EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000012552 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4 (1 of many)
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 30464 bases
Position: chrFYBX02010108.1:1153338-1183801
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000020224	zf-CCCH	PF00642.24	5.1e-20	1	2
ENSEBUP00000020224	zf-CCCH	PF00642.24	5.1e-20	2	2
ENSEBUP00000020247	zf-CCCH	PF00642.24	5.1e-20	1	2
ENSEBUP00000020247	zf-CCCH	PF00642.24	5.1e-20	2	2
ENSEBUP00000020224	zf-CCHC	PF00098.23	4.9e-05	1	1
ENSEBUP00000020247	zf-CCHC	PF00098.23	4.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000020823	-	1716	-	ENSEBUP00000020247	241 (aa)	-	-
ENSEBUT00000020800	-	1896	-	ENSEBUP00000020224	241 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000012552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000012552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000012552	cpsf4	53	36.154	ENSEBUG00000015445	-	51	36.154

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000012552	cpsf4	98	70.370	ENSG00000160917	CPSF4	100	91.964	Homo_sapiens
ENSEBUG00000012552	cpsf4	62	53.107	ENSAPOG00000004921	cpsf4	99	53.107	Acanthochromis_polyacanthus
ENSEBUG00000012552	cpsf4	98	65.169	ENSAMEG00000006252	CPSF4	99	65.169	Ailuropoda_melanoleuca
ENSEBUG00000012552	cpsf4	98	69.874	ENSACIG00000009248	cpsf4	99	69.874	Amphilophus_citrinellus
ENSEBUG00000012552	cpsf4	98	64.528	ENSAOCG00000019616	cpsf4	99	64.528	Amphiprion_ocellaris
ENSEBUG00000012552	cpsf4	98	64.528	ENSAPEG00000011679	cpsf4	99	64.528	Amphiprion_percula
ENSEBUG00000012552	cpsf4	98	70.204	ENSATEG00000007010	cpsf4	99	70.204	Anabas_testudineus
ENSEBUG00000012552	cpsf4	98	65.543	ENSACAG00000012941	CPSF4	88	65.543	Anolis_carolinensis
ENSEBUG00000012552	cpsf4	98	65.169	ENSANAG00000021360	CPSF4	99	65.169	Aotus_nancymaae
ENSEBUG00000012552	cpsf4	98	70.042	ENSACLG00000010374	cpsf4	99	70.042	Astatotilapia_calliptera
ENSEBUG00000012552	cpsf4	98	64.925	ENSAMXG00000031647	cpsf4	99	64.925	Astyanax_mexicanus
ENSEBUG00000012552	cpsf4	98	70.040	ENSBTAG00000002090	CPSF4	99	71.429	Bos_taurus
ENSEBUG00000012552	cpsf4	98	65.399	ENSCJAG00000015826	CPSF4	99	65.399	Callithrix_jacchus
ENSEBUG00000012552	cpsf4	98	65.543	ENSCAFG00000015036	CPSF4	100	76.190	Canis_familiaris
ENSEBUG00000012552	cpsf4	98	61.049	ENSCAFG00020014462	CPSF4	99	61.049	Canis_lupus_dingo
ENSEBUG00000012552	cpsf4	98	65.169	ENSCHIG00000014313	CPSF4	99	65.169	Capra_hircus
ENSEBUG00000012552	cpsf4	86	67.442	ENSTSYG00000008195	-	97	68.584	Carlito_syrichta
ENSEBUG00000012552	cpsf4	98	69.758	ENSTSYG00000005712	-	99	70.968	Carlito_syrichta
ENSEBUG00000012552	cpsf4	98	63.115	ENSTSYG00000014604	-	99	63.968	Carlito_syrichta
ENSEBUG00000012552	cpsf4	77	65.278	ENSCAPG00000013881	CPSF4	86	65.278	Cavia_aperea
ENSEBUG00000012552	cpsf4	98	70.161	ENSCPOG00000001783	CPSF4	99	71.774	Cavia_porcellus
ENSEBUG00000012552	cpsf4	98	65.169	ENSCCAG00000028291	CPSF4	99	65.169	Cebus_capucinus
ENSEBUG00000012552	cpsf4	98	70.168	ENSCATG00000038440	CPSF4	99	70.168	Cercocebus_atys
ENSEBUG00000012552	cpsf4	98	65.169	ENSCLAG00000007050	CPSF4	99	65.169	Chinchilla_lanigera
ENSEBUG00000012552	cpsf4	98	65.169	ENSCSAG00000017795	CPSF4	99	65.169	Chlorocebus_sabaeus
ENSEBUG00000012552	cpsf4	69	74.096	ENSCPBG00000010269	-	100	74.096	Chrysemys_picta_bellii
ENSEBUG00000012552	cpsf4	76	65.888	ENSCPBG00000020869	CPSF4	99	65.888	Chrysemys_picta_bellii
ENSEBUG00000012552	cpsf4	95	55.952	ENSCING00000021080	-	96	56.917	Ciona_intestinalis
ENSEBUG00000012552	cpsf4	95	52.857	ENSCSAVG00000011469	-	97	52.857	Ciona_savignyi
ENSEBUG00000012552	cpsf4	98	70.711	ENSCANG00000019384	CPSF4	99	70.711	Colobus_angolensis_palliatus
ENSEBUG00000012552	cpsf4	98	70.161	ENSCGRG00001024184	Cpsf4	99	71.774	Cricetulus_griseus_chok1gshd
ENSEBUG00000012552	cpsf4	98	65.169	ENSCGRG00000013892	Cpsf4	99	65.169	Cricetulus_griseus_crigri
ENSEBUG00000012552	cpsf4	98	66.415	ENSCSEG00000019055	cpsf4	99	66.415	Cynoglossus_semilaevis
ENSEBUG00000012552	cpsf4	98	67.300	ENSCVAG00000016528	cpsf4	99	67.300	Cyprinodon_variegatus
ENSEBUG00000012552	cpsf4	98	64.312	ENSDARG00000020217	cpsf4	99	63.569	Danio_rerio
ENSEBUG00000012552	cpsf4	98	65.169	ENSDNOG00000006344	CPSF4	99	65.169	Dasypus_novemcinctus
ENSEBUG00000012552	cpsf4	77	65.116	ENSDORG00000000742	Cpsf4	99	65.116	Dipodomys_ordii
ENSEBUG00000012552	cpsf4	98	50.345	FBgn0015621	Clp	98	50.345	Drosophila_melanogaster
ENSEBUG00000012552	cpsf4	68	81.818	ENSETEG00000002608	CPSF4	61	81.818	Echinops_telfairi
ENSEBUG00000012552	cpsf4	98	70.161	ENSEASG00005002487	CPSF4	99	71.774	Equus_asinus_asinus
ENSEBUG00000012552	cpsf4	98	65.169	ENSECAG00000007525	CPSF4	99	65.169	Equus_caballus
ENSEBUG00000012552	cpsf4	56	83.582	ENSEEUG00000002158	CPSF4	56	83.582	Erinaceus_europaeus
ENSEBUG00000012552	cpsf4	98	64.103	ENSELUG00000011481	cpsf4	99	64.103	Esox_lucius
ENSEBUG00000012552	cpsf4	98	65.169	ENSFCAG00000015070	CPSF4	99	65.169	Felis_catus
ENSEBUG00000012552	cpsf4	98	72.131	ENSFALG00000013799	CPSF4	99	72.131	Ficedula_albicollis
ENSEBUG00000012552	cpsf4	68	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSEBUG00000012552	cpsf4	88	65.975	ENSFDAG00000014092	CPSF4	99	65.975	Fukomys_damarensis
ENSEBUG00000012552	cpsf4	98	65.779	ENSFHEG00000010880	cpsf4	99	65.779	Fundulus_heteroclitus
ENSEBUG00000012552	cpsf4	98	68.359	ENSGMOG00000002330	cpsf4	99	68.359	Gadus_morhua
ENSEBUG00000012552	cpsf4	98	72.131	ENSGALG00000004714	CPSF4	99	72.131	Gallus_gallus
ENSEBUG00000012552	cpsf4	63	38.043	ENSGALG00000004441	-	92	38.043	Gallus_gallus
ENSEBUG00000012552	cpsf4	98	66.794	ENSGAFG00000010580	cpsf4	99	66.794	Gambusia_affinis
ENSEBUG00000012552	cpsf4	98	68.651	ENSGACG00000007792	cpsf4	99	68.651	Gasterosteus_aculeatus
ENSEBUG00000012552	cpsf4	68	74.545	ENSGAGG00000020579	-	92	74.545	Gopherus_agassizii
ENSEBUG00000012552	cpsf4	98	65.918	ENSGAGG00000021835	CPSF4	99	65.918	Gopherus_agassizii
ENSEBUG00000012552	cpsf4	98	65.169	ENSGGOG00000015131	CPSF4	99	65.169	Gorilla_gorilla
ENSEBUG00000012552	cpsf4	98	64.419	ENSHBUG00000013699	cpsf4	99	64.419	Haplochromis_burtoni
ENSEBUG00000012552	cpsf4	98	63.941	ENSHGLG00000017150	CPSF4	99	65.314	Heterocephalus_glaber_female
ENSEBUG00000012552	cpsf4	98	45.570	ENSHGLG00100017302	-	99	46.414	Heterocephalus_glaber_male
ENSEBUG00000012552	cpsf4	84	62.821	ENSHGLG00100009215	-	99	64.407	Heterocephalus_glaber_male
ENSEBUG00000012552	cpsf4	98	66.920	ENSHCOG00000004397	cpsf4	99	66.920	Hippocampus_comes
ENSEBUG00000012552	cpsf4	98	65.056	ENSIPUG00000017147	cpsf4	99	65.428	Ictalurus_punctatus
ENSEBUG00000012552	cpsf4	98	70.445	ENSSTOG00000001688	CPSF4	99	71.429	Ictidomys_tridecemlineatus
ENSEBUG00000012552	cpsf4	98	65.169	ENSJJAG00000019426	Cpsf4	99	65.169	Jaculus_jaculus
ENSEBUG00000012552	cpsf4	98	64.419	ENSKMAG00000015642	cpsf4	99	64.419	Kryptolebias_marmoratus
ENSEBUG00000012552	cpsf4	98	65.299	ENSLACG00000010938	CPSF4	99	65.299	Latimeria_chalumnae
ENSEBUG00000012552	cpsf4	98	62.295	ENSLACG00000018470	-	99	62.295	Latimeria_chalumnae
ENSEBUG00000012552	cpsf4	98	64.794	ENSLOCG00000004814	cpsf4	99	64.794	Lepisosteus_oculatus
ENSEBUG00000012552	cpsf4	98	65.169	ENSLAFG00000000159	CPSF4	99	65.169	Loxodonta_africana
ENSEBUG00000012552	cpsf4	98	70.711	ENSMFAG00000001462	CPSF4	99	72.821	Macaca_fascicularis
ENSEBUG00000012552	cpsf4	98	65.169	ENSMMUG00000019191	CPSF4	99	65.169	Macaca_mulatta
ENSEBUG00000012552	cpsf4	98	70.711	ENSMNEG00000032306	CPSF4	99	70.711	Macaca_nemestrina
ENSEBUG00000012552	cpsf4	98	70.168	ENSMLEG00000034721	CPSF4	99	70.168	Mandrillus_leucophaeus
ENSEBUG00000012552	cpsf4	98	65.530	ENSMAMG00000006244	cpsf4	99	65.530	Mastacembelus_armatus
ENSEBUG00000012552	cpsf4	98	64.419	ENSMZEG00005007515	cpsf4	99	64.419	Maylandia_zebra
ENSEBUG00000012552	cpsf4	84	72.857	ENSMGAG00000004235	CPSF4	99	72.857	Meleagris_gallopavo
ENSEBUG00000012552	cpsf4	98	65.169	ENSMAUG00000021253	Cpsf4	99	65.169	Mesocricetus_auratus
ENSEBUG00000012552	cpsf4	98	65.169	ENSMICG00000017429	CPSF4	99	65.169	Microcebus_murinus
ENSEBUG00000012552	cpsf4	98	65.169	ENSMOCG00000014901	Cpsf4	99	65.169	Microtus_ochrogaster
ENSEBUG00000012552	cpsf4	98	65.152	ENSMMOG00000001813	cpsf4	95	75.904	Mola_mola
ENSEBUG00000012552	cpsf4	98	65.169	ENSMODG00000001367	CPSF4	99	65.169	Monodelphis_domestica
ENSEBUG00000012552	cpsf4	98	63.910	ENSMALG00000012611	cpsf4	99	63.910	Monopterus_albus
ENSEBUG00000012552	cpsf4	98	70.445	MGP_CAROLIEiJ_G0028012	Cpsf4	99	71.774	Mus_caroli
ENSEBUG00000012552	cpsf4	98	70.445	ENSMUSG00000029625	Cpsf4	99	71.774	Mus_musculus
ENSEBUG00000012552	cpsf4	98	70.445	MGP_PahariEiJ_G0024581	Cpsf4	99	71.774	Mus_pahari
ENSEBUG00000012552	cpsf4	98	70.445	MGP_SPRETEiJ_G0029013	Cpsf4	99	71.774	Mus_spretus
ENSEBUG00000012552	cpsf4	98	65.169	ENSMPUG00000016508	CPSF4	99	65.169	Mustela_putorius_furo
ENSEBUG00000012552	cpsf4	84	71.362	ENSMLUG00000010980	CPSF4	99	72.512	Myotis_lucifugus
ENSEBUG00000012552	cpsf4	98	65.169	ENSNGAG00000001567	Cpsf4	99	65.169	Nannospalax_galili
ENSEBUG00000012552	cpsf4	88	65.690	ENSNBRG00000003943	cpsf4	97	65.690	Neolamprologus_brichardi
ENSEBUG00000012552	cpsf4	98	70.370	ENSNLEG00000011074	CPSF4	99	70.968	Nomascus_leucogenys
ENSEBUG00000012552	cpsf4	98	65.169	ENSMEUG00000006955	CPSF4	99	65.169	Notamacropus_eugenii
ENSEBUG00000012552	cpsf4	98	64.794	ENSOPRG00000013663	CPSF4	99	64.794	Ochotona_princeps
ENSEBUG00000012552	cpsf4	98	59.336	ENSODEG00000018283	-	91	60.905	Octodon_degus
ENSEBUG00000012552	cpsf4	98	55.823	ENSODEG00000009779	-	99	55.823	Octodon_degus
ENSEBUG00000012552	cpsf4	98	65.169	ENSODEG00000011181	-	99	65.169	Octodon_degus
ENSEBUG00000012552	cpsf4	98	64.419	ENSONIG00000008495	cpsf4	99	64.419	Oreochromis_niloticus
ENSEBUG00000012552	cpsf4	95	48.689	ENSOANG00000009568	-	96	48.689	Ornithorhynchus_anatinus
ENSEBUG00000012552	cpsf4	84	65.532	ENSOANG00000007729	CPSF4	99	65.532	Ornithorhynchus_anatinus
ENSEBUG00000012552	cpsf4	98	65.169	ENSOCUG00000002437	CPSF4	70	65.169	Oryctolagus_cuniculus
ENSEBUG00000012552	cpsf4	98	64.259	ENSORLG00000022798	cpsf4	99	64.259	Oryzias_latipes
ENSEBUG00000012552	cpsf4	98	64.259	ENSORLG00020008548	cpsf4	99	64.259	Oryzias_latipes_hni
ENSEBUG00000012552	cpsf4	98	64.639	ENSORLG00015019575	cpsf4	99	64.639	Oryzias_latipes_hsok
ENSEBUG00000012552	cpsf4	98	64.639	ENSOMEG00000005176	cpsf4	99	64.639	Oryzias_melastigma
ENSEBUG00000012552	cpsf4	98	65.169	ENSOGAG00000010884	CPSF4	99	65.169	Otolemur_garnettii
ENSEBUG00000012552	cpsf4	98	57.934	ENSOARG00000018668	CPSF4	99	57.934	Ovis_aries
ENSEBUG00000012552	cpsf4	98	65.169	ENSPPAG00000043355	CPSF4	99	65.169	Pan_paniscus
ENSEBUG00000012552	cpsf4	98	65.169	ENSPPRG00000003134	CPSF4	99	65.169	Panthera_pardus
ENSEBUG00000012552	cpsf4	87	66.667	ENSPTIG00000005604	CPSF4	89	66.667	Panthera_tigris_altaica
ENSEBUG00000012552	cpsf4	98	65.169	ENSPTRG00000019453	CPSF4	99	65.169	Pan_troglodytes
ENSEBUG00000012552	cpsf4	98	70.711	ENSPANG00000023123	CPSF4	99	70.711	Papio_anubis
ENSEBUG00000012552	cpsf4	98	64.338	ENSPKIG00000014278	cpsf4	99	64.338	Paramormyrops_kingsleyae
ENSEBUG00000012552	cpsf4	76	63.830	ENSPSIG00000018198	-	98	63.830	Pelodiscus_sinensis
ENSEBUG00000012552	cpsf4	76	65.728	ENSPSIG00000011229	CPSF4	99	65.728	Pelodiscus_sinensis
ENSEBUG00000012552	cpsf4	98	66.807	ENSPMGG00000017735	cpsf4	99	66.807	Periophthalmus_magnuspinnatus
ENSEBUG00000012552	cpsf4	98	65.169	ENSPEMG00000004508	Cpsf4	99	65.169	Peromyscus_maniculatus_bairdii
ENSEBUG00000012552	cpsf4	98	65.169	ENSPCIG00000024776	CPSF4	99	65.169	Phascolarctos_cinereus
ENSEBUG00000012552	cpsf4	98	66.794	ENSPFOG00000014912	cpsf4	99	66.794	Poecilia_formosa
ENSEBUG00000012552	cpsf4	98	68.443	ENSPLAG00000009599	cpsf4	99	68.443	Poecilia_latipinna
ENSEBUG00000012552	cpsf4	98	66.794	ENSPMEG00000009790	cpsf4	99	66.794	Poecilia_mexicana
ENSEBUG00000012552	cpsf4	98	67.692	ENSPREG00000018166	cpsf4	99	67.692	Poecilia_reticulata
ENSEBUG00000012552	cpsf4	84	65.086	ENSPPYG00000017378	CPSF4	99	65.086	Pongo_abelii
ENSEBUG00000012552	cpsf4	98	64.794	ENSPCAG00000001892	CPSF4	99	64.794	Procavia_capensis
ENSEBUG00000012552	cpsf4	98	65.169	ENSPCOG00000012771	CPSF4	99	65.169	Propithecus_coquereli
ENSEBUG00000012552	cpsf4	98	60.300	ENSPVAG00000007531	CPSF4	99	60.300	Pteropus_vampyrus
ENSEBUG00000012552	cpsf4	98	64.419	ENSPNYG00000018559	cpsf4	99	64.419	Pundamilia_nyererei
ENSEBUG00000012552	cpsf4	98	65.299	ENSPNAG00000003736	cpsf4	99	65.672	Pygocentrus_nattereri
ENSEBUG00000012552	cpsf4	98	70.445	ENSRNOG00000000985	Cpsf4	99	71.429	Rattus_norvegicus
ENSEBUG00000012552	cpsf4	84	65.517	ENSRBIG00000033886	CPSF4	99	65.517	Rhinopithecus_bieti
ENSEBUG00000012552	cpsf4	98	70.370	ENSRROG00000040431	CPSF4	99	70.968	Rhinopithecus_roxellana
ENSEBUG00000012552	cpsf4	98	65.169	ENSSBOG00000020493	CPSF4	99	72.821	Saimiri_boliviensis_boliviensis
ENSEBUG00000012552	cpsf4	98	65.169	ENSSHAG00000011533	CPSF4	99	65.169	Sarcophilus_harrisii
ENSEBUG00000012552	cpsf4	98	63.869	ENSSFOG00015007883	cpsf4	99	63.869	Scleropages_formosus
ENSEBUG00000012552	cpsf4	98	69.421	ENSSMAG00000006374	cpsf4	99	69.421	Scophthalmus_maximus
ENSEBUG00000012552	cpsf4	98	65.530	ENSSDUG00000018887	cpsf4	99	65.530	Seriola_dumerili
ENSEBUG00000012552	cpsf4	98	65.530	ENSSLDG00000019078	cpsf4	99	65.530	Seriola_lalandi_dorsalis
ENSEBUG00000012552	cpsf4	84	65.517	ENSSARG00000012416	CPSF4	99	65.517	Sorex_araneus
ENSEBUG00000012552	cpsf4	98	65.918	ENSSPUG00000003549	CPSF4	99	65.918	Sphenodon_punctatus
ENSEBUG00000012552	cpsf4	96	62.553	ENSSPUG00000014803	-	98	62.553	Sphenodon_punctatus
ENSEBUG00000012552	cpsf4	98	71.667	ENSSPAG00000006174	cpsf4	99	71.667	Stegastes_partitus
ENSEBUG00000012552	cpsf4	98	70.161	ENSSSCG00000026896	CPSF4	99	71.774	Sus_scrofa
ENSEBUG00000012552	cpsf4	98	71.545	ENSTGUG00000007552	CPSF4	99	71.545	Taeniopygia_guttata
ENSEBUG00000012552	cpsf4	98	67.681	ENSTRUG00000024220	cpsf4	99	67.681	Takifugu_rubripes
ENSEBUG00000012552	cpsf4	98	67.050	ENSTNIG00000006265	cpsf4	99	66.920	Tetraodon_nigroviridis
ENSEBUG00000012552	cpsf4	84	59.244	ENSTBEG00000011406	CPSF4	99	61.207	Tupaia_belangeri
ENSEBUG00000012552	cpsf4	73	81.921	ENSTTRG00000003007	CPSF4	67	81.111	Tursiops_truncatus
ENSEBUG00000012552	cpsf4	92	69.828	ENSUAMG00000008051	CPSF4	87	70.870	Ursus_americanus
ENSEBUG00000012552	cpsf4	98	70.445	ENSUMAG00000009474	CPSF4	99	71.429	Ursus_maritimus
ENSEBUG00000012552	cpsf4	98	71.193	ENSVVUG00000008824	CPSF4	99	70.902	Vulpes_vulpes
ENSEBUG00000012552	cpsf4	98	62.094	ENSXETG00000009892	cpsf4	99	62.816	Xenopus_tropicalis
ENSEBUG00000012552	cpsf4	98	59.926	ENSXETG00000004641	cpsf4l	99	59.926	Xenopus_tropicalis
ENSEBUG00000012552	cpsf4	98	66.794	ENSXCOG00000016040	cpsf4	99	66.794	Xiphophorus_couchianus
ENSEBUG00000012552	cpsf4	98	66.794	ENSXMAG00000024670	cpsf4	99	66.794	Xiphophorus_maculatus