EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000012728 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 147640 bases
Position: chrFYBX02009701.1:141526-289165
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000020575	KH_1	PF00013.29	1.2e-07	1	1
ENSEBUP00000020547	KH_1	PF00013.29	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000021123	-	2645	-	ENSEBUP00000020547	743 (aa)	-	-
ENSEBUT00000021151	-	2537	-	ENSEBUP00000020575	707 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000012728's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000012728's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000012728	sf1	61	55.699	ENSATEG00000001894	sf1	86	48.649	Anabas_testudineus
ENSEBUG00000012728	sf1	53	61.654	ENSANAG00000026664	-	91	61.614	Aotus_nancymaae
ENSEBUG00000012728	sf1	61	57.792	ENSACLG00000007633	sf1	100	48.202	Astatotilapia_calliptera
ENSEBUG00000012728	sf1	62	57.204	ENSAMXG00000003630	sf1	89	47.537	Astyanax_mexicanus
ENSEBUG00000012728	sf1	54	55.443	ENSCCAG00000023781	-	82	56.010	Cebus_capucinus
ENSEBUG00000012728	sf1	57	52.414	ENSCING00000005564	-	94	49.203	Ciona_intestinalis
ENSEBUG00000012728	sf1	51	55.615	ENSCSAVG00000009055	-	62	58.845	Ciona_savignyi
ENSEBUG00000012728	sf1	58	59.302	ENSCSEG00000014375	sf1	83	48.718	Cynoglossus_semilaevis
ENSEBUG00000012728	sf1	51	63.032	ENSCVAG00000001670	sf1	99	49.112	Cyprinodon_variegatus
ENSEBUG00000012728	sf1	59	58.161	ENSDARG00000008188	sf1	87	49.011	Danio_rerio
ENSEBUG00000012728	sf1	56	52.488	FBgn0025571	SF1	64	44.872	Drosophila_melanogaster
ENSEBUG00000012728	sf1	58	59.251	ENSELUG00000013225	sf1	62	54.491	Esox_lucius
ENSEBUG00000012728	sf1	63	55.992	ENSGAFG00000019284	sf1	95	47.246	Gambusia_affinis
ENSEBUG00000012728	sf1	53	61.757	ENSGACG00000000826	sf1	91	52.007	Gasterosteus_aculeatus
ENSEBUG00000012728	sf1	61	56.522	ENSHCOG00000011388	sf1	86	47.904	Hippocampus_comes
ENSEBUG00000012728	sf1	61	55.556	ENSKMAG00000005854	sf1	90	47.153	Kryptolebias_marmoratus
ENSEBUG00000012728	sf1	58	60.233	ENSLBEG00000019836	sf1	93	51.040	Labrus_bergylta
ENSEBUG00000012728	sf1	54	56.965	ENSLACG00000018493	SF1	96	44.992	Latimeria_chalumnae
ENSEBUG00000012728	sf1	61	54.737	ENSLOCG00000002130	sf1	93	45.042	Lepisosteus_oculatus
ENSEBUG00000012728	sf1	61	55.824	ENSMMOG00000020474	sf1	86	47.727	Mola_mola
ENSEBUG00000012728	sf1	61	55.702	ENSMALG00000020521	sf1	89	50.086	Monopterus_albus
ENSEBUG00000012728	sf1	61	57.576	ENSNBRG00000017606	sf1	100	48.331	Neolamprologus_brichardi
ENSEBUG00000012728	sf1	59	68.224	ENSPMAG00000008272	sf1	86	55.605	Petromyzon_marinus
ENSEBUG00000012728	sf1	51	62.766	ENSPFOG00000013683	sf1	100	47.082	Poecilia_formosa
ENSEBUG00000012728	sf1	61	56.962	ENSPNYG00000004673	sf1	100	47.442	Pundamilia_nyererei
ENSEBUG00000012728	sf1	62	57.082	ENSPNAG00000013072	sf1	100	46.983	Pygocentrus_nattereri
ENSEBUG00000012728	sf1	53	51.880	ENSSBOG00000022267	-	89	52.525	Saimiri_boliviensis_boliviensis
ENSEBUG00000012728	sf1	60	57.753	ENSSFOG00015021978	sf1	100	47.754	Scleropages_formosus
ENSEBUG00000012728	sf1	59	57.336	ENSSMAG00000007549	sf1	86	49.918	Scophthalmus_maximus
ENSEBUG00000012728	sf1	51	63.061	ENSXCOG00000003704	sf1	90	53.861	Xiphophorus_couchianus