EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSEBUG00000009018 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Eptatretus_burgeri
Status
putative
Strand
Minus strand
Length
114983 bases
Position
chrFYBX02010297.1:705470-820452
Accession
ZDB-GENE-030131-3275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSEBUP00000014322CPSF73-100_CPF11718.83.5e-4311
ENSEBUP00000014322Beta-CaspPF10996.81.3e-3311
ENSEBUP00000014322Lactamase_BPF00753.277.5e-1811
ENSEBUP00000014322RMMBLPF07521.121.6e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSEBUT00000014897-3902-ENSEBUP00000014322711 (aa)--
Gene Model
Click here to download ENSEBUG00000009018's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000009018's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSEBUG00000009018cpsf36341.722ENSEBUG00000003190-8841.722
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSEBUG00000009018cpsf39878.797ENSG00000119203CPSF310092.647Homo_sapiens
ENSEBUG00000009018cpsf37486.667ENSAPOG00000012241CPSF39386.667Acanthochromis_polyacanthus
ENSEBUG00000009018cpsf39975.282ENSAPOG00000022087cpsf39975.282Acanthochromis_polyacanthus
ENSEBUG00000009018cpsf39878.940ENSAMEG00000008493CPSF39978.797Ailuropoda_melanoleuca
ENSEBUG00000009018cpsf39074.922ENSACIG00000009846cpsf39774.922Amphilophus_citrinellus
ENSEBUG00000009018cpsf39075.663ENSACIG00000023663CPSF39875.195Amphilophus_citrinellus
ENSEBUG00000009018cpsf39976.197ENSAOCG00000010077CPSF39975.775Amphiprion_ocellaris
ENSEBUG00000009018cpsf39975.282ENSAOCG00000022056cpsf39584.448Amphiprion_ocellaris
ENSEBUG00000009018cpsf39975.141ENSAPEG00000019526cpsf39979.027Amphiprion_percula
ENSEBUG00000009018cpsf39976.197ENSAPEG00000021167CPSF39779.666Amphiprion_percula
ENSEBUG00000009018cpsf39974.612ENSATEG00000014525CPSF39974.189Anabas_testudineus
ENSEBUG00000009018cpsf39974.471ENSATEG00000003959cpsf39974.471Anabas_testudineus
ENSEBUG00000009018cpsf39778.696ENSAPLG00000006941CPSF39878.551Anas_platyrhynchos
ENSEBUG00000009018cpsf39277.182ENSACAG00000001759CPSF39977.029Anolis_carolinensis
ENSEBUG00000009018cpsf39873.209ENSANAG00000031254CPSF39973.324Aotus_nancymaae
ENSEBUG00000009018cpsf39676.462ENSACLG00000014484cpsf39976.462Astatotilapia_calliptera
ENSEBUG00000009018cpsf39175.193ENSACLG00000018846CPSF39974.730Astatotilapia_calliptera
ENSEBUG00000009018cpsf39975.493ENSAMXG00000004786cpsf39975.070Astyanax_mexicanus
ENSEBUG00000009018cpsf39878.940ENSBTAG00000019735CPSF39978.797Bos_taurus
ENSEBUG00000009018cpsf38360.265WBGene00013460cpsf-38660.132Caenorhabditis_elegans
ENSEBUG00000009018cpsf39878.797ENSCJAG00000006276CPSF39978.653Callithrix_jacchus
ENSEBUG00000009018cpsf39878.940ENSCAFG00000003375CPSF39578.797Canis_familiaris
ENSEBUG00000009018cpsf38387.669ENSCAFG00020026799CPSF39687.669Canis_lupus_dingo
ENSEBUG00000009018cpsf39878.940ENSCHIG00000013973CPSF39978.797Capra_hircus
ENSEBUG00000009018cpsf39878.797ENSTSYG00000002967CPSF39978.653Carlito_syrichta
ENSEBUG00000009018cpsf39678.540ENSCAPG00000013851CPSF39978.394Cavia_aperea
ENSEBUG00000009018cpsf39878.653ENSCPOG00000011299CPSF39978.510Cavia_porcellus
ENSEBUG00000009018cpsf39878.797ENSCCAG00000036730CPSF39978.653Cebus_capucinus
ENSEBUG00000009018cpsf39877.110ENSCATG00000014770CPSF39987.847Cercocebus_atys
ENSEBUG00000009018cpsf39878.510ENSCLAG00000002727CPSF39978.367Chinchilla_lanigera
ENSEBUG00000009018cpsf39871.490ENSCSAG00000007125CPSF39971.347Chlorocebus_sabaeus
ENSEBUG00000009018cpsf38355.952ENSCHOG00000000180CPSF37264.523Choloepus_hoffmanni
ENSEBUG00000009018cpsf39978.843ENSCPBG00000014074CPSF39978.702Chrysemys_picta_bellii
ENSEBUG00000009018cpsf39963.636ENSCING00000007214-9963.636Ciona_intestinalis
ENSEBUG00000009018cpsf39870.487ENSCANG00000034435CPSF39970.344Colobus_angolensis_palliatus
ENSEBUG00000009018cpsf39878.367ENSCGRG00001013134Cpsf39978.223Cricetulus_griseus_chok1gshd
ENSEBUG00000009018cpsf39878.367ENSCGRG00000018319Cpsf39978.223Cricetulus_griseus_crigri
ENSEBUG00000009018cpsf39976.164ENSCSEG00000002021CPSF39975.639Cynoglossus_semilaevis
ENSEBUG00000009018cpsf39976.479ENSCVAG00000015067CPSF39976.197Cyprinodon_variegatus
ENSEBUG00000009018cpsf39975.493ENSDARG00000027649cpsf39975.211Danio_rerio
ENSEBUG00000009018cpsf39877.539ENSDNOG00000008940CPSF39577.396Dasypus_novemcinctus
ENSEBUG00000009018cpsf39182.380ENSDORG00000014263Cpsf39982.380Dipodomys_ordii
ENSEBUG00000009018cpsf39267.786FBgn0261065Cpsf739567.786Drosophila_melanogaster
ENSEBUG00000009018cpsf39170.943ENSETEG00000003893CPSF39970.943Echinops_telfairi
ENSEBUG00000009018cpsf39878.940ENSEASG00005003970CPSF39978.797Equus_asinus_asinus
ENSEBUG00000009018cpsf39878.940ENSECAG00000019911CPSF39985.458Equus_caballus
ENSEBUG00000009018cpsf39865.473ENSEEUG00000015422CPSF39965.330Erinaceus_europaeus
ENSEBUG00000009018cpsf39976.728ENSELUG00000013775cpsf39976.587Esox_lucius
ENSEBUG00000009018cpsf39878.940ENSFCAG00000007852CPSF39978.797Felis_catus
ENSEBUG00000009018cpsf39478.496ENSFALG00000006572CPSF39978.346Ficedula_albicollis
ENSEBUG00000009018cpsf39878.623ENSFDAG00000006317CPSF39878.479Fukomys_damarensis
ENSEBUG00000009018cpsf36056.075ENSFHEG00000012186CPSF39956.075Fundulus_heteroclitus
ENSEBUG00000009018cpsf39975.000ENSFHEG00000014774cpsf39974.718Fundulus_heteroclitus
ENSEBUG00000009018cpsf39975.035ENSGMOG00000003157cpsf39974.612Gadus_morhua
ENSEBUG00000009018cpsf39978.531ENSGALG00000016424CPSF39978.390Gallus_gallus
ENSEBUG00000009018cpsf39976.653ENSGAFG00000008016CPSF39976.305Gambusia_affinis
ENSEBUG00000009018cpsf39072.543ENSGAFG00000019449cpsf39872.543Gambusia_affinis
ENSEBUG00000009018cpsf36973.975ENSGAGG00000025583CPSF39374.074Gopherus_agassizii
ENSEBUG00000009018cpsf39876.858ENSGGOG00000001757CPSF39490.041Gorilla_gorilla
ENSEBUG00000009018cpsf36068.384ENSHBUG00000014332CPSF39967.681Haplochromis_burtoni
ENSEBUG00000009018cpsf39975.989ENSHBUG00000001188cpsf39975.989Haplochromis_burtoni
ENSEBUG00000009018cpsf39878.510ENSHGLG00000000666CPSF39878.367Heterocephalus_glaber_female
ENSEBUG00000009018cpsf39878.510ENSHGLG00100007765CPSF39878.367Heterocephalus_glaber_male
ENSEBUG00000009018cpsf39976.338ENSHCOG00000015957CPSF39975.775Hippocampus_comes
ENSEBUG00000009018cpsf39974.648ENSHCOG00000007251cpsf310074.648Hippocampus_comes
ENSEBUG00000009018cpsf39975.352ENSIPUG00000023488cpsf39974.789Ictalurus_punctatus
ENSEBUG00000009018cpsf39878.940ENSSTOG00000004476CPSF39978.797Ictidomys_tridecemlineatus
ENSEBUG00000009018cpsf39878.223ENSJJAG00000023415Cpsf39978.223Jaculus_jaculus
ENSEBUG00000009018cpsf39976.761ENSKMAG00000007317CPSF39976.338Kryptolebias_marmoratus
ENSEBUG00000009018cpsf39974.576ENSKMAG00000002806cpsf39974.576Kryptolebias_marmoratus
ENSEBUG00000009018cpsf39380.182ENSLBEG00000013492CPSF39980.182Labrus_bergylta
ENSEBUG00000009018cpsf35270.588ENSLBEG00000015018-9970.588Labrus_bergylta
ENSEBUG00000009018cpsf39970.339ENSLBEG00000020569cpsf39670.339Labrus_bergylta
ENSEBUG00000009018cpsf39971.529ENSLACG00000008308CPSF39971.108Latimeria_chalumnae
ENSEBUG00000009018cpsf39976.620ENSLOCG00000016823cpsf39976.338Lepisosteus_oculatus
ENSEBUG00000009018cpsf39878.336ENSLAFG00000009467CPSF39978.192Loxodonta_africana
ENSEBUG00000009018cpsf39878.940ENSMFAG00000001339CPSF39887.174Macaca_fascicularis
ENSEBUG00000009018cpsf39478.346ENSMMUG00000018038CPSF39289.562Macaca_mulatta
ENSEBUG00000009018cpsf39869.286ENSMNEG00000039447CPSF39969.143Macaca_nemestrina
ENSEBUG00000009018cpsf39878.797ENSMLEG00000026825CPSF39292.225Mandrillus_leucophaeus
ENSEBUG00000009018cpsf39975.424ENSMAMG00000003076cpsf39183.708Mastacembelus_armatus
ENSEBUG00000009018cpsf39174.347ENSMAMG00000008835CPSF39973.886Mastacembelus_armatus
ENSEBUG00000009018cpsf39976.685ENSMZEG00005006258CPSF39976.197Maylandia_zebra
ENSEBUG00000009018cpsf39975.989ENSMZEG00005014358cpsf39975.989Maylandia_zebra
ENSEBUG00000009018cpsf39678.832ENSMGAG00000013995CPSF39978.686Meleagris_gallopavo
ENSEBUG00000009018cpsf35567.005ENSMAUG00000000166Cpsf39966.751Mesocricetus_auratus
ENSEBUG00000009018cpsf39874.212ENSMICG00000002363CPSF39974.069Microcebus_murinus
ENSEBUG00000009018cpsf39877.077ENSMOCG00000020067Cpsf39187.162Microtus_ochrogaster
ENSEBUG00000009018cpsf39372.741ENSMMOG00000018212CPSF39872.741Mola_mola
ENSEBUG00000009018cpsf38166.667ENSMMOG00000011923CPSF38473.571Mola_mola
ENSEBUG00000009018cpsf39878.014ENSMODG00000014703CPSF39977.872Monodelphis_domestica
ENSEBUG00000009018cpsf39273.596ENSMALG00000011474CPSF39973.596Monopterus_albus
ENSEBUG00000009018cpsf39975.565ENSMALG00000016416cpsf39975.565Monopterus_albus
ENSEBUG00000009018cpsf39878.080MGP_CAROLIEiJ_G0017640Cpsf39977.937Mus_caroli
ENSEBUG00000009018cpsf39878.080ENSMUSG00000054309Cpsf39692.373Mus_musculus
ENSEBUG00000009018cpsf39877.937MGP_PahariEiJ_G0029397Cpsf39977.794Mus_pahari
ENSEBUG00000009018cpsf39878.080MGP_SPRETEiJ_G0018481Cpsf39977.937Mus_spretus
ENSEBUG00000009018cpsf39878.910ENSMPUG00000013213CPSF39978.766Mustela_putorius_furo
ENSEBUG00000009018cpsf39878.684ENSMLUG00000010636CPSF39978.541Myotis_lucifugus
ENSEBUG00000009018cpsf39878.223ENSNGAG00000019836Cpsf39978.080Nannospalax_galili
ENSEBUG00000009018cpsf39976.130ENSNBRG00000004770cpsf39976.130Neolamprologus_brichardi
ENSEBUG00000009018cpsf39175.193ENSNBRG00000010525CPSF39974.730Neolamprologus_brichardi
ENSEBUG00000009018cpsf39878.940ENSNLEG00000013359CPSF39192.241Nomascus_leucogenys
ENSEBUG00000009018cpsf39852.149ENSMEUG00000013117-9952.149Notamacropus_eugenii
ENSEBUG00000009018cpsf39871.162ENSOPRG00000008902CPSF39971.019Ochotona_princeps
ENSEBUG00000009018cpsf39878.080ENSODEG00000003129CPSF39977.937Octodon_degus
ENSEBUG00000009018cpsf39975.989ENSONIG00000018812cpsf39975.989Oreochromis_niloticus
ENSEBUG00000009018cpsf38275.773ENSOANG00000008577CPSF39975.601Ornithorhynchus_anatinus
ENSEBUG00000009018cpsf39878.797ENSOCUG00000003728CPSF39978.653Oryctolagus_cuniculus
ENSEBUG00000009018cpsf39974.153ENSORLG00000018854cpsf39974.153Oryzias_latipes
ENSEBUG00000009018cpsf39974.294ENSORLG00020013331cpsf39974.294Oryzias_latipes_hni
ENSEBUG00000009018cpsf39974.153ENSORLG00015011017cpsf39974.153Oryzias_latipes_hsok
ENSEBUG00000009018cpsf39974.011ENSOMEG00000010647cpsf39574.011Oryzias_melastigma
ENSEBUG00000009018cpsf39869.198ENSOGAG00000001680CPSF39969.054Otolemur_garnettii
ENSEBUG00000009018cpsf39878.940ENSOARG00000015073CPSF39978.797Ovis_aries
ENSEBUG00000009018cpsf39878.797ENSPPAG00000042457CPSF39192.241Pan_paniscus
ENSEBUG00000009018cpsf39878.367ENSPPRG00000016790CPSF39978.653Panthera_pardus
ENSEBUG00000009018cpsf39878.367ENSPTIG00000003920CPSF39978.653Panthera_tigris_altaica
ENSEBUG00000009018cpsf39878.797ENSPTRG00000011638CPSF39192.241Pan_troglodytes
ENSEBUG00000009018cpsf39878.940ENSPANG00000016798CPSF39489.562Papio_anubis
ENSEBUG00000009018cpsf39977.119ENSPKIG00000023646cpsf39977.108Paramormyrops_kingsleyae
ENSEBUG00000009018cpsf39878.367ENSPSIG00000016144CPSF39978.223Pelodiscus_sinensis
ENSEBUG00000009018cpsf36065.802ENSPMGG00000015311CPSF39964.858Periophthalmus_magnuspinnatus
ENSEBUG00000009018cpsf37782.784ENSPMGG00000006141-9482.784Periophthalmus_magnuspinnatus
ENSEBUG00000009018cpsf39877.937ENSPEMG00000017668Cpsf39978.223Peromyscus_maniculatus_bairdii
ENSEBUG00000009018cpsf37688.787ENSPMAG00000004841cpsf310088.787Petromyzon_marinus
ENSEBUG00000009018cpsf39777.858ENSPCIG00000009823CPSF39781.327Phascolarctos_cinereus
ENSEBUG00000009018cpsf39976.371ENSPFOG00000010418-9976.023Poecilia_formosa
ENSEBUG00000009018cpsf39974.330ENSPFOG00000015922cpsf39974.330Poecilia_formosa
ENSEBUG00000009018cpsf39974.330ENSPLAG00000000882cpsf39974.330Poecilia_latipinna
ENSEBUG00000009018cpsf35967.136ENSPLAG00000021300-9966.509Poecilia_latipinna
ENSEBUG00000009018cpsf39974.330ENSPMEG00000018309cpsf39974.330Poecilia_mexicana
ENSEBUG00000009018cpsf39972.113ENSPREG00000004482CPSF39971.751Poecilia_reticulata
ENSEBUG00000009018cpsf39073.011ENSPREG00000014875cpsf39873.011Poecilia_reticulata
ENSEBUG00000009018cpsf39874.785ENSPPYG00000012666CPSF39974.642Pongo_abelii
ENSEBUG00000009018cpsf37561.698ENSPCAG00000015042CPSF38161.698Procavia_capensis
ENSEBUG00000009018cpsf38980.872ENSPCOG00000023016CPSF39980.872Propithecus_coquereli
ENSEBUG00000009018cpsf39878.766ENSPVAG00000005324CPSF39978.623Pteropus_vampyrus
ENSEBUG00000009018cpsf39975.989ENSPNYG00000004405cpsf39975.989Pundamilia_nyererei
ENSEBUG00000009018cpsf37683.670ENSPNYG00000021047CPSF39183.670Pundamilia_nyererei
ENSEBUG00000009018cpsf39975.915ENSPNAG00000023060cpsf39975.634Pygocentrus_nattereri
ENSEBUG00000009018cpsf39878.192ENSRNOG00000052418Cpsf39978.049Rattus_norvegicus
ENSEBUG00000009018cpsf39874.642ENSRBIG00000041615CPSF39975.188Rhinopithecus_bieti
ENSEBUG00000009018cpsf39878.797ENSRROG00000033792CPSF39978.653Rhinopithecus_roxellana
ENSEBUG00000009018cpsf38143.359YLR277CYSH18443.359Saccharomyces_cerevisiae
ENSEBUG00000009018cpsf39675.766ENSSBOG00000027263CPSF39775.620Saimiri_boliviensis_boliviensis
ENSEBUG00000009018cpsf39878.797ENSSHAG00000007024CPSF39978.653Sarcophilus_harrisii
ENSEBUG00000009018cpsf39977.010ENSSFOG00015002108cpsf39976.587Scleropages_formosus
ENSEBUG00000009018cpsf39379.483ENSSMAG00000020534CPSF39779.483Scophthalmus_maximus
ENSEBUG00000009018cpsf39976.479ENSSDUG00000018498CPSF39976.056Seriola_dumerili
ENSEBUG00000009018cpsf39974.859ENSSDUG00000002828cpsf39774.859Seriola_dumerili
ENSEBUG00000009018cpsf39974.859ENSSLDG00000008469cpsf39383.946Seriola_lalandi_dorsalis
ENSEBUG00000009018cpsf39976.479ENSSLDG00000005234CPSF39976.056Seriola_lalandi_dorsalis
ENSEBUG00000009018cpsf38778.868ENSSARG00000005186CPSF37778.868Sorex_araneus
ENSEBUG00000009018cpsf39676.923ENSSPUG00000015525CPSF39776.923Sphenodon_punctatus
ENSEBUG00000009018cpsf39976.338ENSSPAG00000002906CPSF39975.915Stegastes_partitus
ENSEBUG00000009018cpsf39975.565ENSSPAG00000018579cpsf39975.141Stegastes_partitus
ENSEBUG00000009018cpsf39878.940ENSSSCG00000020799CPSF39978.797Sus_scrofa
ENSEBUG00000009018cpsf39978.917ENSTGUG00000013016CPSF39978.775Taeniopygia_guttata
ENSEBUG00000009018cpsf35962.648ENSTRUG00000013905CPSF39961.939Takifugu_rubripes
ENSEBUG00000009018cpsf39974.294ENSTRUG00000007030cpsf39874.294Takifugu_rubripes
ENSEBUG00000009018cpsf36586.981ENSTBEG00000002707CPSF37186.981Tupaia_belangeri
ENSEBUG00000009018cpsf38670.488ENSTTRG00000000861CPSF38770.488Tursiops_truncatus
ENSEBUG00000009018cpsf39381.297ENSUAMG00000007535CPSF39382.335Ursus_americanus
ENSEBUG00000009018cpsf39478.346ENSUMAG00000003676CPSF39487.478Ursus_maritimus
ENSEBUG00000009018cpsf38982.334ENSVPAG00000008041CPSF39982.334Vicugna_pacos
ENSEBUG00000009018cpsf39878.940ENSVVUG00000002194CPSF39978.797Vulpes_vulpes
ENSEBUG00000009018cpsf39976.130ENSXETG00000008263cpsf39976.130Xenopus_tropicalis
ENSEBUG00000009018cpsf35565.394ENSXCOG00000000957-8764.706Xiphophorus_couchianus
ENSEBUG00000009018cpsf39974.048ENSXCOG00000019695cpsf39974.048Xiphophorus_couchianus
ENSEBUG00000009018cpsf39974.189ENSXMAG00000009784cpsf39974.189Xiphophorus_maculatus
ENSEBUG00000009018cpsf39976.512ENSXMAG00000027291CPSF39976.164Xiphophorus_maculatus

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