EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000010069 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 117785 bases
Position: chrFYBX02010103.1:544123-661907
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000016009	UPF1_Zn_bind	PF09416.10	3e-75	1	1
ENSEBUP00000016026	UPF1_Zn_bind	PF09416.10	3.3e-75	1	1
ENSEBUP00000016049	UPF1_Zn_bind	PF09416.10	3.4e-75	1	1
ENSEBUP00000016009	ResIII	PF04851.15	4.6e-05	1	1
ENSEBUP00000016049	ResIII	PF04851.15	4.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000016625	-	3949	-	ENSEBUP00000016049	623 (aa)	-	-
ENSEBUT00000016585	-	3083	-	ENSEBUP00000016009	600 (aa)	-	-
ENSEBUT00000016602	-	4244	-	ENSEBUP00000016026	607 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000010069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000010069's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000010069	upf1	96	85.413	ENSG00000005007	UPF1	55	85.575	Homo_sapiens
ENSEBUG00000010069	upf1	96	87.417	ENSAPOG00000023773	upf1	55	87.086	Acanthochromis_polyacanthus
ENSEBUG00000010069	upf1	96	86.942	ENSAPOG00000010916	-	54	86.612	Acanthochromis_polyacanthus
ENSEBUG00000010069	upf1	96	84.320	ENSAMEG00000011474	UPF1	55	84.160	Ailuropoda_melanoleuca
ENSEBUG00000010069	upf1	96	87.252	ENSACIG00000019949	upf1	54	86.921	Amphilophus_citrinellus
ENSEBUG00000010069	upf1	87	91.031	ENSACIG00000010985	-	51	91.031	Amphilophus_citrinellus
ENSEBUG00000010069	upf1	96	87.107	ENSAOCG00000006352	-	54	86.777	Amphiprion_ocellaris
ENSEBUG00000010069	upf1	96	87.417	ENSAOCG00000018519	upf1	55	87.086	Amphiprion_ocellaris
ENSEBUG00000010069	upf1	96	87.107	ENSAPEG00000006292	-	54	86.777	Amphiprion_percula
ENSEBUG00000010069	upf1	96	87.417	ENSAPEG00000016344	upf1	55	87.086	Amphiprion_percula
ENSEBUG00000010069	upf1	96	87.417	ENSATEG00000017867	upf1	53	87.086	Anabas_testudineus
ENSEBUG00000010069	upf1	96	86.777	ENSATEG00000016606	-	54	86.446	Anabas_testudineus
ENSEBUG00000010069	upf1	89	88.608	ENSAPLG00000009175	UPF1	52	88.608	Anas_platyrhynchos
ENSEBUG00000010069	upf1	96	86.964	ENSACLG00000022630	-	54	86.634	Astatotilapia_calliptera
ENSEBUG00000010069	upf1	96	87.086	ENSACLG00000007181	upf1	54	86.755	Astatotilapia_calliptera
ENSEBUG00000010069	upf1	96	86.777	ENSAMXG00000042187	upf1	54	86.446	Astyanax_mexicanus
ENSEBUG00000010069	upf1	96	84.185	ENSBTAG00000020922	UPF1	56	83.866	Bos_taurus
ENSEBUG00000010069	upf1	97	48.071	WBGene00004880	smg-2	56	47.749	Caenorhabditis_elegans
ENSEBUG00000010069	upf1	96	83.917	ENSCJAG00000019627	UPF1	56	84.076	Callithrix_jacchus
ENSEBUG00000010069	upf1	96	83.625	ENSCAFG00000014578	UPF1	56	83.466	Canis_familiaris
ENSEBUG00000010069	upf1	96	85.113	ENSCAFG00020012347	UPF1	55	84.951	Canis_lupus_dingo
ENSEBUG00000010069	upf1	96	85.691	ENSCHIG00000011018	UPF1	55	85.366	Capra_hircus
ENSEBUG00000010069	upf1	89	88.909	ENSTSYG00000008877	UPF1	51	88.909	Carlito_syrichta
ENSEBUG00000010069	upf1	89	88.909	ENSCAPG00000005758	UPF1	50	88.909	Cavia_aperea
ENSEBUG00000010069	upf1	96	85.575	ENSCPOG00000025463	UPF1	55	84.702	Cavia_porcellus
ENSEBUG00000010069	upf1	96	85.413	ENSCCAG00000032175	UPF1	55	85.575	Cebus_capucinus
ENSEBUG00000010069	upf1	88	89.174	ENSCATG00000040306	UPF1	52	88.267	Cercocebus_atys
ENSEBUG00000010069	upf1	89	88.727	ENSCLAG00000004037	UPF1	52	88.727	Chinchilla_lanigera
ENSEBUG00000010069	upf1	96	85.413	ENSCSAG00000005276	UPF1	55	85.737	Chlorocebus_sabaeus
ENSEBUG00000010069	upf1	96	85.948	ENSCPBG00000012513	UPF1	55	86.275	Chrysemys_picta_bellii
ENSEBUG00000010069	upf1	95	75.459	ENSCING00000021399	-	68	75.459	Ciona_intestinalis
ENSEBUG00000010069	upf1	95	76.254	ENSCSAVG00000006533	-	54	76.254	Ciona_savignyi
ENSEBUG00000010069	upf1	89	88.727	ENSCANG00000029819	UPF1	52	87.971	Colobus_angolensis_palliatus
ENSEBUG00000010069	upf1	96	86.438	ENSCGRG00001021067	Upf1	55	86.601	Cricetulus_griseus_chok1gshd
ENSEBUG00000010069	upf1	92	87.170	ENSCGRG00000013480	Upf1	53	87.170	Cricetulus_griseus_crigri
ENSEBUG00000010069	upf1	96	86.921	ENSCSEG00000016159	-	54	86.589	Cynoglossus_semilaevis
ENSEBUG00000010069	upf1	96	87.107	ENSCSEG00000017239	upf1	55	87.252	Cynoglossus_semilaevis
ENSEBUG00000010069	upf1	96	86.446	ENSCVAG00000010561	upf1	54	86.446	Cyprinodon_variegatus
ENSEBUG00000010069	upf1	96	86.942	ENSDARG00000016302	upf1	54	86.612	Danio_rerio
ENSEBUG00000010069	upf1	94	85.370	ENSDORG00000009984	Upf1	52	86.926	Dipodomys_ordii
ENSEBUG00000010069	upf1	96	68.740	FBgn0030354	Upf1	51	68.576	Drosophila_melanogaster
ENSEBUG00000010069	upf1	96	85.691	ENSEASG00005006549	UPF1	55	85.366	Equus_asinus_asinus
ENSEBUG00000010069	upf1	96	85.691	ENSECAG00000010639	UPF1	55	85.366	Equus_caballus
ENSEBUG00000010069	upf1	96	85.738	ENSELUG00000012916	-	54	85.410	Esox_lucius
ENSEBUG00000010069	upf1	96	85.785	ENSELUG00000020917	upf1	59	85.785	Esox_lucius
ENSEBUG00000010069	upf1	96	83.625	ENSFCAG00000009757	UPF1	56	83.466	Felis_catus
ENSEBUG00000010069	upf1	90	88.949	ENSFALG00000009312	UPF1	50	89.725	Ficedula_albicollis
ENSEBUG00000010069	upf1	89	88.727	ENSFDAG00000014816	UPF1	52	88.727	Fukomys_damarensis
ENSEBUG00000010069	upf1	96	87.086	ENSFHEG00000006428	upf1	57	86.755	Fundulus_heteroclitus
ENSEBUG00000010069	upf1	96	86.020	ENSGMOG00000007541	upf1	54	85.691	Gadus_morhua
ENSEBUG00000010069	upf1	96	85.714	ENSGALG00000003220	UPF1	55	85.877	Gallus_gallus
ENSEBUG00000010069	upf1	96	86.612	ENSGAFG00000004831	upf1	55	86.281	Gambusia_affinis
ENSEBUG00000010069	upf1	96	86.985	ENSGAGG00000022217	UPF1	55	86.985	Gopherus_agassizii
ENSEBUG00000010069	upf1	89	90.538	ENSGGOG00000002608	UPF1	51	90.538	Gorilla_gorilla
ENSEBUG00000010069	upf1	96	65.677	ENSHBUG00000014694	upf1	58	64.532	Haplochromis_burtoni
ENSEBUG00000010069	upf1	96	86.964	ENSHBUG00000008939	upf1	60	86.634	Haplochromis_burtoni
ENSEBUG00000010069	upf1	96	83.917	ENSHGLG00000010900	UPF1	56	83.917	Heterocephalus_glaber_female
ENSEBUG00000010069	upf1	89	88.727	ENSHGLG00100005904	UPF1	51	88.727	Heterocephalus_glaber_male
ENSEBUG00000010069	upf1	96	86.612	ENSHCOG00000008918	upf1	54	86.281	Hippocampus_comes
ENSEBUG00000010069	upf1	96	87.107	ENSIPUG00000005108	UPF1	54	86.777	Ictalurus_punctatus
ENSEBUG00000010069	upf1	96	85.413	ENSSTOG00000009196	UPF1	55	85.575	Ictidomys_tridecemlineatus
ENSEBUG00000010069	upf1	96	85.024	ENSJJAG00000023151	Upf1	55	85.185	Jaculus_jaculus
ENSEBUG00000010069	upf1	96	86.612	ENSKMAG00000004962	upf1	55	86.281	Kryptolebias_marmoratus
ENSEBUG00000010069	upf1	96	87.086	ENSLBEG00000014862	upf1	54	86.755	Labrus_bergylta
ENSEBUG00000010069	upf1	96	86.469	ENSLBEG00000027848	-	54	86.139	Labrus_bergylta
ENSEBUG00000010069	upf1	96	87.438	ENSLOCG00000002072	upf1	54	87.107	Lepisosteus_oculatus
ENSEBUG00000010069	upf1	96	83.892	ENSLAFG00000014963	UPF1	56	83.892	Loxodonta_africana
ENSEBUG00000010069	upf1	96	85.161	ENSMFAG00000037748	UPF1	55	85.161	Macaca_fascicularis
ENSEBUG00000010069	upf1	96	84.591	ENSMMUG00000023286	UPF1	56	84.076	Macaca_mulatta
ENSEBUG00000010069	upf1	96	85.161	ENSMNEG00000000046	UPF1	55	85.161	Macaca_nemestrina
ENSEBUG00000010069	upf1	89	88.727	ENSMLEG00000028404	UPF1	52	88.727	Mandrillus_leucophaeus
ENSEBUG00000010069	upf1	96	86.964	ENSMAMG00000006231	-	54	86.634	Mastacembelus_armatus
ENSEBUG00000010069	upf1	96	87.583	ENSMAMG00000006229	upf1	53	87.252	Mastacembelus_armatus
ENSEBUG00000010069	upf1	96	86.964	ENSMZEG00005016386	-	54	86.634	Maylandia_zebra
ENSEBUG00000010069	upf1	96	87.086	ENSMZEG00005003489	upf1	54	86.755	Maylandia_zebra
ENSEBUG00000010069	upf1	89	88.727	ENSMGAG00000004745	UPF1	52	88.727	Meleagris_gallopavo
ENSEBUG00000010069	upf1	89	89.091	ENSMAUG00000011398	Upf1	50	89.091	Mesocricetus_auratus
ENSEBUG00000010069	upf1	96	85.413	ENSMICG00000001659	UPF1	55	85.575	Microcebus_murinus
ENSEBUG00000010069	upf1	96	84.912	ENSMOCG00000005699	Upf1	55	85.233	Microtus_ochrogaster
ENSEBUG00000010069	upf1	96	86.589	ENSMMOG00000007881	upf1	55	86.258	Mola_mola
ENSEBUG00000010069	upf1	89	89.483	ENSMMOG00000007537	-	53	89.483	Mola_mola
ENSEBUG00000010069	upf1	95	85.299	ENSMODG00000003689	UPF1	56	83.386	Monodelphis_domestica
ENSEBUG00000010069	upf1	96	87.086	ENSMALG00000000144	upf1	55	86.755	Monopterus_albus
ENSEBUG00000010069	upf1	96	87.752	ENSMALG00000018100	-	53	87.752	Monopterus_albus
ENSEBUG00000010069	upf1	96	86.438	MGP_CAROLIEiJ_G0031142	Upf1	55	86.601	Mus_caroli
ENSEBUG00000010069	upf1	96	86.438	ENSMUSG00000058301	Upf1	55	86.601	Mus_musculus
ENSEBUG00000010069	upf1	96	86.438	MGP_PahariEiJ_G0021607	Upf1	55	86.601	Mus_pahari
ENSEBUG00000010069	upf1	96	86.438	MGP_SPRETEiJ_G0032260	Upf1	55	86.601	Mus_spretus
ENSEBUG00000010069	upf1	96	85.113	ENSMPUG00000015516	UPF1	55	84.951	Mustela_putorius_furo
ENSEBUG00000010069	upf1	96	85.179	ENSMLUG00000012122	UPF1	55	85.342	Myotis_lucifugus
ENSEBUG00000010069	upf1	96	84.665	ENSNGAG00000024107	Upf1	56	84.345	Nannospalax_galili
ENSEBUG00000010069	upf1	96	87.086	ENSNBRG00000000670	upf1	55	86.755	Neolamprologus_brichardi
ENSEBUG00000010069	upf1	96	81.298	ENSNBRG00000022069	-	51	88.973	Neolamprologus_brichardi
ENSEBUG00000010069	upf1	89	78.545	ENSNLEG00000006062	UPF1	50	78.545	Nomascus_leucogenys
ENSEBUG00000010069	upf1	89	81.818	ENSOPRG00000014018	UPF1	52	81.818	Ochotona_princeps
ENSEBUG00000010069	upf1	96	84.903	ENSODEG00000012426	UPF1	55	85.390	Octodon_degus
ENSEBUG00000010069	upf1	96	87.086	ENSONIG00000010452	upf1	54	86.755	Oreochromis_niloticus
ENSEBUG00000010069	upf1	96	86.634	ENSONIG00000012729	-	54	86.634	Oreochromis_niloticus
ENSEBUG00000010069	upf1	96	83.943	ENSOANG00000004568	UPF1	56	84.320	Ornithorhynchus_anatinus
ENSEBUG00000010069	upf1	96	87.107	ENSORLG00000008453	upf1	54	86.491	Oryzias_latipes
ENSEBUG00000010069	upf1	96	86.799	ENSORLG00020014758	upf1	54	86.184	Oryzias_latipes_hni
ENSEBUG00000010069	upf1	96	86.799	ENSORLG00015010165	upf1	54	86.184	Oryzias_latipes_hsok
ENSEBUG00000010069	upf1	96	86.446	ENSOMEG00000003665	upf1	54	86.446	Oryzias_melastigma
ENSEBUG00000010069	upf1	96	85.413	ENSOGAG00000012866	UPF1	55	85.575	Otolemur_garnettii
ENSEBUG00000010069	upf1	95	83.441	ENSOARG00000010739	UPF1	57	83.441	Ovis_aries
ENSEBUG00000010069	upf1	89	88.727	ENSPPAG00000043884	UPF1	51	87.971	Pan_paniscus
ENSEBUG00000010069	upf1	96	83.625	ENSPPRG00000023470	UPF1	56	83.466	Panthera_pardus
ENSEBUG00000010069	upf1	89	90.203	ENSPTIG00000010159	UPF1	53	90.203	Panthera_tigris_altaica
ENSEBUG00000010069	upf1	96	85.161	ENSPTRG00000010721	UPF1	55	85.161	Pan_troglodytes
ENSEBUG00000010069	upf1	96	85.161	ENSPANG00000008847	UPF1	55	85.161	Papio_anubis
ENSEBUG00000010069	upf1	96	87.459	ENSPKIG00000006069	upf1	58	87.129	Paramormyrops_kingsleyae
ENSEBUG00000010069	upf1	96	87.252	ENSPMGG00000017327	upf1	54	86.921	Periophthalmus_magnuspinnatus
ENSEBUG00000010069	upf1	96	84.912	ENSPEMG00000001085	Upf1	55	85.072	Peromyscus_maniculatus_bairdii
ENSEBUG00000010069	upf1	96	90.296	ENSPMAG00000001206	upf1	55	89.638	Petromyzon_marinus
ENSEBUG00000010069	upf1	96	85.575	ENSPCIG00000006156	UPF1	55	85.413	Phascolarctos_cinereus
ENSEBUG00000010069	upf1	96	86.424	ENSPLAG00000018155	-	54	86.424	Poecilia_latipinna
ENSEBUG00000010069	upf1	96	86.612	ENSPLAG00000016232	-	55	86.281	Poecilia_latipinna
ENSEBUG00000010069	upf1	96	86.469	ENSPMEG00000016319	-	55	86.139	Poecilia_mexicana
ENSEBUG00000010069	upf1	96	86.589	ENSPMEG00000011443	-	54	86.589	Poecilia_mexicana
ENSEBUG00000010069	upf1	96	86.612	ENSPREG00000011247	-	55	86.281	Poecilia_reticulata
ENSEBUG00000010069	upf1	96	86.755	ENSPREG00000009940	upf1	54	86.589	Poecilia_reticulata
ENSEBUG00000010069	upf1	96	83.758	ENSPPYG00000009752	UPF1	58	83.917	Pongo_abelii
ENSEBUG00000010069	upf1	96	85.048	ENSPCOG00000023813	UPF1	55	85.048	Propithecus_coquereli
ENSEBUG00000010069	upf1	96	85.113	ENSPVAG00000003183	UPF1	55	84.951	Pteropus_vampyrus
ENSEBUG00000010069	upf1	96	87.086	ENSPNYG00000003694	upf1	54	86.755	Pundamilia_nyererei
ENSEBUG00000010069	upf1	96	86.964	ENSPNYG00000016731	-	54	86.634	Pundamilia_nyererei
ENSEBUG00000010069	upf1	96	86.612	ENSPNAG00000025614	upf1	54	86.281	Pygocentrus_nattereri
ENSEBUG00000010069	upf1	96	86.438	ENSRNOG00000020134	Upf1	55	86.601	Rattus_norvegicus
ENSEBUG00000010069	upf1	89	84.364	ENSRBIG00000013894	UPF1	51	83.662	Rhinopithecus_bieti
ENSEBUG00000010069	upf1	89	88.727	ENSRROG00000040935	UPF1	52	87.971	Rhinopithecus_roxellana
ENSEBUG00000010069	upf1	87	50.933	YMR080C	NAM7	55	50.933	Saccharomyces_cerevisiae
ENSEBUG00000010069	upf1	88	89.031	ENSSBOG00000023632	UPF1	50	89.031	Saimiri_boliviensis_boliviensis
ENSEBUG00000010069	upf1	89	88.727	ENSSHAG00000010499	UPF1	52	88.727	Sarcophilus_harrisii
ENSEBUG00000010069	upf1	96	87.294	ENSSFOG00015021095	upf1	52	90.203	Scleropages_formosus
ENSEBUG00000010069	upf1	96	86.634	ENSSMAG00000021018	-	54	86.304	Scophthalmus_maximus
ENSEBUG00000010069	upf1	96	87.395	ENSSMAG00000005055	upf1	53	87.059	Scophthalmus_maximus
ENSEBUG00000010069	upf1	96	86.799	ENSSDUG00000009629	-	54	86.469	Seriola_dumerili
ENSEBUG00000010069	upf1	96	87.417	ENSSDUG00000013320	upf1	53	87.086	Seriola_dumerili
ENSEBUG00000010069	upf1	96	87.417	ENSSLDG00000020868	upf1	54	87.086	Seriola_lalandi_dorsalis
ENSEBUG00000010069	upf1	96	86.799	ENSSLDG00000006878	-	54	86.469	Seriola_lalandi_dorsalis
ENSEBUG00000010069	upf1	96	86.207	ENSSPUG00000010538	UPF1	58	86.371	Sphenodon_punctatus
ENSEBUG00000010069	upf1	96	87.107	ENSSPAG00000011521	-	54	86.777	Stegastes_partitus
ENSEBUG00000010069	upf1	96	82.616	ENSSPAG00000000003	upf1	54	82.285	Stegastes_partitus
ENSEBUG00000010069	upf1	96	85.691	ENSSSCG00000039301	UPF1	52	90.203	Sus_scrofa
ENSEBUG00000010069	upf1	96	83.573	ENSTGUG00000001057	UPF1	93	83.732	Taeniopygia_guttata
ENSEBUG00000010069	upf1	96	86.424	ENSTRUG00000000150	upf1	55	86.258	Takifugu_rubripes
ENSEBUG00000010069	upf1	96	86.446	ENSTRUG00000005131	-	54	86.116	Takifugu_rubripes
ENSEBUG00000010069	upf1	96	78.675	ENSTTRG00000011544	UPF1	55	79.024	Tursiops_truncatus
ENSEBUG00000010069	upf1	96	85.113	ENSUAMG00000007093	UPF1	55	84.951	Ursus_americanus
ENSEBUG00000010069	upf1	93	86.538	ENSUMAG00000006652	UPF1	52	90.203	Ursus_maritimus
ENSEBUG00000010069	upf1	96	85.113	ENSVVUG00000007797	UPF1	55	84.951	Vulpes_vulpes
ENSEBUG00000010069	upf1	96	83.201	ENSXETG00000013602	upf1	59	83.518	Xenopus_tropicalis
ENSEBUG00000010069	upf1	87	90.170	ENSXCOG00000005764	-	51	90.170	Xiphophorus_couchianus
ENSEBUG00000010069	upf1	96	86.755	ENSXCOG00000015275	-	55	86.755	Xiphophorus_couchianus
ENSEBUG00000010069	upf1	96	86.921	ENSXMAG00000001703	-	55	86.921	Xiphophorus_maculatus
ENSEBUG00000010069	upf1	96	86.304	ENSXMAG00000002540	-	55	85.974	Xiphophorus_maculatus