EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000013583 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 56908 bases
Position: chrFYBX02009516.1:2008952-2065859
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000022012	Smg4_UPF3	PF03467.15	1.3e-46	1	1
ENSEBUP00000022028	Smg4_UPF3	PF03467.15	1.4e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000022604	-	2250	-	ENSEBUP00000022028	485 (aa)	-	-
ENSEBUT00000022588	-	2378	-	ENSEBUP00000022012	466 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000013583's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000013583's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000013583	upf3a	51	47.737	ENSCSEG00000002046	upf3b	87	35.881	Cynoglossus_semilaevis
ENSEBUG00000013583	upf3a	55	46.494	ENSLOCG00000015238	upf3b	53	49.388	Lepisosteus_oculatus
ENSEBUG00000013583	upf3a	64	43.791	ENSPKIG00000019226	upf3b	72	56.250	Paramormyrops_kingsleyae
ENSEBUG00000013583	upf3a	55	47.451	ENSSMAG00000012913	upf3b	64	52.736	Scophthalmus_maximus
ENSEBUG00000013583	upf3a	55	48.627	ENSSPAG00000009989	upf3b	89	37.124	Stegastes_partitus
ENSEBUG00000013583	upf3a	91	33.696	ENSXETG00000007440	upf3b	87	52.451	Xenopus_tropicalis