EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000011902 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 98049 bases
Position: chrFYBX02010823.1:49659-147707
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000019098	SMN	PF06003.12	1.1e-65	1	1
ENSEBUP00000019107	SMN	PF06003.12	1.1e-65	1	1
ENSEBUP00000019135	SMN	PF06003.12	1.9e-65	1	1
ENSEBUP00000019122	SMN	PF06003.12	1.5e-28	1	2
ENSEBUP00000019122	SMN	PF06003.12	1.5e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000019711	-	6560	-	ENSEBUP00000019135	288 (aa)	-	-
ENSEBUT00000019684	-	6062	-	ENSEBUP00000019107	283 (aa)	-	-
ENSEBUT00000019674	-	6150	-	ENSEBUP00000019098	283 (aa)	-	-
ENSEBUT00000019698	-	5937	-	ENSEBUP00000019122	212 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000011902's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000011902's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000011902	smn1	92	39.259	ENSG00000172062	SMN1	94	40.636	Homo_sapiens
ENSEBUG00000011902	smn1	92	39.259	ENSG00000205571	SMN2	93	41.637	Homo_sapiens
ENSEBUG00000011902	smn1	96	36.482	ENSAPOG00000011324	smn1	96	35.473	Acanthochromis_polyacanthus
ENSEBUG00000011902	smn1	93	35.192	ENSACIG00000019772	-	50	45.139	Amphilophus_citrinellus
ENSEBUG00000011902	smn1	96	37.415	ENSAOCG00000024444	smn1	96	40.273	Amphiprion_ocellaris
ENSEBUG00000011902	smn1	96	37.755	ENSAPEG00000016504	smn1	96	39.932	Amphiprion_percula
ENSEBUG00000011902	smn1	51	82.609	ENSATEG00000002182	smn1	81	37.884	Anabas_testudineus
ENSEBUG00000011902	smn1	65	38.974	ENSAPLG00000010912	-	94	39.806	Anas_platyrhynchos
ENSEBUG00000011902	smn1	94	42.125	ENSACAG00000010017	-	91	41.091	Anolis_carolinensis
ENSEBUG00000011902	smn1	95	40.278	ENSANAG00000032133	-	92	40.625	Aotus_nancymaae
ENSEBUG00000011902	smn1	94	36.879	ENSACLG00000007308	smn1	90	38.811	Astatotilapia_calliptera
ENSEBUG00000011902	smn1	96	40.418	ENSAMXG00000013884	smn1	100	39.617	Astyanax_mexicanus
ENSEBUG00000011902	smn1	98	36.364	ENSBTAG00000005743	SMN2	96	38.488	Bos_taurus
ENSEBUG00000011902	smn1	92	39.630	ENSCJAG00000016290	-	92	40.418	Callithrix_jacchus
ENSEBUG00000011902	smn1	95	33.762	ENSCAFG00000007812	SMN	93	38.333	Canis_familiaris
ENSEBUG00000011902	smn1	95	32.258	ENSCAFG00020019229	-	87	38.333	Canis_lupus_dingo
ENSEBUG00000011902	smn1	95	36.678	ENSCHIG00000015559	-	91	38.732	Capra_hircus
ENSEBUG00000011902	smn1	96	37.676	ENSTSYG00000012058	-	95	39.465	Carlito_syrichta
ENSEBUG00000011902	smn1	95	38.408	ENSCPOG00000012328	-	93	38.000	Cavia_porcellus
ENSEBUG00000011902	smn1	95	37.716	ENSCPOG00000036973	-	92	37.333	Cavia_porcellus
ENSEBUG00000011902	smn1	92	39.259	ENSCCAG00000018127	-	92	40.210	Cebus_capucinus
ENSEBUG00000011902	smn1	92	38.889	ENSCATG00000037002	-	94	39.785	Cercocebus_atys
ENSEBUG00000011902	smn1	98	40.203	ENSCLAG00000000284	-	93	40.714	Chinchilla_lanigera
ENSEBUG00000011902	smn1	92	33.223	ENSCSAG00000015688	-	92	38.462	Chlorocebus_sabaeus
ENSEBUG00000011902	smn1	57	85.714	ENSCHOG00000007346	-	59	85.714	Choloepus_hoffmanni
ENSEBUG00000011902	smn1	95	41.786	ENSCPBG00000010968	-	95	39.130	Chrysemys_picta_bellii
ENSEBUG00000011902	smn1	92	40.000	ENSCANG00000038242	-	95	40.411	Colobus_angolensis_palliatus
ENSEBUG00000011902	smn1	90	41.392	ENSCANG00000033324	-	86	40.590	Colobus_angolensis_palliatus
ENSEBUG00000011902	smn1	96	39.437	ENSCGRG00001017959	-	94	37.333	Cricetulus_griseus_chok1gshd
ENSEBUG00000011902	smn1	65	36.979	ENSCGRG00001016998	-	87	35.965	Cricetulus_griseus_chok1gshd
ENSEBUG00000011902	smn1	96	39.437	ENSCGRG00000007698	Smn1	94	37.333	Cricetulus_griseus_crigri
ENSEBUG00000011902	smn1	96	37.584	ENSCVAG00000007498	smn1	96	38.312	Cyprinodon_variegatus
ENSEBUG00000011902	smn1	96	38.591	ENSDARG00000018494	smn1	98	38.339	Danio_rerio
ENSEBUG00000011902	smn1	60	40.462	ENSDNOG00000045949	-	56	44.286	Dasypus_novemcinctus
ENSEBUG00000011902	smn1	50	48.611	ENSECAG00000015215	-	93	38.462	Equus_caballus
ENSEBUG00000011902	smn1	99	40.068	ENSELUG00000018067	smn1	98	38.870	Esox_lucius
ENSEBUG00000011902	smn1	92	38.351	ENSFCAG00000028292	SMN	93	36.755	Felis_catus
ENSEBUG00000011902	smn1	91	41.445	ENSFALG00000012320	-	95	43.056	Ficedula_albicollis
ENSEBUG00000011902	smn1	98	38.926	ENSFDAG00000017683	-	94	38.339	Fukomys_damarensis
ENSEBUG00000011902	smn1	62	43.478	ENSFHEG00000018508	smn1	95	40.143	Fundulus_heteroclitus
ENSEBUG00000011902	smn1	96	36.170	ENSGMOG00000017279	smn1	94	38.516	Gadus_morhua
ENSEBUG00000011902	smn1	94	41.971	ENSGALG00000002430	SMN	95	41.045	Gallus_gallus
ENSEBUG00000011902	smn1	96	41.901	ENSGAFG00000009501	smn1	96	41.259	Gambusia_affinis
ENSEBUG00000011902	smn1	96	40.550	ENSGACG00000010584	smn1	93	41.463	Gasterosteus_aculeatus
ENSEBUG00000011902	smn1	95	38.596	ENSGAGG00000011374	-	94	40.780	Gopherus_agassizii
ENSEBUG00000011902	smn1	96	35.948	ENSGAGG00000013639	-	87	34.351	Gopherus_agassizii
ENSEBUG00000011902	smn1	90	39.924	ENSGGOG00000003872	-	94	40.000	Gorilla_gorilla
ENSEBUG00000011902	smn1	60	44.706	ENSGGOG00000026704	-	61	48.592	Gorilla_gorilla
ENSEBUG00000011902	smn1	96	38.851	ENSHBUG00000013987	smn1	96	39.456	Haplochromis_burtoni
ENSEBUG00000011902	smn1	98	39.465	ENSHGLG00000001905	-	95	38.436	Heterocephalus_glaber_female
ENSEBUG00000011902	smn1	98	37.124	ENSHGLG00000001018	-	94	37.179	Heterocephalus_glaber_female
ENSEBUG00000011902	smn1	94	39.583	ENSHGLG00100018676	-	97	38.514	Heterocephalus_glaber_male
ENSEBUG00000011902	smn1	98	37.124	ENSHGLG00100011252	-	94	37.179	Heterocephalus_glaber_male
ENSEBUG00000011902	smn1	94	36.395	ENSHCOG00000017136	smn1	89	35.517	Hippocampus_comes
ENSEBUG00000011902	smn1	96	43.706	ENSIPUG00000012580	smn1	92	37.580	Ictalurus_punctatus
ENSEBUG00000011902	smn1	50	46.528	ENSSTOG00000012288	-	95	36.054	Ictidomys_tridecemlineatus
ENSEBUG00000011902	smn1	69	76.667	ENSKMAG00000007239	smn1	96	41.356	Kryptolebias_marmoratus
ENSEBUG00000011902	smn1	60	76.667	ENSLBEG00000022550	smn1	96	39.000	Labrus_bergylta
ENSEBUG00000011902	smn1	96	32.986	ENSLACG00000009808	-	91	34.247	Latimeria_chalumnae
ENSEBUG00000011902	smn1	96	42.806	ENSLOCG00000011339	smn1	96	42.652	Lepisosteus_oculatus
ENSEBUG00000011902	smn1	55	31.138	ENSLAFG00000003425	-	99	33.125	Loxodonta_africana
ENSEBUG00000011902	smn1	92	39.630	ENSMFAG00000031523	SMN1	96	39.456	Macaca_fascicularis
ENSEBUG00000011902	smn1	92	39.209	ENSMFAG00000008812	-	88	39.855	Macaca_fascicularis
ENSEBUG00000011902	smn1	92	39.630	ENSMMUG00000020214	SMN1	94	39.796	Macaca_mulatta
ENSEBUG00000011902	smn1	92	38.849	ENSMMUG00000030594	-	88	39.493	Macaca_mulatta
ENSEBUG00000011902	smn1	58	34.254	ENSMNEG00000036423	-	70	35.196	Macaca_nemestrina
ENSEBUG00000011902	smn1	95	38.849	ENSMNEG00000035094	-	94	39.796	Macaca_nemestrina
ENSEBUG00000011902	smn1	95	38.571	ENSMLEG00000041902	-	94	39.796	Mandrillus_leucophaeus
ENSEBUG00000011902	smn1	68	39.303	ENSMAMG00000011034	smn1	96	39.057	Mastacembelus_armatus
ENSEBUG00000011902	smn1	96	38.514	ENSMZEG00005013634	smn1	96	39.116	Maylandia_zebra
ENSEBUG00000011902	smn1	65	39.894	ENSMGAG00000008889	-	93	39.086	Meleagris_gallopavo
ENSEBUG00000011902	smn1	65	41.799	ENSMAUG00000010262	Smn1	94	38.596	Mesocricetus_auratus
ENSEBUG00000011902	smn1	50	47.917	ENSMICG00000034708	-	59	45.139	Microcebus_murinus
ENSEBUG00000011902	smn1	60	43.103	ENSMOCG00000017833	Smn1	94	36.634	Microtus_ochrogaster
ENSEBUG00000011902	smn1	96	38.571	ENSMMOG00000005504	smn1	97	37.162	Mola_mola
ENSEBUG00000011902	smn1	93	39.777	ENSMODG00000001436	-	89	40.339	Monodelphis_domestica
ENSEBUG00000011902	smn1	92	39.286	MGP_CAROLIEiJ_G0018836	Smn1	93	36.455	Mus_caroli
ENSEBUG00000011902	smn1	92	39.286	ENSMUSG00000021645	Smn1	93	36.824	Mus_musculus
ENSEBUG00000011902	smn1	94	36.201	MGP_PahariEiJ_G0015911	Smn1	94	37.542	Mus_pahari
ENSEBUG00000011902	smn1	92	38.516	MGP_SPRETEiJ_G0019718	Smn1	93	36.824	Mus_spretus
ENSEBUG00000011902	smn1	94	33.115	ENSMPUG00000014470	-	94	37.037	Mustela_putorius_furo
ENSEBUG00000011902	smn1	51	48.649	ENSMLUG00000010603	-	90	39.344	Myotis_lucifugus
ENSEBUG00000011902	smn1	94	37.676	ENSNGAG00000019833	Smn1	93	38.591	Nannospalax_galili
ENSEBUG00000011902	smn1	96	38.983	ENSNBRG00000023000	smn1	96	39.590	Neolamprologus_brichardi
ENSEBUG00000011902	smn1	93	39.146	ENSNLEG00000004454	-	94	41.429	Nomascus_leucogenys
ENSEBUG00000011902	smn1	63	39.459	ENSMEUG00000011393	-	91	37.991	Notamacropus_eugenii
ENSEBUG00000011902	smn1	89	40.370	ENSOPRG00000002015	-	99	39.552	Ochotona_princeps
ENSEBUG00000011902	smn1	53	45.806	ENSODEG00000015976	-	93	38.644	Octodon_degus
ENSEBUG00000011902	smn1	72	40.097	ENSONIG00000011799	smn1	96	39.057	Oreochromis_niloticus
ENSEBUG00000011902	smn1	92	40.221	ENSOANG00000001626	-	91	40.830	Ornithorhynchus_anatinus
ENSEBUG00000011902	smn1	95	40.143	ENSOCUG00000017097	-	93	37.542	Oryctolagus_cuniculus
ENSEBUG00000011902	smn1	60	42.938	ENSORLG00000010552	smn1	96	37.288	Oryzias_latipes
ENSEBUG00000011902	smn1	96	40.714	ENSORLG00020007936	smn1	96	40.210	Oryzias_latipes_hni
ENSEBUG00000011902	smn1	67	39.487	ENSORLG00015022425	smn1	96	37.415	Oryzias_latipes_hsok
ENSEBUG00000011902	smn1	51	42.568	ENSOMEG00000007824	smn1	96	38.095	Oryzias_melastigma
ENSEBUG00000011902	smn1	50	41.667	ENSOGAG00000031414	-	93	36.577	Otolemur_garnettii
ENSEBUG00000011902	smn1	94	40.357	ENSOARG00000005425	-	96	38.849	Ovis_aries
ENSEBUG00000011902	smn1	92	39.630	ENSPPAG00000036640	-	94	40.070	Pan_paniscus
ENSEBUG00000011902	smn1	92	37.638	ENSPPRG00000005575	-	93	36.755	Panthera_pardus
ENSEBUG00000011902	smn1	92	38.489	ENSPTIG00000007745	-	93	36.755	Panthera_tigris_altaica
ENSEBUG00000011902	smn1	93	38.966	ENSPTRG00000016955	-	94	40.972	Pan_troglodytes
ENSEBUG00000011902	smn1	96	38.014	ENSPANG00000000253	-	93	37.241	Papio_anubis
ENSEBUG00000011902	smn1	92	39.630	ENSPANG00000013601	-	91	40.074	Papio_anubis
ENSEBUG00000011902	smn1	96	37.544	ENSPKIG00000011096	smn1	96	39.286	Paramormyrops_kingsleyae
ENSEBUG00000011902	smn1	94	40.426	ENSPSIG00000014787	-	84	41.455	Pelodiscus_sinensis
ENSEBUG00000011902	smn1	96	37.113	ENSPMGG00000012285	smn1	97	40.357	Periophthalmus_magnuspinnatus
ENSEBUG00000011902	smn1	94	36.140	ENSPMAG00000005004	smn1	96	32.087	Petromyzon_marinus
ENSEBUG00000011902	smn1	93	40.520	ENSPCIG00000025764	-	90	41.356	Phascolarctos_cinereus
ENSEBUG00000011902	smn1	96	39.000	ENSPFOG00000007786	smn1	96	38.644	Poecilia_formosa
ENSEBUG00000011902	smn1	96	41.197	ENSPLAG00000012071	smn1	96	39.161	Poecilia_latipinna
ENSEBUG00000011902	smn1	96	40.845	ENSPMEG00000017085	smn1	96	38.811	Poecilia_mexicana
ENSEBUG00000011902	smn1	96	42.254	ENSPREG00000005824	smn1	96	39.510	Poecilia_reticulata
ENSEBUG00000011902	smn1	94	37.282	ENSPPYG00000015533	-	96	40.636	Pongo_abelii
ENSEBUG00000011902	smn1	88	30.242	ENSPPYG00000019189	-	64	35.507	Pongo_abelii
ENSEBUG00000011902	smn1	51	47.586	ENSPVAG00000005977	-	92	38.000	Pteropus_vampyrus
ENSEBUG00000011902	smn1	96	38.983	ENSPNYG00000014148	smn1	96	39.590	Pundamilia_nyererei
ENSEBUG00000011902	smn1	96	39.726	ENSPNAG00000014007	smn1	87	41.554	Pygocentrus_nattereri
ENSEBUG00000011902	smn1	95	37.847	ENSRNOG00000018067	Smn1	93	36.120	Rattus_norvegicus
ENSEBUG00000011902	smn1	93	36.364	ENSRBIG00000036775	-	89	36.426	Rhinopithecus_bieti
ENSEBUG00000011902	smn1	92	40.000	ENSRBIG00000037052	-	91	40.441	Rhinopithecus_bieti
ENSEBUG00000011902	smn1	95	35.154	ENSRROG00000031088	-	91	36.429	Rhinopithecus_roxellana
ENSEBUG00000011902	smn1	92	40.000	ENSRROG00000039399	-	94	39.456	Rhinopithecus_roxellana
ENSEBUG00000011902	smn1	92	40.143	ENSSBOG00000011665	-	91	40.074	Saimiri_boliviensis_boliviensis
ENSEBUG00000011902	smn1	51	45.578	ENSSBOG00000020112	-	88	38.768	Saimiri_boliviensis_boliviensis
ENSEBUG00000011902	smn1	93	40.892	ENSSHAG00000001499	-	96	41.611	Sarcophilus_harrisii
ENSEBUG00000011902	smn1	76	60.870	ENSSFOG00015015507	smn1	96	41.754	Scleropages_formosus
ENSEBUG00000011902	smn1	96	35.235	ENSSMAG00000007922	smn1	96	34.797	Scophthalmus_maximus
ENSEBUG00000011902	smn1	72	72.414	ENSSPUG00000000373	-	90	39.085	Sphenodon_punctatus
ENSEBUG00000011902	smn1	96	40.636	ENSSPAG00000004345	smn1	96	41.135	Stegastes_partitus
ENSEBUG00000011902	smn1	90	34.694	ENSSSCG00000029127	-	86	35.567	Sus_scrofa
ENSEBUG00000011902	smn1	50	46.207	ENSSSCG00000016970	-	92	37.542	Sus_scrofa
ENSEBUG00000011902	smn1	92	38.516	ENSTGUG00000001548	-	95	40.690	Taeniopygia_guttata
ENSEBUG00000011902	smn1	96	39.103	ENSTNIG00000009892	smn1	96	40.136	Tetraodon_nigroviridis
ENSEBUG00000011902	smn1	77	36.199	ENSTBEG00000002399	-	63	45.139	Tupaia_belangeri
ENSEBUG00000011902	smn1	92	32.997	ENSTTRG00000005080	-	90	37.410	Tursiops_truncatus
ENSEBUG00000011902	smn1	52	44.079	ENSUAMG00000024947	-	51	44.079	Ursus_americanus
ENSEBUG00000011902	smn1	57	80.952	ENSVPAG00000009887	-	67	56.364	Vicugna_pacos
ENSEBUG00000011902	smn1	95	33.762	ENSVVUG00000006934	-	93	38.333	Vulpes_vulpes
ENSEBUG00000011902	smn1	94	41.727	ENSXETG00000018189	smn2	90	37.667	Xenopus_tropicalis
ENSEBUG00000011902	smn1	52	61.404	ENSXETG00000004912	-	79	61.404	Xenopus_tropicalis
ENSEBUG00000011902	smn1	96	41.901	ENSXMAG00000001521	smn1	96	39.510	Xiphophorus_maculatus