EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000012753 (Gene tree)
Gene ID: -
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin 1a
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 46392 bases
Position: chrFYBX02010376.1:899507-945898
Accession: ZDB-GENE-021028-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000020641	Nucleoplasmin	PF03066.15	1.5e-34	1	1
ENSEBUP00000020613	Nucleoplasmin	PF03066.15	3.9e-33	1	1
ENSEBUP00000020602	Nucleoplasmin	PF03066.15	5.3e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000021217	-	4263	-	ENSEBUP00000020641	347 (aa)	-	-
ENSEBUT00000021178	-	3602	-	ENSEBUP00000020602	387 (aa)	-	-
ENSEBUT00000021189	-	3443	-	ENSEBUP00000020613	334 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000012753's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000012753's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000012753	npm1a	93	36.615	ENSAPOG00000002813	npm1a	96	36.562	Acanthochromis_polyacanthus
ENSEBUG00000012753	npm1a	74	35.206	ENSACIG00000014201	npm1a	98	37.079	Amphilophus_citrinellus
ENSEBUG00000012753	npm1a	69	33.735	ENSAOCG00000004978	npm1a	97	35.021	Amphiprion_ocellaris
ENSEBUG00000012753	npm1a	93	35.780	ENSAPEG00000008594	npm1a	96	37.805	Amphiprion_percula
ENSEBUG00000012753	npm1a	91	38.199	ENSATEG00000008885	npm1a	95	38.820	Anabas_testudineus
ENSEBUG00000012753	npm1a	93	33.537	ENSACLG00000008376	npm1a	99	34.451	Astatotilapia_calliptera
ENSEBUG00000012753	npm1a	76	33.992	ENSCSEG00000011165	npm1a	80	48.485	Cynoglossus_semilaevis
ENSEBUG00000012753	npm1a	90	36.646	ENSCVAG00000008960	npm1a	94	36.646	Cyprinodon_variegatus
ENSEBUG00000012753	npm1a	86	41.196	ENSDARG00000014329	npm1a	96	37.975	Danio_rerio
ENSEBUG00000012753	npm1a	90	37.931	ENSELUG00000013705	npm1a	94	36.250	Esox_lucius
ENSEBUG00000012753	npm1a	91	34.985	ENSFHEG00000012496	npm1a	95	34.365	Fundulus_heteroclitus
ENSEBUG00000012753	npm1a	93	34.356	ENSGAFG00000013059	npm1a	95	34.462	Gambusia_affinis
ENSEBUG00000012753	npm1a	74	34.701	ENSGACG00000020319	npm1a	95	33.438	Gasterosteus_aculeatus
ENSEBUG00000012753	npm1a	93	34.862	ENSHBUG00000000776	npm1a	98	35.241	Haplochromis_burtoni
ENSEBUG00000012753	npm1a	77	41.485	ENSHCOG00000001059	npm1a	90	40.310	Hippocampus_comes
ENSEBUG00000012753	npm1a	77	36.688	ENSKMAG00000010709	npm1a	95	32.923	Kryptolebias_marmoratus
ENSEBUG00000012753	npm1a	87	34.628	ENSLBEG00000008793	npm1a	92	37.410	Labrus_bergylta
ENSEBUG00000012753	npm1a	91	36.223	ENSMAMG00000009344	npm1a	79	36.335	Mastacembelus_armatus
ENSEBUG00000012753	npm1a	93	36.280	ENSMZEG00005013717	npm1a	98	36.667	Maylandia_zebra
ENSEBUG00000012753	npm1a	88	37.224	ENSMMOG00000007980	npm1a	99	35.766	Mola_mola
ENSEBUG00000012753	npm1a	77	33.981	ENSMALG00000001146	npm1a	94	34.985	Monopterus_albus
ENSEBUG00000012753	npm1a	91	33.537	ENSONIG00000001860	npm1a	97	36.778	Oreochromis_niloticus
ENSEBUG00000012753	npm1a	91	33.856	ENSORLG00000010179	npm1a	95	33.856	Oryzias_latipes
ENSEBUG00000012753	npm1a	91	34.062	ENSORLG00020020817	npm1a	95	33.125	Oryzias_latipes_hni
ENSEBUG00000012753	npm1a	91	33.856	ENSORLG00015003439	npm1a	95	34.062	Oryzias_latipes_hsok
ENSEBUG00000012753	npm1a	93	33.538	ENSOMEG00000007083	npm1a	97	33.846	Oryzias_melastigma
ENSEBUG00000012753	npm1a	86	36.184	ENSPKIG00000023943	npm1a	92	35.294	Paramormyrops_kingsleyae
ENSEBUG00000012753	npm1a	87	34.323	ENSPMGG00000011716	npm1a	93	33.882	Periophthalmus_magnuspinnatus
ENSEBUG00000012753	npm1a	86	36.601	ENSPFOG00000019173	npm1a	93	36.000	Poecilia_formosa
ENSEBUG00000012753	npm1a	78	34.983	ENSPLAG00000001093	npm1a	93	35.252	Poecilia_latipinna
ENSEBUG00000012753	npm1a	86	36.601	ENSPMEG00000012523	npm1a	93	34.767	Poecilia_mexicana
ENSEBUG00000012753	npm1a	87	36.393	ENSPREG00000001647	npm1a	95	35.913	Poecilia_reticulata
ENSEBUG00000012753	npm1a	93	34.862	ENSPNYG00000019321	npm1a	98	37.082	Pundamilia_nyererei
ENSEBUG00000012753	npm1a	86	39.597	ENSPNAG00000026891	npm1a	95	38.978	Pygocentrus_nattereri
ENSEBUG00000012753	npm1a	87	36.156	ENSSMAG00000019090	npm1a	95	37.267	Scophthalmus_maximus
ENSEBUG00000012753	npm1a	91	35.385	ENSSDUG00000015609	npm1a	95	34.969	Seriola_dumerili
ENSEBUG00000012753	npm1a	91	36.420	ENSSLDG00000017849	npm1a	95	36.420	Seriola_lalandi_dorsalis
ENSEBUG00000012753	npm1a	79	33.696	ENSSPAG00000021660	npm1a	94	33.700	Stegastes_partitus
ENSEBUG00000012753	npm1a	91	37.690	ENSTRUG00000024003	npm1a	95	38.298	Takifugu_rubripes
ENSEBUG00000012753	npm1a	91	34.675	ENSTNIG00000010773	npm1a	95	33.437	Tetraodon_nigroviridis
ENSEBUG00000012753	npm1a	63	45.614	ENSXCOG00000005958	npm1a	97	34.432	Xiphophorus_couchianus
ENSEBUG00000012753	npm1a	91	36.000	ENSXMAG00000000396	npm1a	94	34.985	Xiphophorus_maculatus