EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000010133 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 53922 bases
Position: chrFYBX02010398.1:806113-860034
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000016113	RRM_1	PF00076.22	1.2e-18	1	2
ENSEBUP00000016113	RRM_1	PF00076.22	1.2e-18	2	2
ENSEBUP00000016126	RRM_1	PF00076.22	5.5e-18	1	2
ENSEBUP00000016126	RRM_1	PF00076.22	5.5e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000016689	-	4854	-	ENSEBUP00000016113	383 (aa)	-	-
ENSEBUT00000016702	-	2039	-	ENSEBUP00000016126	604 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000010133's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000010133's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000010133	pspc1	70	34.444	ENSEBUG00000014083	-	66	34.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000010133	pspc1	72	51.273	ENSG00000121390	PSPC1	84	46.781	Homo_sapiens
ENSEBUG00000010133	pspc1	75	47.038	ENSAPOG00000015946	pspc1	69	45.283	Acanthochromis_polyacanthus
ENSEBUG00000010133	pspc1	82	47.302	ENSAMEG00000017420	PSPC1	62	45.087	Ailuropoda_melanoleuca
ENSEBUG00000010133	pspc1	80	45.246	ENSACIG00000018695	pspc1	57	44.805	Amphilophus_citrinellus
ENSEBUG00000010133	pspc1	78	46.465	ENSAOCG00000005279	pspc1	68	44.860	Amphiprion_ocellaris
ENSEBUG00000010133	pspc1	78	46.465	ENSAPEG00000015927	pspc1	68	44.860	Amphiprion_percula
ENSEBUG00000010133	pspc1	76	46.207	ENSATEG00000004878	pspc1	55	44.918	Anabas_testudineus
ENSEBUG00000010133	pspc1	74	46.667	ENSAPLG00000003643	SFPQ	54	44.771	Anas_platyrhynchos
ENSEBUG00000010133	pspc1	58	51.339	ENSAPLG00000006246	PSPC1	57	47.843	Anas_platyrhynchos
ENSEBUG00000010133	pspc1	72	51.636	ENSACAG00000002093	PSPC1	53	48.693	Anolis_carolinensis
ENSEBUG00000010133	pspc1	82	47.302	ENSANAG00000000059	PSPC1	82	45.087	Aotus_nancymaae
ENSEBUG00000010133	pspc1	76	45.517	ENSACLG00000027220	pspc1	55	45.517	Astatotilapia_calliptera
ENSEBUG00000010133	pspc1	75	47.387	ENSAMXG00000036881	pspc1	56	45.062	Astyanax_mexicanus
ENSEBUG00000010133	pspc1	77	49.492	ENSBTAG00000003934	PSPC1	57	46.933	Bos_taurus
ENSEBUG00000010133	pspc1	82	47.302	ENSCJAG00000004554	PSPC1	62	45.087	Callithrix_jacchus
ENSEBUG00000010133	pspc1	72	51.273	ENSCAFG00020002009	PSPC1	82	45.087	Canis_lupus_dingo
ENSEBUG00000010133	pspc1	77	49.492	ENSCHIG00000016708	PSPC1	57	46.933	Capra_hircus
ENSEBUG00000010133	pspc1	75	49.653	ENSCPOG00000000395	PSPC1	78	46.951	Cavia_porcellus
ENSEBUG00000010133	pspc1	82	47.302	ENSCCAG00000033498	PSPC1	62	45.087	Cebus_capucinus
ENSEBUG00000010133	pspc1	72	51.273	ENSCATG00000036434	PSPC1	86	45.238	Cercocebus_atys
ENSEBUG00000010133	pspc1	57	52.273	ENSCLAG00000005241	PSPC1	50	48.606	Chinchilla_lanigera
ENSEBUG00000010133	pspc1	79	49.169	ENSCHOG00000008913	PSPC1	59	46.687	Choloepus_hoffmanni
ENSEBUG00000010133	pspc1	72	50.909	ENSCPBG00000020859	PSPC1	54	48.039	Chrysemys_picta_bellii
ENSEBUG00000010133	pspc1	71	47.059	ENSCANG00000018948	PSPC1	75	48.606	Colobus_angolensis_palliatus
ENSEBUG00000010133	pspc1	78	48.485	ENSCGRG00001018368	Pspc1	58	46.037	Cricetulus_griseus_chok1gshd
ENSEBUG00000010133	pspc1	78	48.485	ENSCGRG00000011724	Pspc1	58	46.037	Cricetulus_griseus_crigri
ENSEBUG00000010133	pspc1	72	48.014	ENSCVAG00000007679	-	64	42.330	Cyprinodon_variegatus
ENSEBUG00000010133	pspc1	78	45.545	ENSDARG00000006621	pspc1	61	43.452	Danio_rerio
ENSEBUG00000010133	pspc1	75	49.653	ENSDNOG00000011078	PSPC1	59	45.833	Dasypus_novemcinctus
ENSEBUG00000010133	pspc1	80	45.574	ENSDORG00000016050	Pspc1	59	43.452	Dipodomys_ordii
ENSEBUG00000010133	pspc1	72	51.273	ENSEASG00005000119	PSPC1	82	45.087	Equus_asinus_asinus
ENSEBUG00000010133	pspc1	72	51.273	ENSECAG00000017286	PSPC1	82	45.087	Equus_caballus
ENSEBUG00000010133	pspc1	72	45.818	ENSEEUG00000011288	-	58	42.236	Erinaceus_europaeus
ENSEBUG00000010133	pspc1	82	44.937	ENSELUG00000003746	pspc1	80	42.061	Esox_lucius
ENSEBUG00000010133	pspc1	82	47.302	ENSFCAG00000027841	PSPC1	82	45.087	Felis_catus
ENSEBUG00000010133	pspc1	72	51.273	ENSFALG00000008750	PSPC1	53	48.366	Ficedula_albicollis
ENSEBUG00000010133	pspc1	83	46.562	ENSFDAG00000002617	PSPC1	64	44.444	Fukomys_damarensis
ENSEBUG00000010133	pspc1	81	45.367	ENSGMOG00000015074	pspc1	56	45.367	Gadus_morhua
ENSEBUG00000010133	pspc1	72	51.273	ENSGALG00000017142	PSPC1	60	45.994	Gallus_gallus
ENSEBUG00000010133	pspc1	82	45.768	ENSGAFG00000006327	pspc1	67	43.714	Gambusia_affinis
ENSEBUG00000010133	pspc1	74	46.099	ENSGACG00000014901	pspc1	82	43.711	Gasterosteus_aculeatus
ENSEBUG00000010133	pspc1	72	50.909	ENSGAGG00000019164	PSPC1	54	48.039	Gopherus_agassizii
ENSEBUG00000010133	pspc1	72	51.273	ENSGGOG00000003414	PSPC1	79	45.536	Gorilla_gorilla
ENSEBUG00000010133	pspc1	77	44.746	ENSHBUG00000001139	pspc1	57	43.302	Haplochromis_burtoni
ENSEBUG00000010133	pspc1	77	49.495	ENSHGLG00000018811	PSPC1	60	45.536	Heterocephalus_glaber_female
ENSEBUG00000010133	pspc1	75	49.653	ENSHGLG00100007962	PSPC1	91	46.584	Heterocephalus_glaber_male
ENSEBUG00000010133	pspc1	82	44.444	ENSHCOG00000013251	pspc1	72	42.775	Hippocampus_comes
ENSEBUG00000010133	pspc1	77	48.805	ENSIPUG00000013192	pspc1	62	44.857	Ictalurus_punctatus
ENSEBUG00000010133	pspc1	79	48.837	ENSSTOG00000026833	PSPC1	79	45.833	Ictidomys_tridecemlineatus
ENSEBUG00000010133	pspc1	72	51.273	ENSJJAG00000018334	Pspc1	58	46.037	Jaculus_jaculus
ENSEBUG00000010133	pspc1	76	38.796	ENSKMAG00000013525	-	72	37.101	Kryptolebias_marmoratus
ENSEBUG00000010133	pspc1	85	43.072	ENSLBEG00000004474	pspc1	72	41.322	Labrus_bergylta
ENSEBUG00000010133	pspc1	72	49.818	ENSLACG00000010762	PSPC1	55	46.326	Latimeria_chalumnae
ENSEBUG00000010133	pspc1	75	48.780	ENSLOCG00000010832	pspc1	57	46.965	Lepisosteus_oculatus
ENSEBUG00000010133	pspc1	80	48.039	ENSLAFG00000010968	PSPC1	59	46.386	Loxodonta_africana
ENSEBUG00000010133	pspc1	72	51.273	ENSMFAG00000032728	PSPC1	87	45.536	Macaca_fascicularis
ENSEBUG00000010133	pspc1	72	51.273	ENSMMUG00000020262	PSPC1	84	45.536	Macaca_mulatta
ENSEBUG00000010133	pspc1	72	51.273	ENSMNEG00000027401	PSPC1	66	45.536	Macaca_nemestrina
ENSEBUG00000010133	pspc1	57	52.273	ENSMLEG00000039043	PSPC1	53	48.606	Mandrillus_leucophaeus
ENSEBUG00000010133	pspc1	75	45.645	ENSMAMG00000004333	pspc1	59	43.438	Mastacembelus_armatus
ENSEBUG00000010133	pspc1	76	45.517	ENSMZEG00005005726	pspc1	55	45.517	Maylandia_zebra
ENSEBUG00000010133	pspc1	58	51.339	ENSMGAG00000015134	PSPC1	57	47.843	Meleagris_gallopavo
ENSEBUG00000010133	pspc1	84	46.341	ENSMAUG00000021067	Pspc1	67	46.061	Mesocricetus_auratus
ENSEBUG00000010133	pspc1	77	48.980	ENSMICG00000013970	PSPC1	77	46.462	Microcebus_murinus
ENSEBUG00000010133	pspc1	77	48.980	ENSMOCG00000006060	Pspc1	57	46.462	Microtus_ochrogaster
ENSEBUG00000010133	pspc1	78	48.485	ENSMODG00000008029	PSPC1	50	45.238	Monodelphis_domestica
ENSEBUG00000010133	pspc1	75	45.645	ENSMALG00000008914	pspc1	64	42.000	Monopterus_albus
ENSEBUG00000010133	pspc1	78	48.822	MGP_CAROLIEiJ_G0019341	Pspc1	84	44.898	Mus_caroli
ENSEBUG00000010133	pspc1	78	48.822	ENSMUSG00000021938	Pspc1	83	44.898	Mus_musculus
ENSEBUG00000010133	pspc1	78	48.822	MGP_PahariEiJ_G0030359	Pspc1	84	44.898	Mus_pahari
ENSEBUG00000010133	pspc1	78	48.822	MGP_SPRETEiJ_G0020232	Pspc1	84	44.898	Mus_spretus
ENSEBUG00000010133	pspc1	72	51.273	ENSMPUG00000013347	PSPC1	62	44.798	Mustela_putorius_furo
ENSEBUG00000010133	pspc1	75	49.485	ENSMLUG00000017663	PSPC1	62	46.132	Myotis_lucifugus
ENSEBUG00000010133	pspc1	78	48.485	ENSNGAG00000011271	Pspc1	62	44.957	Nannospalax_galili
ENSEBUG00000010133	pspc1	76	46.207	ENSNBRG00000014059	pspc1	63	46.207	Neolamprologus_brichardi
ENSEBUG00000010133	pspc1	72	51.273	ENSNLEG00000001294	PSPC1	60	45.238	Nomascus_leucogenys
ENSEBUG00000010133	pspc1	75	44.483	ENSODEG00000007817	-	55	42.320	Octodon_degus
ENSEBUG00000010133	pspc1	77	45.918	ENSODEG00000019012	-	59	44.615	Octodon_degus
ENSEBUG00000010133	pspc1	77	44.746	ENSONIG00000012010	pspc1	57	43.302	Oreochromis_niloticus
ENSEBUG00000010133	pspc1	78	43.042	ENSOANG00000011381	-	59	43.042	Ornithorhynchus_anatinus
ENSEBUG00000010133	pspc1	57	52.273	ENSOANG00000009017	-	57	48.606	Ornithorhynchus_anatinus
ENSEBUG00000010133	pspc1	75	49.653	ENSOCUG00000006153	PSPC1	59	46.407	Oryctolagus_cuniculus
ENSEBUG00000010133	pspc1	72	47.273	ENSORLG00000004232	-	60	42.857	Oryzias_latipes
ENSEBUG00000010133	pspc1	72	47.636	ENSORLG00020000578	PSPC1	60	43.465	Oryzias_latipes_hni
ENSEBUG00000010133	pspc1	72	47.273	ENSORLG00015017480	pspc1	60	43.161	Oryzias_latipes_hsok
ENSEBUG00000010133	pspc1	78	49.158	ENSOGAG00000012643	PSPC1	59	45.833	Otolemur_garnettii
ENSEBUG00000010133	pspc1	72	50.909	ENSOARG00000014163	PSPC1	57	48.185	Ovis_aries
ENSEBUG00000010133	pspc1	72	51.273	ENSPPAG00000009836	PSPC1	79	48.366	Pan_paniscus
ENSEBUG00000010133	pspc1	82	47.302	ENSPPRG00000008833	PSPC1	62	45.087	Panthera_pardus
ENSEBUG00000010133	pspc1	76	48.973	ENSPTRG00000005677	PSPC1	84	45.963	Pan_troglodytes
ENSEBUG00000010133	pspc1	72	51.273	ENSPANG00000001992	PSPC1	85	45.536	Papio_anubis
ENSEBUG00000010133	pspc1	73	48.571	ENSPKIG00000003578	pspc1	55	46.732	Paramormyrops_kingsleyae
ENSEBUG00000010133	pspc1	72	50.182	ENSPSIG00000005168	PSPC1	54	47.386	Pelodiscus_sinensis
ENSEBUG00000010133	pspc1	76	45.548	ENSPMGG00000015135	pspc1	81	43.963	Periophthalmus_magnuspinnatus
ENSEBUG00000010133	pspc1	78	48.822	ENSPEMG00000015214	Pspc1	58	46.341	Peromyscus_maniculatus_bairdii
ENSEBUG00000010133	pspc1	79	47.604	ENSPMAG00000004618	pspc1	92	46.809	Petromyzon_marinus
ENSEBUG00000010133	pspc1	78	48.485	ENSPCIG00000017680	PSPC1	60	45.238	Phascolarctos_cinereus
ENSEBUG00000010133	pspc1	76	48.276	ENSPFOG00000003362	pspc1	58	45.511	Poecilia_formosa
ENSEBUG00000010133	pspc1	76	48.276	ENSPLAG00000011540	pspc1	58	45.511	Poecilia_latipinna
ENSEBUG00000010133	pspc1	76	48.276	ENSPMEG00000008322	pspc1	58	45.511	Poecilia_mexicana
ENSEBUG00000010133	pspc1	76	48.621	ENSPREG00000007786	pspc1	58	45.820	Poecilia_reticulata
ENSEBUG00000010133	pspc1	72	51.273	ENSPPYG00000005186	PSPC1	64	46.154	Pongo_abelii
ENSEBUG00000010133	pspc1	78	48.822	ENSPCOG00000014364	PSPC1	60	46.341	Propithecus_coquereli
ENSEBUG00000010133	pspc1	72	50.909	ENSPVAG00000005036	PSPC1	61	45.087	Pteropus_vampyrus
ENSEBUG00000010133	pspc1	76	45.517	ENSPNYG00000008893	pspc1	55	45.517	Pundamilia_nyererei
ENSEBUG00000010133	pspc1	75	48.084	ENSPNAG00000016511	pspc1	62	46.006	Pygocentrus_nattereri
ENSEBUG00000010133	pspc1	78	48.822	ENSRNOG00000020782	Pspc1	65	46.341	Rattus_norvegicus
ENSEBUG00000010133	pspc1	80	47.541	ENSRBIG00000036057	PSPC1	87	45.238	Rhinopithecus_bieti
ENSEBUG00000010133	pspc1	78	48.485	ENSRROG00000036334	PSPC1	79	45.238	Rhinopithecus_roxellana
ENSEBUG00000010133	pspc1	66	47.860	ENSSBOG00000028172	PSPC1	78	47.148	Saimiri_boliviensis_boliviensis
ENSEBUG00000010133	pspc1	84	45.538	ENSSHAG00000004696	PSPC1	59	44.745	Sarcophilus_harrisii
ENSEBUG00000010133	pspc1	74	48.582	ENSSFOG00015001395	pspc1	62	46.006	Scleropages_formosus
ENSEBUG00000010133	pspc1	72	45.455	ENSSMAG00000001761	pspc1	70	43.464	Scophthalmus_maximus
ENSEBUG00000010133	pspc1	74	47.518	ENSSDUG00000010651	pspc1	54	44.860	Seriola_dumerili
ENSEBUG00000010133	pspc1	74	47.872	ENSSLDG00000004284	pspc1	54	47.586	Seriola_lalandi_dorsalis
ENSEBUG00000010133	pspc1	72	51.273	ENSSARG00000000888	PSPC1	55	48.254	Sorex_araneus
ENSEBUG00000010133	pspc1	72	51.636	ENSSPUG00000008550	PSPC1	50	51.636	Sphenodon_punctatus
ENSEBUG00000010133	pspc1	79	44.371	ENSSPAG00000001921	pspc1	61	43.020	Stegastes_partitus
ENSEBUG00000010133	pspc1	72	50.909	ENSSSCG00000009569	PSPC1	77	46.154	Sus_scrofa
ENSEBUG00000010133	pspc1	72	51.273	ENSTGUG00000011295	PSPC1	60	48.366	Taeniopygia_guttata
ENSEBUG00000010133	pspc1	76	43.686	ENSTRUG00000011335	pspc1	58	41.667	Takifugu_rubripes
ENSEBUG00000010133	pspc1	76	43.493	ENSTNIG00000010358	pspc1	68	40.974	Tetraodon_nigroviridis
ENSEBUG00000010133	pspc1	71	46.324	ENSTBEG00000002361	PSPC1	53	43.960	Tupaia_belangeri
ENSEBUG00000010133	pspc1	84	46.646	ENSTTRG00000003343	PSPC1	64	44.568	Tursiops_truncatus
ENSEBUG00000010133	pspc1	82	47.302	ENSUAMG00000012309	PSPC1	92	45.087	Ursus_americanus
ENSEBUG00000010133	pspc1	80	47.869	ENSUMAG00000013993	PSPC1	87	45.536	Ursus_maritimus
ENSEBUG00000010133	pspc1	57	52.273	ENSVPAG00000010029	PSPC1	57	48.606	Vicugna_pacos
ENSEBUG00000010133	pspc1	72	51.273	ENSVVUG00000006414	PSPC1	84	45.087	Vulpes_vulpes
ENSEBUG00000010133	pspc1	76	48.630	ENSXCOG00000017438	pspc1	78	43.380	Xiphophorus_couchianus
ENSEBUG00000010133	pspc1	76	48.288	ENSXMAG00000007929	pspc1	70	45.511	Xiphophorus_maculatus