EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000011445 (Gene tree)
Gene ID: -
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 6778 bases
Position: chrFYBX02010648.1:1025114-1031891
Accession: ZDB-GENE-020419-26
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000018325	zf-U1	PF06220.12	1.3e-08	1	1
ENSEBUP00000018360	zf-U1	PF06220.12	8.5e-08	1	1
ENSEBUP00000018333	zf-U1	PF06220.12	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000018900	-	1426	-	ENSEBUP00000018325	155 (aa)	-	-
ENSEBUT00000018909	-	2552	-	ENSEBUP00000018333	174 (aa)	-	-
ENSEBUT00000018936	-	1479	-	ENSEBUP00000018360	159 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000011445's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000011445's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000011445	snrpc	82	43.165	ENSANAG00000021444	-	76	46.774	Aotus_nancymaae
ENSEBUG00000011445	snrpc	71	41.322	ENSANAG00000021026	-	99	46.795	Aotus_nancymaae
ENSEBUG00000011445	snrpc	53	58.065	ENSANAG00000019157	-	100	54.037	Aotus_nancymaae
ENSEBUG00000011445	snrpc	92	43.210	ENSCAFG00000025525	-	99	48.765	Canis_familiaris
ENSEBUG00000011445	snrpc	98	44.848	ENSCAFG00020009944	-	93	51.534	Canis_lupus_dingo
ENSEBUG00000011445	snrpc	92	48.344	ENSCHIG00000005039	-	99	45.342	Capra_hircus
ENSEBUG00000011445	snrpc	91	41.667	ENSTSYG00000025721	-	100	44.444	Carlito_syrichta
ENSEBUG00000011445	snrpc	95	45.333	ENSCCAG00000028293	-	91	47.059	Cebus_capucinus
ENSEBUG00000011445	snrpc	69	52.066	ENSCLAG00000010242	-	66	47.706	Chinchilla_lanigera
ENSEBUG00000011445	snrpc	52	61.364	ENSDORG00000005955	Snrpc	69	52.147	Dipodomys_ordii
ENSEBUG00000011445	snrpc	52	62.069	ENSETEG00000008756	-	98	54.369	Echinops_telfairi
ENSEBUG00000011445	snrpc	92	48.125	ENSELUG00000020489	snrpc	77	51.240	Esox_lucius
ENSEBUG00000011445	snrpc	57	57.732	ENSELUG00000000815	SNRPC	90	57.639	Esox_lucius
ENSEBUG00000011445	snrpc	57	53.535	ENSHGLG00000005871	-	100	50.000	Heterocephalus_glaber_female
ENSEBUG00000011445	snrpc	92	46.541	ENSHGLG00100017764	-	100	51.553	Heterocephalus_glaber_male
ENSEBUG00000011445	snrpc	53	60.215	ENSIPUG00000024851	snrpc	100	55.901	Ictalurus_punctatus
ENSEBUG00000011445	snrpc	70	46.903	ENSMLEG00000039724	-	53	44.792	Mandrillus_leucophaeus
ENSEBUG00000011445	snrpc	92	54.054	ENSMALG00000001197	snrpc	100	56.000	Monopterus_albus
ENSEBUG00000011445	snrpc	88	32.075	ENSPPRG00000016017	-	88	36.025	Panthera_pardus
ENSEBUG00000011445	snrpc	76	37.681	ENSPPRG00000010967	-	68	44.762	Panthera_pardus
ENSEBUG00000011445	snrpc	53	56.989	ENSPKIG00000003136	snrpc	100	57.051	Paramormyrops_kingsleyae
ENSEBUG00000011445	snrpc	71	55.833	ENSPEMG00000002763	-	99	52.903	Peromyscus_maniculatus_bairdii
ENSEBUG00000011445	snrpc	88	65.000	ENSPMAG00000000602	snrpc	95	65.068	Petromyzon_marinus
ENSEBUG00000011445	snrpc	56	41.346	ENSPREG00000013017	snrpc	92	45.029	Poecilia_reticulata
ENSEBUG00000011445	snrpc	57	55.208	ENSPPYG00000029902	-	96	57.292	Pongo_abelii
ENSEBUG00000011445	snrpc	89	48.701	ENSSBOG00000023189	-	88	47.403	Saimiri_boliviensis_boliviensis
ENSEBUG00000011445	snrpc	53	58.065	ENSSFOG00015019150	snrpc	90	59.722	Scleropages_formosus
ENSEBUG00000011445	snrpc	54	61.957	ENSSARG00000008970	SNRPC	93	47.619	Sorex_araneus