EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000010929 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 24763 bases
Position: chrFYBX02009730.1:931101-955863
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000017486	TUDOR	PF00567.24	0.00013	1	1
ENSEBUP00000017486	SMN	PF06003.12	2.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000018062	-	5133	-	ENSEBUP00000017486	241 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000010929's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000010929's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000010929	smndc1	100	70.954	ENSG00000119953	SMNDC1	100	70.954	Homo_sapiens
ENSEBUG00000010929	smndc1	100	68.880	ENSAPOG00000021772	smndc1	100	67.635	Acanthochromis_polyacanthus
ENSEBUG00000010929	smndc1	100	70.954	ENSAMEG00000005251	SMNDC1	100	70.954	Ailuropoda_melanoleuca
ENSEBUG00000010929	smndc1	100	70.124	ENSACIG00000004819	smndc1	100	68.465	Amphilophus_citrinellus
ENSEBUG00000010929	smndc1	100	68.465	ENSAOCG00000017869	smndc1	100	67.220	Amphiprion_ocellaris
ENSEBUG00000010929	smndc1	100	68.465	ENSAPEG00000007752	smndc1	100	67.220	Amphiprion_percula
ENSEBUG00000010929	smndc1	100	70.124	ENSATEG00000006830	smndc1	100	68.465	Anabas_testudineus
ENSEBUG00000010929	smndc1	83	72.139	ENSAPLG00000004322	SMNDC1	100	72.637	Anas_platyrhynchos
ENSEBUG00000010929	smndc1	100	71.369	ENSACAG00000005983	SMNDC1	100	71.784	Anolis_carolinensis
ENSEBUG00000010929	smndc1	100	70.954	ENSANAG00000032875	SMNDC1	100	70.954	Aotus_nancymaae
ENSEBUG00000010929	smndc1	100	69.295	ENSACLG00000016360	smndc1	100	67.635	Astatotilapia_calliptera
ENSEBUG00000010929	smndc1	100	68.880	ENSAMXG00000020310	smndc1	100	68.050	Astyanax_mexicanus
ENSEBUG00000010929	smndc1	100	70.954	ENSBTAG00000000551	SMNDC1	100	70.954	Bos_taurus
ENSEBUG00000010929	smndc1	100	70.954	ENSCJAG00000018624	SMNDC1	100	70.954	Callithrix_jacchus
ENSEBUG00000010929	smndc1	100	70.954	ENSCAFG00000010720	SMNDC1	100	70.954	Canis_familiaris
ENSEBUG00000010929	smndc1	100	70.954	ENSCAFG00020011913	SMNDC1	100	70.954	Canis_lupus_dingo
ENSEBUG00000010929	smndc1	100	70.954	ENSCHIG00000010604	SMNDC1	100	70.954	Capra_hircus
ENSEBUG00000010929	smndc1	100	70.954	ENSTSYG00000026454	SMNDC1	100	70.954	Carlito_syrichta
ENSEBUG00000010929	smndc1	85	68.137	ENSCAPG00000009132	SMNDC1	100	68.137	Cavia_aperea
ENSEBUG00000010929	smndc1	100	71.369	ENSCPOG00000031666	SMNDC1	100	71.369	Cavia_porcellus
ENSEBUG00000010929	smndc1	100	70.954	ENSCCAG00000021793	SMNDC1	100	70.954	Cebus_capucinus
ENSEBUG00000010929	smndc1	100	70.539	ENSCATG00000035910	SMNDC1	100	70.539	Cercocebus_atys
ENSEBUG00000010929	smndc1	100	71.784	ENSCLAG00000002838	SMNDC1	100	71.784	Chinchilla_lanigera
ENSEBUG00000010929	smndc1	100	70.954	ENSCSAG00000005169	SMNDC1	100	70.954	Chlorocebus_sabaeus
ENSEBUG00000010929	smndc1	81	66.837	ENSCHOG00000002936	SMNDC1	100	66.837	Choloepus_hoffmanni
ENSEBUG00000010929	smndc1	100	70.954	ENSCPBG00000012837	SMNDC1	100	71.369	Chrysemys_picta_bellii
ENSEBUG00000010929	smndc1	100	70.954	ENSCANG00000031720	-	100	70.954	Colobus_angolensis_palliatus
ENSEBUG00000010929	smndc1	100	54.357	ENSCANG00000036994	-	100	54.357	Colobus_angolensis_palliatus
ENSEBUG00000010929	smndc1	100	65.560	ENSCANG00000034620	-	100	65.975	Colobus_angolensis_palliatus
ENSEBUG00000010929	smndc1	100	71.784	ENSCGRG00001012973	Smndc1	100	71.784	Cricetulus_griseus_chok1gshd
ENSEBUG00000010929	smndc1	100	71.784	ENSCGRG00000012396	Smndc1	100	71.784	Cricetulus_griseus_crigri
ENSEBUG00000010929	smndc1	100	68.880	ENSCSEG00000015621	smndc1	100	67.635	Cynoglossus_semilaevis
ENSEBUG00000010929	smndc1	100	67.635	ENSCVAG00000020432	smndc1	100	67.635	Cyprinodon_variegatus
ENSEBUG00000010929	smndc1	100	70.954	ENSDARG00000056235	smndc1	100	68.880	Danio_rerio
ENSEBUG00000010929	smndc1	100	70.954	ENSDNOG00000016387	SMNDC1	83	70.954	Dasypus_novemcinctus
ENSEBUG00000010929	smndc1	100	70.954	ENSDORG00000023715	Smndc1	100	70.954	Dipodomys_ordii
ENSEBUG00000010929	smndc1	97	41.016	FBgn0039977	CG17454	98	41.406	Drosophila_melanogaster
ENSEBUG00000010929	smndc1	100	70.954	ENSEASG00005014930	SMNDC1	100	70.954	Equus_asinus_asinus
ENSEBUG00000010929	smndc1	100	70.954	ENSECAG00000029973	SMNDC1	100	70.954	Equus_caballus
ENSEBUG00000010929	smndc1	60	82.292	ENSEEUG00000013407	-	72	82.292	Erinaceus_europaeus
ENSEBUG00000010929	smndc1	100	65.975	ENSELUG00000000227	smndc1	100	64.315	Esox_lucius
ENSEBUG00000010929	smndc1	100	70.954	ENSFCAG00000027353	SMNDC1	100	70.954	Felis_catus
ENSEBUG00000010929	smndc1	100	71.784	ENSFALG00000002306	SMNDC1	100	72.199	Ficedula_albicollis
ENSEBUG00000010929	smndc1	100	71.369	ENSFDAG00000006468	SMNDC1	100	71.369	Fukomys_damarensis
ENSEBUG00000010929	smndc1	100	68.050	ENSFHEG00000020150	smndc1	100	66.390	Fundulus_heteroclitus
ENSEBUG00000010929	smndc1	100	65.560	ENSGMOG00000016585	smndc1	100	64.315	Gadus_morhua
ENSEBUG00000010929	smndc1	100	71.784	ENSGALG00000008561	SMNDC1	100	72.199	Gallus_gallus
ENSEBUG00000010929	smndc1	100	69.295	ENSGAFG00000011582	smndc1	100	67.220	Gambusia_affinis
ENSEBUG00000010929	smndc1	100	67.635	ENSGACG00000009468	smndc1	100	66.390	Gasterosteus_aculeatus
ENSEBUG00000010929	smndc1	100	70.954	ENSGAGG00000024547	SMNDC1	100	71.369	Gopherus_agassizii
ENSEBUG00000010929	smndc1	100	70.954	ENSGGOG00000010071	SMNDC1	100	70.954	Gorilla_gorilla
ENSEBUG00000010929	smndc1	100	69.295	ENSHBUG00000017596	smndc1	100	67.635	Haplochromis_burtoni
ENSEBUG00000010929	smndc1	100	50.607	ENSHGLG00000001157	-	100	48.988	Heterocephalus_glaber_female
ENSEBUG00000010929	smndc1	100	71.369	ENSHGLG00000013390	-	100	71.369	Heterocephalus_glaber_female
ENSEBUG00000010929	smndc1	100	71.369	ENSHGLG00100004814	-	100	71.369	Heterocephalus_glaber_male
ENSEBUG00000010929	smndc1	100	56.275	ENSHGLG00100004278	-	100	55.466	Heterocephalus_glaber_male
ENSEBUG00000010929	smndc1	100	64.463	ENSHCOG00000000783	smndc1	100	64.463	Hippocampus_comes
ENSEBUG00000010929	smndc1	100	68.050	ENSIPUG00000004217	smndc1	100	66.390	Ictalurus_punctatus
ENSEBUG00000010929	smndc1	100	70.954	ENSSTOG00000006088	SMNDC1	100	70.954	Ictidomys_tridecemlineatus
ENSEBUG00000010929	smndc1	100	71.369	ENSJJAG00000019974	Smndc1	100	71.369	Jaculus_jaculus
ENSEBUG00000010929	smndc1	100	67.220	ENSKMAG00000020134	smndc1	100	67.220	Kryptolebias_marmoratus
ENSEBUG00000010929	smndc1	100	68.724	ENSLBEG00000004598	smndc1	100	68.050	Labrus_bergylta
ENSEBUG00000010929	smndc1	100	70.370	ENSLACG00000007784	SMNDC1	100	68.880	Latimeria_chalumnae
ENSEBUG00000010929	smndc1	100	72.614	ENSLOCG00000012355	smndc1	100	72.614	Lepisosteus_oculatus
ENSEBUG00000010929	smndc1	100	71.369	ENSLAFG00000014353	SMNDC1	100	71.369	Loxodonta_africana
ENSEBUG00000010929	smndc1	100	57.261	ENSMFAG00000038381	-	100	56.432	Macaca_fascicularis
ENSEBUG00000010929	smndc1	100	70.954	ENSMFAG00000002433	-	100	70.954	Macaca_fascicularis
ENSEBUG00000010929	smndc1	100	70.954	ENSMMUG00000007775	SMNDC1	100	70.954	Macaca_mulatta
ENSEBUG00000010929	smndc1	100	57.261	ENSMMUG00000045875	-	100	56.432	Macaca_mulatta
ENSEBUG00000010929	smndc1	100	62.656	ENSMNEG00000033853	-	100	62.656	Macaca_nemestrina
ENSEBUG00000010929	smndc1	100	70.954	ENSMNEG00000042963	-	100	70.954	Macaca_nemestrina
ENSEBUG00000010929	smndc1	100	65.289	ENSMLEG00000040236	SMNDC1	100	64.876	Mandrillus_leucophaeus
ENSEBUG00000010929	smndc1	90	64.352	ENSMAMG00000018233	smndc1	87	62.963	Mastacembelus_armatus
ENSEBUG00000010929	smndc1	100	69.295	ENSMZEG00005027510	smndc1	100	67.635	Maylandia_zebra
ENSEBUG00000010929	smndc1	84	71.921	ENSMGAG00000010777	SMNDC1	84	72.906	Meleagris_gallopavo
ENSEBUG00000010929	smndc1	99	55.417	ENSMAUG00000005459	-	93	58.333	Mesocricetus_auratus
ENSEBUG00000010929	smndc1	100	70.954	ENSMAUG00000012243	-	100	70.954	Mesocricetus_auratus
ENSEBUG00000010929	smndc1	100	71.369	ENSMICG00000027336	-	100	71.369	Microcebus_murinus
ENSEBUG00000010929	smndc1	100	61.411	ENSMICG00000031640	-	100	59.336	Microcebus_murinus
ENSEBUG00000010929	smndc1	100	70.539	ENSMOCG00000002458	Smndc1	100	70.539	Microtus_ochrogaster
ENSEBUG00000010929	smndc1	100	66.805	ENSMMOG00000008856	smndc1	100	65.975	Mola_mola
ENSEBUG00000010929	smndc1	100	70.954	ENSMODG00000010542	SMNDC1	100	70.954	Monodelphis_domestica
ENSEBUG00000010929	smndc1	100	69.710	ENSMALG00000017598	smndc1	100	68.465	Monopterus_albus
ENSEBUG00000010929	smndc1	100	71.369	MGP_CAROLIEiJ_G0023072	Smndc1	100	71.369	Mus_caroli
ENSEBUG00000010929	smndc1	100	70.954	ENSMUSG00000025024	Smndc1	100	70.954	Mus_musculus
ENSEBUG00000010929	smndc1	100	70.954	MGP_PahariEiJ_G0014560	Smndc1	100	70.954	Mus_pahari
ENSEBUG00000010929	smndc1	100	70.954	MGP_SPRETEiJ_G0023993	Smndc1	100	70.954	Mus_spretus
ENSEBUG00000010929	smndc1	100	70.954	ENSMPUG00000002089	SMNDC1	100	70.954	Mustela_putorius_furo
ENSEBUG00000010929	smndc1	100	70.954	ENSMLUG00000016007	SMNDC1	100	70.954	Myotis_lucifugus
ENSEBUG00000010929	smndc1	100	71.369	ENSNGAG00000006833	Smndc1	100	71.369	Nannospalax_galili
ENSEBUG00000010929	smndc1	100	69.295	ENSNBRG00000017089	smndc1	100	67.635	Neolamprologus_brichardi
ENSEBUG00000010929	smndc1	100	70.954	ENSNLEG00000015471	SMNDC1	100	70.954	Nomascus_leucogenys
ENSEBUG00000010929	smndc1	75	53.333	ENSMEUG00000010120	-	99	50.990	Notamacropus_eugenii
ENSEBUG00000010929	smndc1	100	71.369	ENSOPRG00000015348	SMNDC1	100	71.369	Ochotona_princeps
ENSEBUG00000010929	smndc1	100	48.963	ENSODEG00000007594	-	100	47.303	Octodon_degus
ENSEBUG00000010929	smndc1	100	69.295	ENSONIG00000000434	smndc1	100	67.635	Oreochromis_niloticus
ENSEBUG00000010929	smndc1	100	71.784	ENSOANG00000001598	SMNDC1	100	71.784	Ornithorhynchus_anatinus
ENSEBUG00000010929	smndc1	100	52.282	ENSOCUG00000012274	-	100	54.357	Oryctolagus_cuniculus
ENSEBUG00000010929	smndc1	100	70.954	ENSOCUG00000008145	-	100	70.954	Oryctolagus_cuniculus
ENSEBUG00000010929	smndc1	100	67.220	ENSORLG00000005934	smndc1	95	67.220	Oryzias_latipes
ENSEBUG00000010929	smndc1	100	67.220	ENSORLG00020008796	smndc1	95	67.220	Oryzias_latipes_hni
ENSEBUG00000010929	smndc1	100	67.220	ENSORLG00015013666	smndc1	100	67.220	Oryzias_latipes_hsok
ENSEBUG00000010929	smndc1	100	65.145	ENSOMEG00000007590	smndc1	100	65.145	Oryzias_melastigma
ENSEBUG00000010929	smndc1	100	70.954	ENSOGAG00000000571	SMNDC1	100	70.954	Otolemur_garnettii
ENSEBUG00000010929	smndc1	100	70.954	ENSOARG00000009500	SMNDC1	100	70.954	Ovis_aries
ENSEBUG00000010929	smndc1	100	70.954	ENSPPAG00000027815	SMNDC1	100	70.954	Pan_paniscus
ENSEBUG00000010929	smndc1	100	70.954	ENSPPRG00000013749	SMNDC1	100	70.954	Panthera_pardus
ENSEBUG00000010929	smndc1	100	70.954	ENSPTIG00000011451	SMNDC1	100	70.954	Panthera_tigris_altaica
ENSEBUG00000010929	smndc1	100	70.954	ENSPTRG00000002937	SMNDC1	100	70.954	Pan_troglodytes
ENSEBUG00000010929	smndc1	100	66.390	ENSPANG00000031346	-	100	66.390	Papio_anubis
ENSEBUG00000010929	smndc1	100	70.954	ENSPANG00000020805	-	100	70.954	Papio_anubis
ENSEBUG00000010929	smndc1	100	68.880	ENSPKIG00000017164	smndc1	100	68.880	Paramormyrops_kingsleyae
ENSEBUG00000010929	smndc1	100	70.954	ENSPSIG00000012257	SMNDC1	100	71.369	Pelodiscus_sinensis
ENSEBUG00000010929	smndc1	100	65.574	ENSPMGG00000015651	smndc1	100	65.145	Periophthalmus_magnuspinnatus
ENSEBUG00000010929	smndc1	100	70.954	ENSPEMG00000022058	Smndc1	100	70.954	Peromyscus_maniculatus_bairdii
ENSEBUG00000010929	smndc1	100	73.444	ENSPMAG00000007705	smndc1	100	73.444	Petromyzon_marinus
ENSEBUG00000010929	smndc1	97	54.936	ENSPCIG00000009693	-	100	54.936	Phascolarctos_cinereus
ENSEBUG00000010929	smndc1	100	70.954	ENSPCIG00000018419	SMNDC1	100	70.954	Phascolarctos_cinereus
ENSEBUG00000010929	smndc1	100	68.880	ENSPFOG00000017113	smndc1	100	67.220	Poecilia_formosa
ENSEBUG00000010929	smndc1	100	68.880	ENSPLAG00000010372	smndc1	100	67.220	Poecilia_latipinna
ENSEBUG00000010929	smndc1	100	68.465	ENSPMEG00000012288	smndc1	100	66.805	Poecilia_mexicana
ENSEBUG00000010929	smndc1	100	69.710	ENSPREG00000012279	smndc1	100	68.050	Poecilia_reticulata
ENSEBUG00000010929	smndc1	100	70.954	ENSPPYG00000002643	SMNDC1	100	70.954	Pongo_abelii
ENSEBUG00000010929	smndc1	81	67.857	ENSPCAG00000016183	SMNDC1	100	67.857	Procavia_capensis
ENSEBUG00000010929	smndc1	100	70.954	ENSPCOG00000024343	SMNDC1	100	70.954	Propithecus_coquereli
ENSEBUG00000010929	smndc1	76	85.417	ENSPVAG00000004368	SMNDC1	77	85.417	Pteropus_vampyrus
ENSEBUG00000010929	smndc1	83	68.657	ENSPNYG00000024093	smndc1	86	66.667	Pundamilia_nyererei
ENSEBUG00000010929	smndc1	100	68.465	ENSPNAG00000025285	smndc1	100	67.220	Pygocentrus_nattereri
ENSEBUG00000010929	smndc1	100	71.369	ENSRNOG00000014833	Smndc1	100	71.369	Rattus_norvegicus
ENSEBUG00000010929	smndc1	100	56.846	ENSRBIG00000032452	-	100	56.846	Rhinopithecus_bieti
ENSEBUG00000010929	smndc1	100	70.954	ENSRBIG00000000224	-	100	70.954	Rhinopithecus_bieti
ENSEBUG00000010929	smndc1	100	57.261	ENSRROG00000039125	-	100	57.261	Rhinopithecus_roxellana
ENSEBUG00000010929	smndc1	100	70.954	ENSRROG00000044992	-	100	70.954	Rhinopithecus_roxellana
ENSEBUG00000010929	smndc1	100	70.954	ENSSBOG00000026789	SMNDC1	100	70.954	Saimiri_boliviensis_boliviensis
ENSEBUG00000010929	smndc1	100	70.954	ENSSHAG00000015189	SMNDC1	100	70.954	Sarcophilus_harrisii
ENSEBUG00000010929	smndc1	100	68.880	ENSSFOG00015008311	smndc1	100	68.880	Scleropages_formosus
ENSEBUG00000010929	smndc1	100	68.880	ENSSMAG00000020118	smndc1	100	67.220	Scophthalmus_maximus
ENSEBUG00000010929	smndc1	100	69.710	ENSSDUG00000015330	smndc1	100	68.465	Seriola_dumerili
ENSEBUG00000010929	smndc1	100	69.710	ENSSLDG00000017325	smndc1	100	68.465	Seriola_lalandi_dorsalis
ENSEBUG00000010929	smndc1	100	71.369	ENSSARG00000006063	SMNDC1	100	71.369	Sorex_araneus
ENSEBUG00000010929	smndc1	100	71.369	ENSSPUG00000004574	SMNDC1	100	71.369	Sphenodon_punctatus
ENSEBUG00000010929	smndc1	100	69.295	ENSSPAG00000000338	smndc1	100	68.050	Stegastes_partitus
ENSEBUG00000010929	smndc1	100	70.954	ENSSSCG00000030507	SMNDC1	100	70.954	Sus_scrofa
ENSEBUG00000010929	smndc1	100	71.784	ENSTGUG00000010599	SMNDC1	100	72.199	Taeniopygia_guttata
ENSEBUG00000010929	smndc1	100	65.975	ENSTRUG00000023281	smndc1	100	65.145	Takifugu_rubripes
ENSEBUG00000010929	smndc1	100	67.635	ENSTNIG00000013331	smndc1	100	66.805	Tetraodon_nigroviridis
ENSEBUG00000010929	smndc1	100	71.369	ENSTBEG00000014337	SMNDC1	100	71.369	Tupaia_belangeri
ENSEBUG00000010929	smndc1	100	70.954	ENSUAMG00000008142	SMNDC1	100	70.954	Ursus_americanus
ENSEBUG00000010929	smndc1	100	70.954	ENSUMAG00000023722	SMNDC1	100	70.954	Ursus_maritimus
ENSEBUG00000010929	smndc1	83	71.642	ENSVPAG00000003402	SMNDC1	100	71.642	Vicugna_pacos
ENSEBUG00000010929	smndc1	100	70.954	ENSVVUG00000007820	SMNDC1	100	70.954	Vulpes_vulpes
ENSEBUG00000010929	smndc1	60	60.690	ENSXETG00000015415	SMNDC1	100	59.589	Xenopus_tropicalis
ENSEBUG00000010929	smndc1	100	68.050	ENSXCOG00000009159	smndc1	100	65.975	Xiphophorus_couchianus
ENSEBUG00000010929	smndc1	100	68.880	ENSXMAG00000012755	smndc1	100	66.805	Xiphophorus_maculatus