EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000011906 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 146545 bases
Position: chrFYBX02010340.1:1569778-1716322
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000019109	ResIII	PF04851.15	1.3e-05	1	1
ENSEBUP00000019138	ResIII	PF04851.15	1.3e-05	1	1
ENSEBUP00000019166	ResIII	PF04851.15	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000019685	SMARCAL1-201	7314	-	ENSEBUP00000019109	719 (aa)	-	-
ENSEBUT00000019714	SMARCAL1-202	7206	-	ENSEBUP00000019138	719 (aa)	-	-
ENSEBUT00000019742	SMARCAL1-203	7445	-	ENSEBUP00000019166	719 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000011906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000011906's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000011906	SMARCAL1	99	43.025	ENSG00000138375	SMARCAL1	99	57.764	Homo_sapiens
ENSEBUG00000011906	SMARCAL1	72	55.641	ENSAPOG00000020156	SMARCAL1	57	55.641	Acanthochromis_polyacanthus
ENSEBUG00000011906	SMARCAL1	99	56.788	ENSACIG00000001500	smarcal1	80	56.788	Amphilophus_citrinellus
ENSEBUG00000011906	SMARCAL1	72	56.597	ENSAOCG00000014266	SMARCAL1	80	47.737	Amphiprion_ocellaris
ENSEBUG00000011906	SMARCAL1	73	56.214	ENSAPEG00000015861	SMARCAL1	64	56.214	Amphiprion_percula
ENSEBUG00000011906	SMARCAL1	99	45.884	ENSATEG00000020624	SMARCAL1	79	45.298	Anabas_testudineus
ENSEBUG00000011906	SMARCAL1	75	53.578	ENSAPLG00000009864	SMARCAL1	56	53.578	Anas_platyrhynchos
ENSEBUG00000011906	SMARCAL1	73	53.296	ENSACAG00000004612	SMARCAL1	54	53.296	Anolis_carolinensis
ENSEBUG00000011906	SMARCAL1	72	55.258	ENSACLG00000015990	SMARCAL1	79	46.483	Astatotilapia_calliptera
ENSEBUG00000011906	SMARCAL1	99	48.006	ENSAMXG00000003350	smarcal1	63	56.979	Astyanax_mexicanus
ENSEBUG00000011906	SMARCAL1	73	54.857	ENSCPBG00000013599	SMARCAL1	54	54.857	Chrysemys_picta_bellii
ENSEBUG00000011906	SMARCAL1	87	43.595	ENSCING00000009308	-	81	43.212	Ciona_intestinalis
ENSEBUG00000011906	SMARCAL1	73	53.920	ENSCSEG00000010785	SMARCAL1	60	53.920	Cynoglossus_semilaevis
ENSEBUG00000011906	SMARCAL1	99	48.000	ENSCVAG00000018780	SMARCAL1	78	48.133	Cyprinodon_variegatus
ENSEBUG00000011906	SMARCAL1	72	56.597	ENSELUG00000010440	-	50	56.597	Esox_lucius
ENSEBUG00000011906	SMARCAL1	72	55.641	ENSFALG00000003981	SMARCAL1	54	55.641	Ficedula_albicollis
ENSEBUG00000011906	SMARCAL1	99	47.149	ENSFHEG00000008380	SMARCAL1	78	47.441	Fundulus_heteroclitus
ENSEBUG00000011906	SMARCAL1	68	60.284	ENSGMOG00000010034	smarcal1	92	57.456	Gadus_morhua
ENSEBUG00000011906	SMARCAL1	75	54.713	ENSGALG00000011475	RPL37A	55	54.713	Gallus_gallus
ENSEBUG00000011906	SMARCAL1	69	59.762	ENSGACG00000006073	SMARCAL1	78	59.762	Gasterosteus_aculeatus
ENSEBUG00000011906	SMARCAL1	73	54.857	ENSGAGG00000015660	SMARCAL1	58	54.857	Gopherus_agassizii
ENSEBUG00000011906	SMARCAL1	99	45.612	ENSHBUG00000002973	smarcal1	79	46.483	Haplochromis_burtoni
ENSEBUG00000011906	SMARCAL1	99	48.476	ENSHCOG00000017921	smarcal1	67	55.456	Hippocampus_comes
ENSEBUG00000011906	SMARCAL1	90	47.866	ENSLBEG00000003493	smarcal1	61	54.302	Labrus_bergylta
ENSEBUG00000011906	SMARCAL1	99	49.088	ENSLBEG00000022915	smarcal1	69	53.232	Labrus_bergylta
ENSEBUG00000011906	SMARCAL1	72	54.876	ENSLACG00000010974	SMARCAL1	80	46.484	Latimeria_chalumnae
ENSEBUG00000011906	SMARCAL1	99	46.467	ENSLOCG00000009637	smarcal1	64	55.904	Lepisosteus_oculatus
ENSEBUG00000011906	SMARCAL1	99	45.753	ENSMAMG00000000828	SMARCAL1	80	46.676	Mastacembelus_armatus
ENSEBUG00000011906	SMARCAL1	72	55.258	ENSMZEG00005007660	SMARCAL1	79	46.483	Maylandia_zebra
ENSEBUG00000011906	SMARCAL1	75	55.000	ENSMGAG00000011658	SMARCAL1	57	55.000	Meleagris_gallopavo
ENSEBUG00000011906	SMARCAL1	72	52.091	ENSMMOG00000003842	smarcal1	64	52.091	Mola_mola
ENSEBUG00000011906	SMARCAL1	73	52.099	ENSMODG00000015544	SMARCAL1	55	52.099	Monodelphis_domestica
ENSEBUG00000011906	SMARCAL1	99	55.258	ENSNBRG00000016273	smarcal1	80	55.258	Neolamprologus_brichardi
ENSEBUG00000011906	SMARCAL1	99	42.424	ENSMEUG00000004395	SMARCAL1	59	52.299	Notamacropus_eugenii
ENSEBUG00000011906	SMARCAL1	99	46.019	ENSONIG00000009036	smarcal1	76	54.876	Oreochromis_niloticus
ENSEBUG00000011906	SMARCAL1	99	46.806	ENSORLG00000016455	SMARCAL1	59	55.258	Oryzias_latipes
ENSEBUG00000011906	SMARCAL1	99	46.379	ENSORLG00020001610	SMARCAL1	65	55.153	Oryzias_latipes_hni
ENSEBUG00000011906	SMARCAL1	99	47.222	ENSORLG00015001865	SMARCAL1	77	46.879	Oryzias_latipes_hsok
ENSEBUG00000011906	SMARCAL1	99	47.427	ENSOMEG00000001845	smarcal1	77	46.453	Oryzias_melastigma
ENSEBUG00000011906	SMARCAL1	99	45.479	ENSPMGG00000019092	SMARCAL1	59	55.513	Periophthalmus_magnuspinnatus
ENSEBUG00000011906	SMARCAL1	73	51.803	ENSPCIG00000022514	SMARCAL1	58	51.803	Phascolarctos_cinereus
ENSEBUG00000011906	SMARCAL1	73	56.357	ENSPFOG00000000560	SMARCAL1	62	56.357	Poecilia_formosa
ENSEBUG00000011906	SMARCAL1	73	55.977	ENSPMEG00000018146	SMARCAL1	62	55.977	Poecilia_mexicana
ENSEBUG00000011906	SMARCAL1	99	49.449	ENSPNAG00000014900	smarcal1	56	58.700	Pygocentrus_nattereri
ENSEBUG00000011906	SMARCAL1	99	41.745	ENSSHAG00000013538	SMARCAL1	78	41.723	Sarcophilus_harrisii
ENSEBUG00000011906	SMARCAL1	99	46.123	ENSSMAG00000010427	SMARCAL1	57	55.619	Scophthalmus_maximus
ENSEBUG00000011906	SMARCAL1	74	55.410	ENSSPUG00000015369	SMARCAL1	53	55.410	Sphenodon_punctatus
ENSEBUG00000011906	SMARCAL1	72	56.023	ENSSPAG00000003742	smarcal1	82	46.379	Stegastes_partitus
ENSEBUG00000011906	SMARCAL1	73	48.859	ENSSSCG00000035501	SMARCAL1	57	49.810	Sus_scrofa
ENSEBUG00000011906	SMARCAL1	72	53.831	ENSTGUG00000005079	SMARCAL1	76	54.598	Taeniopygia_guttata
ENSEBUG00000011906	SMARCAL1	72	50.577	ENSTRUG00000010701	SMARCAL1	56	50.577	Takifugu_rubripes
ENSEBUG00000011906	SMARCAL1	99	43.958	ENSTTRG00000009001	SMARCAL1	56	53.259	Tursiops_truncatus
ENSEBUG00000011906	SMARCAL1	99	46.588	ENSXETG00000000465	smarcal1	79	47.113	Xenopus_tropicalis