSDPF00313.229.2e-6955
ENSEBUP00000013705CSDPF00313.221.6e-6815
ENSEBUP00000013705CSDPF00313.221.6e-6825
ENSEBUP00000013705CSDPF00313.221.6e-6835
ENSEBUP00000013705CSDPF00313.221.6e-6845
ENSEBUP00000013705CSDPF00313.221.6e-6855
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSEBUT00000014311-7967-ENSEBUP00000013735864 (aa)--
ENSEBUT00000014281-8045-ENSEBUP00000013705890 (aa)--
ENSEBUT00000014356-7659-ENSEBUP00000013781834 (aa)--
ENSEBUT00000014414-7732-ENSEBUP00000013838842 (aa)--
Gene Model
Click here to download ENSEBUG00000008647's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000008647's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSEBUG00000008647csde19954.286ENSG00000009307CSDE19662.879Homo_sapiens
ENSEBUG00000008647csde19952.392ENSAPOG00000015538csde19953.791Acanthochromis_polyacanthus
ENSEBUG00000008647csde19951.671ENSAMEG00000017129CSDE19453.325Ailuropoda_melanoleuca
ENSEBUG00000008647csde19354.478ENSACIG00000015175csde110057.520Amphilophus_citrinellus
ENSEBUG00000008647csde19952.392ENSAOCG00000011510csde19953.571Amphiprion_ocellaris
ENSEBUG00000008647csde19953.580ENSAPEG00000007194csde19954.031Amphiprion_percula
ENSEBUG00000008647csde19951.551ENSATEG00000003864csde19953.202Anabas_testudineus
ENSEBUG00000008647csde19952.267ENSAPLG00000008797CSDE19953.941Anas_platyrhynchos
ENSEBUG00000008647csde19953.810ENSACAG00000003120CSDE19955.528Anolis_carolinensis
ENSEBUG00000008647csde19954.167ENSANAG00000024665CSDE18763.670Aotus_nancymaae
ENSEBUG00000008647csde17545.000ENSANAG00000028396-9348.980Aotus_nancymaae
ENSEBUG00000008647csde19953.222ENSACLG00000013296csde19954.926Astatotilapia_calliptera
ENSEBUG00000008647csde19952.455ENSAMXG00000007436csde19954.141Astyanax_mexicanus
ENSEBUG00000008647csde19954.286ENSBTAG00000000678CSDE19954.433Bos_taurus
ENSEBUG00000008647csde19954.286ENSCJAG00000012565CSDE19456.020Callithrix_jacchus
ENSEBUG00000008647csde19852.721ENSCAFG00000009618CSDE19454.432Canis_familiaris
ENSEBUG00000008647csde19952.625ENSCAFG00020000481CSDE19954.310Canis_lupus_dingo
ENSEBUG00000008647csde19954.157ENSCHIG00000017250CSDE19954.300Capra_hircus
ENSEBUG00000008647csde19953.810ENSTSYG00000003747CSDE19955.528Carlito_syrichta
ENSEBUG00000008647csde19949.405ENSCAPG00000015128CSDE19949.405Cavia_aperea
ENSEBUG00000008647csde19951.971ENSCPOG00000040388CSDE19953.875Cavia_porcellus
ENSEBUG00000008647csde19954.286ENSCCAG00000036794CSDE19956.020Cebus_capucinus
ENSEBUG00000008647csde19440.217ENSCCAG00000033677-9942.627Cebus_capucinus
ENSEBUG00000008647csde19938.843ENSCCAG00000030878-9040.830Cebus_capucinus
ENSEBUG00000008647csde19954.286ENSCATG00000036962CSDE19754.186Cercocebus_atys
ENSEBUG00000008647csde19954.167ENSCLAG00000006618CSDE19955.897Chinchilla_lanigera
ENSEBUG00000008647csde19954.286ENSCSAG00000001658CSDE19456.020Chlorocebus_sabaeus
ENSEBUG00000008647csde19157.237ENSCHOG00000000918CSDE17558.683Choloepus_hoffmanni
ENSEBUG00000008647csde19953.810ENSCPBG00000016547CSDE19955.528Chrysemys_picta_bellii
ENSEBUG00000008647csde19841.044ENSCING00000014465-9642.176Ciona_intestinalis
ENSEBUG00000008647csde19740.071ENSCSAVG00000008100-9941.169Ciona_savignyi
ENSEBUG00000008647csde19954.286ENSCANG00000035096CSDE19754.186Colobus_angolensis_palliatus
ENSEBUG00000008647csde19752.470ENSCANG00000031069-9562.172Colobus_angolensis_palliatus
ENSEBUG00000008647csde19943.489ENSCGRG00001014011-9944.883Cricetulus_griseus_chok1gshd
ENSEBUG00000008647csde19953.810ENSCGRG00001016833-9955.528Cricetulus_griseus_chok1gshd
ENSEBUG00000008647csde19752.273ENSCGRG00000002225-9955.240Cricetulus_griseus_crigri
ENSEBUG00000008647csde19945.455ENSCGRG00000005831-9945.455Cricetulus_griseus_crigri
ENSEBUG00000008647csde19952.859ENSCSEG00000002620csde19954.310Cynoglossus_semilaevis
ENSEBUG00000008647csde19953.580ENSCVAG00000001344csde19955.025Cyprinodon_variegatus
ENSEBUG00000008647csde19955.251ENSDARG00000074758csde19957.020Danio_rerio
ENSEBUG00000008647csde16040.780ENSDNOG00000034464-9940.780Dasypus_novemcinctus
ENSEBUG00000008647csde19952.801ENSDNOG00000010287-9254.490Dasypus_novemcinctus
ENSEBUG00000008647csde19954.048ENSDORG00000011609Csde19957.037Dipodomys_ordii
ENSEBUG00000008647csde19743.931FBgn0263352Unr7745.892Drosophila_melanogaster
ENSEBUG00000008647csde19940.931ENSETEG00000013678-9942.241Echinops_telfairi
ENSEBUG00000008647csde19740.252ENSETEG00000007109-9941.967Echinops_telfairi
ENSEBUG00000008647csde19960.169ENSETEG00000002491-7360.169Echinops_telfairi
ENSEBUG00000008647csde19147.210ENSETEG00000006280-9949.034Echinops_telfairi
ENSEBUG00000008647csde19954.405ENSEASG00005006284CSDE19956.143Equus_asinus_asinus
ENSEBUG00000008647csde19954.405ENSECAG00000020885CSDE19956.143Equus_caballus
ENSEBUG00000008647csde19356.701ENSEEUG00000006286CSDE16856.701Erinaceus_europaeus
ENSEBUG00000008647csde19952.083ENSELUG00000015507csde19952.826Esox_lucius
ENSEBUG00000008647csde19954.167ENSFCAG00000029266CSDE19954.310Felis_catus
ENSEBUG00000008647csde19953.929ENSFALG00000003407CSDE19955.651Ficedula_albicollis
ENSEBUG00000008647csde19953.929ENSFDAG00000007882CSDE19957.037Fukomys_damarensis
ENSEBUG00000008647csde19953.580ENSFHEG00000010799csde19955.049Fundulus_heteroclitus
ENSEBUG00000008647csde19953.699ENSGMOG00000012731csde19955.419Gadus_morhua
ENSEBUG00000008647csde19953.763ENSGALG00000002139CSDE19955.487Gallus_gallus
ENSEBUG00000008647csde19650.617ENSGAFG00000005241csde19552.489Gambusia_affinis
ENSEBUG00000008647csde19954.057ENSGACG00000004544csde19955.788Gasterosteus_aculeatus
ENSEBUG00000008647csde19954.048ENSGAGG00000017685CSDE19955.774Gopherus_agassizii
ENSEBUG00000008647csde19954.286ENSGGOG00000002164CSDE19954.433Gorilla_gorilla
ENSEBUG00000008647csde19952.745ENSHBUG00000020315csde19953.202Haplochromis_burtoni
ENSEBUG00000008647csde19946.411ENSHGLG00000007471-9847.901Heterocephalus_glaber_female
ENSEBUG00000008647csde19948.214ENSHGLG00000009620-9950.123Heterocephalus_glaber_female
ENSEBUG00000008647csde19946.007ENSHGLG00000019549-9947.355Heterocephalus_glaber_female
ENSEBUG00000008647csde19947.494ENSHGLG00000003829-9949.015Heterocephalus_glaber_female
ENSEBUG00000008647csde19847.934ENSHGLG00000010039-9950.655Heterocephalus_glaber_female
ENSEBUG00000008647csde19748.930ENSHGLG00000008555-9950.815Heterocephalus_glaber_female
ENSEBUG00000008647csde19942.857ENSHGLG00000000650-9944.226Heterocephalus_glaber_female
ENSEBUG00000008647csde19946.081ENSHGLG00100002245-9947.549Heterocephalus_glaber_male
ENSEBUG00000008647csde19942.857ENSHGLG00100001846-9845.873Heterocephalus_glaber_male
ENSEBUG00000008647csde19444.949ENSHGLG00100004195-10046.475Heterocephalus_glaber_male
ENSEBUG00000008647csde19945.813ENSHGLG00100007287-9847.284Heterocephalus_glaber_male
ENSEBUG00000008647csde19942.769ENSHGLG00100004833-9945.197Heterocephalus_glaber_male
ENSEBUG00000008647csde19747.141ENSHGLG00100012072-9849.114Heterocephalus_glaber_male
ENSEBUG00000008647csde19847.314ENSHGLG00100006910-9950.000Heterocephalus_glaber_male
ENSEBUG00000008647csde19953.929ENSHGLG00100019438-9955.651Heterocephalus_glaber_male
ENSEBUG00000008647csde19953.938ENSHCOG00000004158csde19953.941Hippocampus_comes
ENSEBUG00000008647csde19951.981ENSIPUG00000000355csde19953.656Ictalurus_punctatus
ENSEBUG00000008647csde19944.917ENSSTOG00000030994-9946.341Ictidomys_tridecemlineatus
ENSEBUG00000008647csde19252.055ENSSTOG00000032722-9852.055Ictidomys_tridecemlineatus
ENSEBUG00000008647csde19953.929ENSJJAG00000019571Csde19957.037Jaculus_jaculus
ENSEBUG00000008647csde19953.452ENSKMAG00000005685csde19954.890Kryptolebias_marmoratus
ENSEBUG00000008647csde19952.810ENSLBEG00000014770csde19953.941Labrus_bergylta
ENSEBUG00000008647csde19952.669ENSLACG00000018452CSDE19454.390Latimeria_chalumnae
ENSEBUG00000008647csde19955.012ENSLOCG00000010413csde19356.773Lepisosteus_oculatus
ENSEBUG00000008647csde19952.506ENSLAFG00000007150CSDE19554.187Loxodonta_africana
ENSEBUG00000008647csde19954.286ENSMFAG00000003674CSDE19954.433Macaca_fascicularis
ENSEBUG00000008647csde19954.286ENSMMUG00000001974CSDE19954.433Macaca_mulatta
ENSEBUG00000008647csde19954.286ENSMNEG00000045247CSDE19754.186Macaca_nemestrina
ENSEBUG00000008647csde19954.286ENSMLEG00000038673CSDE19456.020Mandrillus_leucophaeus
ENSEBUG00000008647csde19953.559ENSMAMG00000008821csde19954.803Mastacembelus_armatus
ENSEBUG00000008647csde19953.222ENSMZEG00005021675csde19953.202Maylandia_zebra
ENSEBUG00000008647csde19953.763ENSMGAG00000016381CSDE19955.487Meleagris_gallopavo
ENSEBUG00000008647csde19953.810ENSMAUG00000014031Csde19956.889Mesocricetus_auratus
ENSEBUG00000008647csde19954.221ENSMICG00000002050CSDE19855.361Microcebus_murinus
ENSEBUG00000008647csde19954.048ENSMOCG00000018960Csde19955.774Microtus_ochrogaster
ENSEBUG00000008647csde19952.387ENSMMOG00000015075csde19954.064Mola_mola
ENSEBUG00000008647csde19954.286ENSMODG00000004685CSDE19956.020Monodelphis_domestica
ENSEBUG00000008647csde19952.387ENSMALG00000007132csde19954.064Monopterus_albus
ENSEBUG00000008647csde19953.690MGP_CAROLIEiJ_G0025444Csde19266.667Mus_caroli
ENSEBUG00000008647csde19953.929ENSMUSG00000068823Csde19761.224Mus_musculus
ENSEBUG00000008647csde19953.929MGP_PahariEiJ_G0026888Csde19266.667Mus_pahari
ENSEBUG00000008647csde19953.929MGP_SPRETEiJ_G0026394Csde19266.667Mus_spretus
ENSEBUG00000008647csde19854.282ENSMPUG00000005753CSDE19956.040Mustela_putorius_furo
ENSEBUG00000008647csde19952.387ENSMLUG00000005681CSDE19453.941Myotis_lucifugus
ENSEBUG00000008647csde19243.575ENSNGAG00000012599-9943.575Nannospalax_galili
ENSEBUG00000008647csde19953.690ENSNGAG00000021929Csde19956.741Nannospalax_galili
ENSEBUG00000008647csde19951.551ENSNBRG00000020808csde19953.202Neolamprologus_brichardi
ENSEBUG00000008647csde19954.286ENSNLEG00000004842CSDE18763.670Nomascus_leucogenys
ENSEBUG00000008647csde19855.708ENSMEUG00000002677CSDE19558.003Notamacropus_eugenii
ENSEBUG00000008647csde19855.435ENSOPRG00000005002CSDE17555.435Ochotona_princeps
ENSEBUG00000008647csde19840.741ENSODEG00000005979-9740.741Octodon_degus
ENSEBUG00000008647csde19954.048ENSODEG00000007383-9957.185Octodon_degus
ENSEBUG00000008647csde19952.042ENSONIG00000009309csde19953.670Oreochromis_niloticus
ENSEBUG00000008647csde19954.254ENSOANG00000003346-8554.254Ornithorhynchus_anatinus
ENSEBUG00000008647csde19954.167ENSOCUG00000016438CSDE19455.897Oryctolagus_cuniculus
ENSEBUG00000008647csde19952.509ENSORLG00000000707csde19954.152Oryzias_latipes
ENSEBUG00000008647csde19953.461ENSORLG00020005148csde19953.911Oryzias_latipes_hni
ENSEBUG00000008647csde19953.699ENSORLG00015019415csde19954.152Oryzias_latipes_hsok
ENSEBUG00000008647csde19953.222ENSOMEG00000015656csde19953.791Oryzias_melastigma
ENSEBUG00000008647csde19952.745ENSOGAG00000012127CSDE19454.433Otolemur_garnettii
ENSEBUG00000008647csde19952.745ENSOARG00000020034CSDE19454.433Ovis_aries
ENSEBUG00000008647csde19954.286ENSPPAG00000025861CSDE19954.433Pan_paniscus
ENSEBUG00000008647csde19954.167ENSPPRG00000006747CSDE19455.897Panthera_pardus
ENSEBUG00000008647csde19954.167ENSPTIG00000015468CSDE19955.897Panthera_tigris_altaica
ENSEBUG00000008647csde19954.286ENSPTRG00000033721CSDE19956.020Pan_troglodytes
ENSEBUG00000008647csde19954.286ENSPANG00000018873CSDE19954.433Papio_anubis
ENSEBUG00000008647csde19951.909ENSPKIG00000009459csde19953.571Paramormyrops_kingsleyae
ENSEBUG00000008647csde19353.768ENSPSIG00000003823CSDE19656.774Pelodiscus_sinensis
ENSEBUG00000008647csde19952.443ENSPMGG00000000772csde19954.121Periophthalmus_magnuspinnatus
ENSEBUG00000008647csde19954.048ENSPEMG00000020357-9957.037Peromyscus_maniculatus_bairdii
ENSEBUG00000008647csde19954.405ENSPCIG00000022587CSDE19956.143Phascolarctos_cinereus
ENSEBUG00000008647csde19754.018ENSPFOG00000012664csde19955.692Poecilia_formosa
ENSEBUG00000008647csde19850.210ENSPLAG00000017680csde19750.210Poecilia_latipinna
ENSEBUG00000008647csde19750.283ENSPMEG00000005094csde19850.283Poecilia_mexicana
ENSEBUG00000008647csde19954.296ENSPREG00000011631csde19953.791Poecilia_reticulata
ENSEBUG00000008647csde19954.405ENSPPYG00000000996CSDE19956.143Pongo_abelii
ENSEBUG00000008647csde19956.044ENSPCAG00000014368CSDE18957.321Procavia_capensis
ENSEBUG00000008647csde19954.340ENSPCOG00000017893CSDE19956.074Propithecus_coquereli
ENSEBUG00000008647csde17753.731ENSPCOG00000008223-9353.261Propithecus_coquereli
ENSEBUG00000008647csde19352.746ENSPVAG00000008225CSDE18754.557Pteropus_vampyrus
ENSEBUG00000008647csde19952.745ENSPNYG00000013745csde19953.202Pundamilia_nyererei
ENSEBUG00000008647csde19954.241ENSPNAG00000001958csde19954.131Pygocentrus_nattereri
ENSEBUG00000008647csde19954.048ENSRNOG00000061058Csde19955.774Rattus_norvegicus
ENSEBUG00000008647csde19950.119ENSRBIG00000038966-9452.683Rhinopithecus_bieti
ENSEBUG00000008647csde19951.786ENSRBIG00000038088-9954.599Rhinopithecus_bieti
ENSEBUG00000008647csde19954.286ENSRROG00000043101CSDE19754.060Rhinopithecus_roxellana
ENSEBUG00000008647csde19954.286ENSSBOG00000035592CSDE19456.020Saimiri_boliviensis_boliviensis
ENSEBUG00000008647csde19952.864ENSSHAG00000009831CSDE19954.557Sarcophilus_harrisii
ENSEBUG00000008647csde19953.516ENSSFOG00015007498csde19955.228Scleropages_formosus
ENSEBUG00000008647csde19952.797ENSSMAG00000007203csde19954.447Scophthalmus_maximus
ENSEBUG00000008647csde19953.442ENSSDUG00000015380csde19954.680Seriola_dumerili
ENSEBUG00000008647csde19954.654ENSSLDG00000008819csde19956.404Seriola_lalandi_dorsalis
ENSEBUG00000008647csde19952.387ENSSARG00000000738CSDE19454.064Sorex_araneus
ENSEBUG00000008647csde19954.048ENSSPUG00000008714CSDE19955.774Sphenodon_punctatus
ENSEBUG00000008647csde19954.057ENSSPAG00000000716csde19954.064Stegastes_partitus
ENSEBUG00000008647csde19954.286ENSSSCG00000006752CSDE19954.433Sus_scrofa
ENSEBUG00000008647csde19953.563ENSTGUG00000000972CSDE19955.270Taeniopygia_guttata
ENSEBUG00000008647csde19952.148ENSTRUG00000007996csde19953.818Takifugu_rubripes
ENSEBUG00000008647csde19356.180ENSTNIG00000010878csde110056.180Tetraodon_nigroviridis
ENSEBUG00000008647csde17060.759ENSTBEG00000011880-5560.759Tupaia_belangeri
ENSEBUG00000008647csde19952.506ENSTTRG00000015583CSDE19454.187Tursiops_truncatus
ENSEBUG00000008647csde19249.353ENSUAMG00000024289-9951.271Ursus_americanus
ENSEBUG00000008647csde18657.402ENSUAMG00000021779-9762.295Ursus_americanus
ENSEBUG00000008647csde19750.766ENSUMAG00000011714-9753.953Ursus_maritimus
ENSEBUG00000008647csde19948.568ENSUMAG00000009720-9750.123Ursus_maritimus
ENSEBUG00000008647csde19856.039ENSVPAG00000000749CSDE17856.039Vicugna_pacos
ENSEBUG00000008647csde19453.625ENSVVUG00000009890CSDE19455.603Vulpes_vulpes
ENSEBUG00000008647csde19954.396ENSXETG00000021448csde19955.583Xenopus_tropicalis
ENSEBUG00000008647csde19663.636ENSXCOG00000000035csde19963.636Xiphophorus_couchianus
ENSEBUG00000008647csde19953.699ENSXMAG00000009080csde19953.892Xiphophorus_maculatus

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