EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000012794 (Gene tree)
Gene ID: -
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor%2C mitochondrial 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 189262 bases
Position: chrFYBX02009516.1:1819344-2008605
Accession: ZDB-GENE-061013-79
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000020694	GTP_EFTU	PF00009.27	1.1e-44	1	1
ENSEBUP00000020720	GTP_EFTU	PF00009.27	1.1e-44	1	1
ENSEBUP00000020694	GTP_EFTU_D2	PF03144.25	3.7e-15	1	1
ENSEBUP00000020720	GTP_EFTU_D2	PF03144.25	3.7e-15	1	1
ENSEBUP00000020694	EFG_IV	PF03764.18	2.1e-30	1	1
ENSEBUP00000020720	EFG_IV	PF03764.18	2.1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000021270	-	2996	-	ENSEBUP00000020694	673 (aa)	-	-
ENSEBUT00000021296	-	3675	-	ENSEBUP00000020720	673 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000012794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000012794's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000012794	gfm1	70	32.948	ENSEBUG00000009369	-	63	32.948
ENSEBUG00000012794	gfm1	87	56.250	ENSEBUG00000012181	gfm2	87	56.034

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000012794	gfm1	99	66.222	ENSG00000168827	GFM1	100	83.333	Homo_sapiens
ENSEBUG00000012794	gfm1	94	63.608	ENSAPOG00000016489	gfm1	91	63.608	Acanthochromis_polyacanthus
ENSEBUG00000012794	gfm1	99	65.481	ENSAMEG00000013542	GFM1	90	65.481	Ailuropoda_melanoleuca
ENSEBUG00000012794	gfm1	92	61.798	ENSACIG00000014465	gfm1	83	61.798	Amphilophus_citrinellus
ENSEBUG00000012794	gfm1	100	63.353	ENSAOCG00000006023	gfm1	90	63.353	Amphiprion_ocellaris
ENSEBUG00000012794	gfm1	100	63.259	ENSAPEG00000024499	gfm1	93	63.150	Amphiprion_percula
ENSEBUG00000012794	gfm1	99	62.611	ENSATEG00000013789	gfm1	90	62.611	Anabas_testudineus
ENSEBUG00000012794	gfm1	100	64.793	ENSAPLG00000005022	GFM1	93	64.793	Anas_platyrhynchos
ENSEBUG00000012794	gfm1	100	64.444	ENSACAG00000006829	GFM1	91	64.444	Anolis_carolinensis
ENSEBUG00000012794	gfm1	99	66.963	ENSANAG00000035983	GFM1	90	66.963	Aotus_nancymaae
ENSEBUG00000012794	gfm1	100	63.259	ENSACLG00000016586	gfm1	93	62.777	Astatotilapia_calliptera
ENSEBUG00000012794	gfm1	99	63.299	ENSAMXG00000013435	gfm1	90	63.299	Astyanax_mexicanus
ENSEBUG00000012794	gfm1	99	66.914	ENSBTAG00000027795	GFM1	90	66.914	Bos_taurus
ENSEBUG00000012794	gfm1	98	53.414	WBGene00009246	gfm-1	88	53.414	Caenorhabditis_elegans
ENSEBUG00000012794	gfm1	99	67.111	ENSCJAG00000000363	GFM1	90	67.111	Callithrix_jacchus
ENSEBUG00000012794	gfm1	99	66.074	ENSCAFG00000009006	GFM1	99	66.074	Canis_familiaris
ENSEBUG00000012794	gfm1	99	66.074	ENSCAFG00020005878	GFM1	92	66.074	Canis_lupus_dingo
ENSEBUG00000012794	gfm1	99	66.914	ENSCHIG00000015220	GFM1	90	66.914	Capra_hircus
ENSEBUG00000012794	gfm1	99	66.815	ENSTSYG00000002013	GFM1	90	66.815	Carlito_syrichta
ENSEBUG00000012794	gfm1	93	58.917	ENSCAPG00000005699	GFM1	87	58.917	Cavia_aperea
ENSEBUG00000012794	gfm1	99	66.074	ENSCPOG00000001194	GFM1	90	66.074	Cavia_porcellus
ENSEBUG00000012794	gfm1	99	66.963	ENSCCAG00000025561	GFM1	90	66.963	Cebus_capucinus
ENSEBUG00000012794	gfm1	99	66.222	ENSCATG00000037622	GFM1	90	66.222	Cercocebus_atys
ENSEBUG00000012794	gfm1	99	66.074	ENSCLAG00000002503	GFM1	89	66.074	Chinchilla_lanigera
ENSEBUG00000012794	gfm1	99	66.074	ENSCSAG00000012162	GFM1	90	66.074	Chlorocebus_sabaeus
ENSEBUG00000012794	gfm1	99	58.222	ENSCHOG00000004867	GFM1	89	58.222	Choloepus_hoffmanni
ENSEBUG00000012794	gfm1	100	64.000	ENSCPBG00000018367	GFM1	90	64.000	Chrysemys_picta_bellii
ENSEBUG00000012794	gfm1	99	54.386	ENSCING00000011960	-	89	54.386	Ciona_intestinalis
ENSEBUG00000012794	gfm1	99	54.911	ENSCSAVG00000008514	-	96	52.984	Ciona_savignyi
ENSEBUG00000012794	gfm1	99	66.074	ENSCANG00000031714	GFM1	90	66.074	Colobus_angolensis_palliatus
ENSEBUG00000012794	gfm1	99	66.469	ENSCGRG00001022095	GFM1	90	66.469	Cricetulus_griseus_chok1gshd
ENSEBUG00000012794	gfm1	99	66.469	ENSCGRG00000012043	GFM1	90	66.469	Cricetulus_griseus_crigri
ENSEBUG00000012794	gfm1	99	60.602	ENSCSEG00000017088	gfm1	91	60.602	Cynoglossus_semilaevis
ENSEBUG00000012794	gfm1	100	64.095	ENSCVAG00000004126	gfm1	94	62.315	Cyprinodon_variegatus
ENSEBUG00000012794	gfm1	99	63.056	ENSDARG00000063624	gfm1	90	63.056	Danio_rerio
ENSEBUG00000012794	gfm1	59	67.168	ENSDNOG00000016385	-	98	67.168	Dasypus_novemcinctus
ENSEBUG00000012794	gfm1	99	66.815	ENSDORG00000014165	Gfm1	90	66.815	Dipodomys_ordii
ENSEBUG00000012794	gfm1	98	59.909	FBgn0263133	mEFG1	89	59.909	Drosophila_melanogaster
ENSEBUG00000012794	gfm1	99	61.448	ENSETEG00000019197	GFM1	90	61.448	Echinops_telfairi
ENSEBUG00000012794	gfm1	93	50.715	ENSEEUG00000000429	GFM1	87	50.715	Erinaceus_europaeus
ENSEBUG00000012794	gfm1	99	63.609	ENSELUG00000014728	gfm1	89	63.609	Esox_lucius
ENSEBUG00000012794	gfm1	99	65.926	ENSFCAG00000013291	GFM1	90	65.926	Felis_catus
ENSEBUG00000012794	gfm1	99	65.134	ENSFALG00000007619	GFM1	99	65.134	Ficedula_albicollis
ENSEBUG00000012794	gfm1	99	67.111	ENSFDAG00000016559	GFM1	90	67.111	Fukomys_damarensis
ENSEBUG00000012794	gfm1	100	63.166	ENSFHEG00000006091	gfm1	90	63.166	Fundulus_heteroclitus
ENSEBUG00000012794	gfm1	99	63.018	ENSGMOG00000010161	gfm1	93	63.018	Gadus_morhua
ENSEBUG00000012794	gfm1	100	65.333	ENSGALG00000009634	GFM1	91	65.333	Gallus_gallus
ENSEBUG00000012794	gfm1	99	62.519	ENSGAFG00000012527	gfm1	90	62.519	Gambusia_affinis
ENSEBUG00000012794	gfm1	100	63.166	ENSGACG00000009864	gfm1	90	63.166	Gasterosteus_aculeatus
ENSEBUG00000012794	gfm1	99	66.074	ENSGGOG00000003085	GFM1	90	66.074	Gorilla_gorilla
ENSEBUG00000012794	gfm1	100	63.259	ENSHBUG00000002120	gfm1	90	63.259	Haplochromis_burtoni
ENSEBUG00000012794	gfm1	99	66.370	ENSHGLG00000016855	GFM1	90	66.370	Heterocephalus_glaber_female
ENSEBUG00000012794	gfm1	99	66.370	ENSHGLG00100013049	GFM1	90	66.370	Heterocephalus_glaber_male
ENSEBUG00000012794	gfm1	100	62.760	ENSHCOG00000007638	gfm1	89	64.103	Hippocampus_comes
ENSEBUG00000012794	gfm1	99	63.759	ENSIPUG00000005873	gfm1	89	63.759	Ictalurus_punctatus
ENSEBUG00000012794	gfm1	99	66.370	ENSSTOG00000010150	GFM1	91	66.370	Ictidomys_tridecemlineatus
ENSEBUG00000012794	gfm1	99	65.875	ENSJJAG00000016447	Gfm1	90	65.875	Jaculus_jaculus
ENSEBUG00000012794	gfm1	99	63.056	ENSKMAG00000020768	gfm1	90	63.056	Kryptolebias_marmoratus
ENSEBUG00000012794	gfm1	99	62.707	ENSLBEG00000021315	gfm1	95	62.707	Labrus_bergylta
ENSEBUG00000012794	gfm1	99	63.947	ENSLACG00000012295	GFM1	91	63.947	Latimeria_chalumnae
ENSEBUG00000012794	gfm1	94	63.208	ENSLOCG00000003778	gfm1	88	63.208	Lepisosteus_oculatus
ENSEBUG00000012794	gfm1	99	64.889	ENSLAFG00000010945	GFM1	93	63.556	Loxodonta_africana
ENSEBUG00000012794	gfm1	99	66.370	ENSMFAG00000035731	GFM1	90	66.370	Macaca_fascicularis
ENSEBUG00000012794	gfm1	99	66.370	ENSMMUG00000004961	GFM1	90	66.370	Macaca_mulatta
ENSEBUG00000012794	gfm1	99	66.517	ENSMNEG00000033245	GFM1	89	66.517	Macaca_nemestrina
ENSEBUG00000012794	gfm1	99	65.037	ENSMLEG00000030908	GFM1	93	64.409	Mandrillus_leucophaeus
ENSEBUG00000012794	gfm1	99	63.650	ENSMAMG00000011760	gfm1	90	63.650	Mastacembelus_armatus
ENSEBUG00000012794	gfm1	100	63.111	ENSMZEG00005016639	gfm1	90	63.111	Maylandia_zebra
ENSEBUG00000012794	gfm1	100	65.037	ENSMGAG00000010641	GFM1	91	65.037	Meleagris_gallopavo
ENSEBUG00000012794	gfm1	99	66.469	ENSMAUG00000000611	Gfm1	90	66.469	Mesocricetus_auratus
ENSEBUG00000012794	gfm1	99	65.778	ENSMICG00000049086	GFM1	90	65.778	Microcebus_murinus
ENSEBUG00000012794	gfm1	99	66.172	ENSMOCG00000000465	Gfm1	90	66.172	Microtus_ochrogaster
ENSEBUG00000012794	gfm1	100	62.315	ENSMMOG00000012538	gfm1	91	62.315	Mola_mola
ENSEBUG00000012794	gfm1	100	65.481	ENSMODG00000015673	GFM1	91	65.481	Monodelphis_domestica
ENSEBUG00000012794	gfm1	99	63.393	ENSMALG00000012508	gfm1	90	63.393	Monopterus_albus
ENSEBUG00000012794	gfm1	99	67.259	MGP_CAROLIEiJ_G0025052	Gfm1	90	67.259	Mus_caroli
ENSEBUG00000012794	gfm1	99	67.259	ENSMUSG00000027774	Gfm1	90	67.259	Mus_musculus
ENSEBUG00000012794	gfm1	100	67.160	MGP_PahariEiJ_G0026495	Gfm1	90	67.160	Mus_pahari
ENSEBUG00000012794	gfm1	99	67.259	MGP_SPRETEiJ_G0025994	Gfm1	90	67.259	Mus_spretus
ENSEBUG00000012794	gfm1	99	65.630	ENSMPUG00000002859	GFM1	90	65.630	Mustela_putorius_furo
ENSEBUG00000012794	gfm1	99	65.926	ENSMLUG00000000452	GFM1	90	65.926	Myotis_lucifugus
ENSEBUG00000012794	gfm1	99	66.172	ENSNGAG00000012375	Gfm1	90	66.172	Nannospalax_galili
ENSEBUG00000012794	gfm1	100	63.111	ENSNBRG00000004631	gfm1	93	63.111	Neolamprologus_brichardi
ENSEBUG00000012794	gfm1	99	65.926	ENSNLEG00000004176	GFM1	90	65.926	Nomascus_leucogenys
ENSEBUG00000012794	gfm1	94	57.547	ENSMEUG00000007784	GFM1	93	57.547	Notamacropus_eugenii
ENSEBUG00000012794	gfm1	99	66.815	ENSOPRG00000009860	GFM1	91	66.815	Ochotona_princeps
ENSEBUG00000012794	gfm1	99	66.222	ENSODEG00000004316	GFM1	90	66.222	Octodon_degus
ENSEBUG00000012794	gfm1	100	62.963	ENSONIG00000003772	gfm1	90	62.963	Oreochromis_niloticus
ENSEBUG00000012794	gfm1	99	67.111	ENSOCUG00000013561	GFM1	90	67.111	Oryctolagus_cuniculus
ENSEBUG00000012794	gfm1	99	63.459	ENSORLG00000006487	gfm1	94	63.459	Oryzias_latipes
ENSEBUG00000012794	gfm1	99	63.609	ENSORLG00020003362	gfm1	89	63.609	Oryzias_latipes_hni
ENSEBUG00000012794	gfm1	99	63.609	ENSORLG00015005829	gfm1	89	63.609	Oryzias_latipes_hsok
ENSEBUG00000012794	gfm1	100	63.259	ENSOMEG00000012894	gfm1	90	63.259	Oryzias_melastigma
ENSEBUG00000012794	gfm1	99	66.074	ENSOGAG00000008298	GFM1	90	66.074	Otolemur_garnettii
ENSEBUG00000012794	gfm1	99	66.322	ENSOARG00000002409	GFM1	93	66.322	Ovis_aries
ENSEBUG00000012794	gfm1	99	66.074	ENSPPAG00000033881	GFM1	90	66.074	Pan_paniscus
ENSEBUG00000012794	gfm1	99	65.926	ENSPPRG00000009281	GFM1	90	65.926	Panthera_pardus
ENSEBUG00000012794	gfm1	99	65.926	ENSPTIG00000012416	GFM1	90	65.926	Panthera_tigris_altaica
ENSEBUG00000012794	gfm1	99	66.074	ENSPTRG00000015570	GFM1	90	66.074	Pan_troglodytes
ENSEBUG00000012794	gfm1	99	66.370	ENSPANG00000016512	GFM1	90	66.370	Papio_anubis
ENSEBUG00000012794	gfm1	99	64.243	ENSPKIG00000004876	gfm1	90	64.243	Paramormyrops_kingsleyae
ENSEBUG00000012794	gfm1	100	65.185	ENSPSIG00000012567	GFM1	90	65.185	Pelodiscus_sinensis
ENSEBUG00000012794	gfm1	99	62.913	ENSPMGG00000014068	gfm1	92	62.913	Periophthalmus_magnuspinnatus
ENSEBUG00000012794	gfm1	99	66.766	ENSPEMG00000008942	Gfm1	90	66.766	Peromyscus_maniculatus_bairdii
ENSEBUG00000012794	gfm1	84	64.121	ENSPCIG00000020195	GFM1	88	64.171	Phascolarctos_cinereus
ENSEBUG00000012794	gfm1	99	63.205	ENSPFOG00000011022	gfm1	90	63.205	Poecilia_formosa
ENSEBUG00000012794	gfm1	99	63.205	ENSPLAG00000019585	gfm1	90	63.693	Poecilia_latipinna
ENSEBUG00000012794	gfm1	99	63.056	ENSPMEG00000012376	gfm1	90	63.056	Poecilia_mexicana
ENSEBUG00000012794	gfm1	99	62.908	ENSPREG00000001332	gfm1	86	62.908	Poecilia_reticulata
ENSEBUG00000012794	gfm1	99	66.074	ENSPPYG00000014244	GFM1	90	66.074	Pongo_abelii
ENSEBUG00000012794	gfm1	100	65.976	ENSPCAG00000008934	GFM1	96	65.976	Procavia_capensis
ENSEBUG00000012794	gfm1	99	65.926	ENSPCOG00000022259	GFM1	90	65.926	Propithecus_coquereli
ENSEBUG00000012794	gfm1	99	66.370	ENSPVAG00000013605	GFM1	90	66.370	Pteropus_vampyrus
ENSEBUG00000012794	gfm1	100	63.111	ENSPNYG00000006037	gfm1	91	63.111	Pundamilia_nyererei
ENSEBUG00000012794	gfm1	99	63.650	ENSPNAG00000001237	gfm1	91	63.650	Pygocentrus_nattereri
ENSEBUG00000012794	gfm1	99	67.111	ENSRNOG00000012873	Gfm1	90	67.111	Rattus_norvegicus
ENSEBUG00000012794	gfm1	99	66.222	ENSRBIG00000031363	GFM1	90	66.222	Rhinopithecus_bieti
ENSEBUG00000012794	gfm1	99	66.074	ENSRROG00000031081	GFM1	90	66.074	Rhinopithecus_roxellana
ENSEBUG00000012794	gfm1	98	53.846	YLR069C	-	86	53.846	Saccharomyces_cerevisiae
ENSEBUG00000012794	gfm1	99	67.111	ENSSBOG00000023252	GFM1	90	67.111	Saimiri_boliviensis_boliviensis
ENSEBUG00000012794	gfm1	100	65.185	ENSSHAG00000017772	GFM1	90	65.185	Sarcophilus_harrisii
ENSEBUG00000012794	gfm1	99	65.727	ENSSFOG00015003117	gfm1	93	65.436	Scleropages_formosus
ENSEBUG00000012794	gfm1	100	62.463	ENSSMAG00000013221	gfm1	90	62.463	Scophthalmus_maximus
ENSEBUG00000012794	gfm1	100	63.111	ENSSDUG00000018665	gfm1	90	63.111	Seriola_dumerili
ENSEBUG00000012794	gfm1	100	63.111	ENSSLDG00000020606	gfm1	90	63.111	Seriola_lalandi_dorsalis
ENSEBUG00000012794	gfm1	100	62.963	ENSSPUG00000018686	GFM1	91	62.963	Sphenodon_punctatus
ENSEBUG00000012794	gfm1	100	63.259	ENSSPAG00000008800	gfm1	90	63.259	Stegastes_partitus
ENSEBUG00000012794	gfm1	99	67.062	ENSSSCG00000025651	GFM1	89	67.062	Sus_scrofa
ENSEBUG00000012794	gfm1	100	63.259	ENSTRUG00000009244	gfm1	90	63.259	Takifugu_rubripes
ENSEBUG00000012794	gfm1	100	61.778	ENSTNIG00000007729	gfm1	90	61.778	Tetraodon_nigroviridis
ENSEBUG00000012794	gfm1	99	60.534	ENSTBEG00000017404	GFM1	89	60.534	Tupaia_belangeri
ENSEBUG00000012794	gfm1	99	66.767	ENSTTRG00000001735	GFM1	88	66.767	Tursiops_truncatus
ENSEBUG00000012794	gfm1	99	66.222	ENSUAMG00000026381	GFM1	90	66.222	Ursus_americanus
ENSEBUG00000012794	gfm1	99	66.222	ENSUMAG00000011268	GFM1	90	66.222	Ursus_maritimus
ENSEBUG00000012794	gfm1	99	63.205	ENSVPAG00000009444	GFM1	90	63.205	Vicugna_pacos
ENSEBUG00000012794	gfm1	99	65.778	ENSVVUG00000020091	GFM1	99	65.778	Vulpes_vulpes
ENSEBUG00000012794	gfm1	100	63.259	ENSXETG00000032551	GFM1	90	63.259	Xenopus_tropicalis
ENSEBUG00000012794	gfm1	99	62.760	ENSXMAG00000000261	gfm1	90	62.760	Xiphophorus_maculatus