EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000013967 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 31823 bases
Position: chrFYBX02009727.1:1837032-1868854
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000022673	RNA_pol_Rpb1_5	PF04998.17	3.1e-101	1	1
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	1	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	2	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	3	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	4	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	5	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	6	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	7	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	8	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	9	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	10	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	11	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	12	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	13	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	14	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	15	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	16	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	17	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	18	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	19	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	20	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	21	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	22	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	23	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	24	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	25	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	26	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	27	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	28	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	29	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	30	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	31	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	32	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	33	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	34	35
ENSEBUP00000022673	RNA_pol_Rpb1_R	PF05001.13	1.8e-17	35	35
ENSEBUP00000022673	RNA_pol_Rpb1_4	PF05000.17	5.3e-38	1	1
ENSEBUP00000022673	RNA_pol_Rpb1_2	PF00623.20	1.2e-74	1	1
ENSEBUP00000022673	RNA_pol_Rpb1_3	PF04983.18	8.4e-48	1	1
ENSEBUP00000022673	RNA_pol_Rpb1_1	PF04997.12	6.6e-110	1	1
ENSEBUP00000022673	RNA_pol_Rpb1_7	PF04990.12	4.2e-54	1	1
ENSEBUP00000022673	RNA_pol_Rpb1_6	PF04992.14	1.8e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000023249	-	7211	-	ENSEBUP00000022673	1968 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000013967's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000013967's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000013967	polr2a	86	87.383	ENSAPOG00000006552	polr2a	91	87.399	Acanthochromis_polyacanthus
ENSEBUG00000013967	polr2a	82	87.205	ENSAMEG00000016265	-	81	87.796	Ailuropoda_melanoleuca
ENSEBUG00000013967	polr2a	82	84.950	ENSACIG00000015982	polr2a	81	85.527	Amphilophus_citrinellus
ENSEBUG00000013967	polr2a	92	87.508	ENSAOCG00000004255	polr2a	89	87.523	Amphiprion_ocellaris
ENSEBUG00000013967	polr2a	82	87.508	ENSAPEG00000012623	polr2a	82	87.523	Amphiprion_percula
ENSEBUG00000013967	polr2a	82	87.383	ENSATEG00000019644	polr2a	82	87.399	Anabas_testudineus
ENSEBUG00000013967	polr2a	82	87.197	ENSACAG00000014561	POLR2A	82	87.788	Anolis_carolinensis
ENSEBUG00000013967	polr2a	82	87.430	ENSANAG00000020093	-	81	88.022	Aotus_nancymaae
ENSEBUG00000013967	polr2a	82	87.135	ENSACLG00000006735	polr2a	82	87.149	Astatotilapia_calliptera
ENSEBUG00000013967	polr2a	82	87.259	ENSAMXG00000020046	polr2a	82	87.274	Astyanax_mexicanus
ENSEBUG00000013967	polr2a	82	87.430	ENSBTAG00000046765	POLR2A	81	88.022	Bos_taurus
ENSEBUG00000013967	polr2a	82	87.492	ENSCAFG00000016532	POLR2A	99	88.085	Canis_familiaris
ENSEBUG00000013967	polr2a	82	86.567	ENSCAFG00020007929	-	81	87.157	Canis_lupus_dingo
ENSEBUG00000013967	polr2a	82	87.430	ENSCHIG00000027173	-	81	88.022	Capra_hircus
ENSEBUG00000013967	polr2a	85	87.759	ENSTSYG00000012803	-	81	86.276	Carlito_syrichta
ENSEBUG00000013967	polr2a	97	85.253	ENSCAPG00000001882	-	98	84.174	Cavia_aperea
ENSEBUG00000013967	polr2a	99	84.136	ENSCPOG00000014812	-	97	85.866	Cavia_porcellus
ENSEBUG00000013967	polr2a	82	87.430	ENSCCAG00000020938	-	81	88.022	Cebus_capucinus
ENSEBUG00000013967	polr2a	82	87.492	ENSCATG00000013680	-	81	88.085	Cercocebus_atys
ENSEBUG00000013967	polr2a	82	87.306	ENSCLAG00000012196	-	81	87.898	Chinchilla_lanigera
ENSEBUG00000013967	polr2a	82	79.172	ENSCSAG00000011644	-	81	79.740	Chlorocebus_sabaeus
ENSEBUG00000013967	polr2a	82	84.596	ENSCPBG00000012697	POLR2A	93	85.645	Chrysemys_picta_bellii
ENSEBUG00000013967	polr2a	98	74.970	ENSCING00000007884	-	99	75.666	Ciona_intestinalis
ENSEBUG00000013967	polr2a	99	75.138	ENSCSAVG00000008334	-	99	74.069	Ciona_savignyi
ENSEBUG00000013967	polr2a	82	86.808	ENSCANG00000010622	-	82	86.597	Colobus_angolensis_palliatus
ENSEBUG00000013967	polr2a	82	82.171	ENSCGRG00001003538	Polr2a	84	81.751	Cricetulus_griseus_chok1gshd
ENSEBUG00000013967	polr2a	82	85.099	ENSCGRG00000012105	Polr2a	86	85.083	Cricetulus_griseus_crigri
ENSEBUG00000013967	polr2a	82	87.135	ENSCSEG00000002635	polr2a	82	87.149	Cynoglossus_semilaevis
ENSEBUG00000013967	polr2a	82	87.321	ENSCVAG00000005156	polr2a	82	87.336	Cyprinodon_variegatus
ENSEBUG00000013967	polr2a	82	86.584	ENSDARG00000099966	polr2a	81	86.650	Danio_rerio
ENSEBUG00000013967	polr2a	82	83.005	ENSDNOG00000016482	-	81	83.395	Dasypus_novemcinctus
ENSEBUG00000013967	polr2a	82	87.430	ENSDORG00000008667	Polr2a	81	88.022	Dipodomys_ordii
ENSEBUG00000013967	polr2a	99	69.352	FBgn0003277	RpII215	98	74.953	Drosophila_melanogaster
ENSEBUG00000013967	polr2a	94	83.740	ENSETEG00000002540	-	87	85.456	Echinops_telfairi
ENSEBUG00000013967	polr2a	82	85.563	ENSEASG00005019114	-	82	86.151	Equus_asinus_asinus
ENSEBUG00000013967	polr2a	82	87.368	ENSECAG00000018485	POLR2A	81	87.960	Equus_caballus
ENSEBUG00000013967	polr2a	78	88.665	ENSEEUG00000001154	-	94	88.665	Erinaceus_europaeus
ENSEBUG00000013967	polr2a	91	83.447	ENSELUG00000014284	polr2a	83	84.129	Esox_lucius
ENSEBUG00000013967	polr2a	82	87.492	ENSFDAG00000008287	-	81	88.085	Fukomys_damarensis
ENSEBUG00000013967	polr2a	89	87.383	ENSFHEG00000001768	polr2a	84	87.399	Fundulus_heteroclitus
ENSEBUG00000013967	polr2a	99	82.892	ENSGMOG00000007725	polr2a	100	82.979	Gadus_morhua
ENSEBUG00000013967	polr2a	98	83.945	ENSGAFG00000005389	polr2a	99	85.340	Gambusia_affinis
ENSEBUG00000013967	polr2a	99	84.258	ENSGACG00000019366	polr2a	100	83.881	Gasterosteus_aculeatus
ENSEBUG00000013967	polr2a	82	85.661	ENSGGOG00000014800	-	96	87.360	Gorilla_gorilla
ENSEBUG00000013967	polr2a	90	86.748	ENSHBUG00000018937	polr2a	84	87.149	Haplochromis_burtoni
ENSEBUG00000013967	polr2a	82	87.492	ENSHGLG00000012381	POLR2A	81	88.085	Heterocephalus_glaber_female
ENSEBUG00000013967	polr2a	82	87.492	ENSHGLG00100014843	POLR2A	81	88.085	Heterocephalus_glaber_male
ENSEBUG00000013967	polr2a	82	86.762	ENSHCOG00000011874	polr2a	82	86.775	Hippocampus_comes
ENSEBUG00000013967	polr2a	82	86.948	ENSIPUG00000002613	Polr2a	82	86.962	Ictalurus_punctatus
ENSEBUG00000013967	polr2a	82	87.430	ENSSTOG00000001304	-	81	88.022	Ictidomys_tridecemlineatus
ENSEBUG00000013967	polr2a	82	87.368	ENSJJAG00000013049	Polr2a	81	87.960	Jaculus_jaculus
ENSEBUG00000013967	polr2a	78	85.510	ENSKMAG00000016343	polr2a	85	85.510	Kryptolebias_marmoratus
ENSEBUG00000013967	polr2a	82	87.259	ENSLBEG00000027652	polr2a	82	87.274	Labrus_bergylta
ENSEBUG00000013967	polr2a	80	79.760	ENSLACG00000012071	POLR2A	81	79.759	Latimeria_chalumnae
ENSEBUG00000013967	polr2a	87	87.634	ENSLOCG00000013863	polr2a	85	87.508	Lepisosteus_oculatus
ENSEBUG00000013967	polr2a	99	84.455	ENSLAFG00000008626	-	85	87.960	Loxodonta_africana
ENSEBUG00000013967	polr2a	50	87.692	ENSMFAG00000007042	-	99	87.692	Macaca_fascicularis
ENSEBUG00000013967	polr2a	82	87.492	ENSMMUG00000023620	-	91	88.085	Macaca_mulatta
ENSEBUG00000013967	polr2a	82	87.057	ENSMNEG00000040407	-	81	87.648	Macaca_nemestrina
ENSEBUG00000013967	polr2a	80	83.123	ENSMLEG00000030263	-	99	87.692	Mandrillus_leucophaeus
ENSEBUG00000013967	polr2a	82	87.632	ENSMAMG00000003351	polr2a	82	87.648	Mastacembelus_armatus
ENSEBUG00000013967	polr2a	82	87.135	ENSMZEG00005021429	polr2a	82	87.149	Maylandia_zebra
ENSEBUG00000013967	polr2a	50	88.991	ENSMAUG00000021055	-	99	88.991	Mesocricetus_auratus
ENSEBUG00000013967	polr2a	82	87.430	ENSMICG00000013372	-	98	88.078	Microcebus_murinus
ENSEBUG00000013967	polr2a	98	84.214	ENSMOCG00000018279	Polr2a	89	84.217	Microtus_ochrogaster
ENSEBUG00000013967	polr2a	94	87.135	ENSMMOG00000012515	polr2a	82	87.149	Mola_mola
ENSEBUG00000013967	polr2a	82	87.368	ENSMODG00000007009	-	81	87.960	Monodelphis_domestica
ENSEBUG00000013967	polr2a	92	87.221	ENSMALG00000008716	polr2a	88	85.340	Monopterus_albus
ENSEBUG00000013967	polr2a	82	87.430	MGP_CAROLIEiJ_G0016587	Polr2a	81	88.022	Mus_caroli
ENSEBUG00000013967	polr2a	82	87.430	ENSMUSG00000005198	Polr2a	81	88.022	Mus_musculus
ENSEBUG00000013967	polr2a	82	85.440	MGP_PahariEiJ_G0017718	Polr2a	81	86.025	Mus_pahari
ENSEBUG00000013967	polr2a	82	87.430	MGP_SPRETEiJ_G0017423	Polr2a	81	88.022	Mus_spretus
ENSEBUG00000013967	polr2a	82	87.430	ENSMPUG00000009648	-	81	88.022	Mustela_putorius_furo
ENSEBUG00000013967	polr2a	82	87.081	ENSMLUG00000009088	-	81	87.671	Myotis_lucifugus
ENSEBUG00000013967	polr2a	82	87.430	ENSNGAG00000002543	Polr2a	81	88.022	Nannospalax_galili
ENSEBUG00000013967	polr2a	82	84.764	ENSNBRG00000002005	polr2a	81	85.402	Neolamprologus_brichardi
ENSEBUG00000013967	polr2a	82	86.282	ENSNLEG00000009460	-	81	86.870	Nomascus_leucogenys
ENSEBUG00000013967	polr2a	92	89.934	ENSMEUG00000008611	-	93	89.934	Notamacropus_eugenii
ENSEBUG00000013967	polr2a	79	88.020	ENSOPRG00000015116	-	99	87.840	Ochotona_princeps
ENSEBUG00000013967	polr2a	83	87.849	ENSODEG00000017674	-	84	84.860	Octodon_degus
ENSEBUG00000013967	polr2a	82	87.446	ENSONIG00000009231	polr2a	82	87.461	Oreochromis_niloticus
ENSEBUG00000013967	polr2a	99	84.389	ENSOCUG00000017929	-	99	87.898	Oryctolagus_cuniculus
ENSEBUG00000013967	polr2a	82	87.135	ENSORLG00000006431	polr2a	82	87.149	Oryzias_latipes
ENSEBUG00000013967	polr2a	82	87.135	ENSORLG00020010235	polr2a	82	87.149	Oryzias_latipes_hni
ENSEBUG00000013967	polr2a	82	87.135	ENSORLG00015007075	polr2a	82	87.149	Oryzias_latipes_hsok
ENSEBUG00000013967	polr2a	96	85.753	ENSOMEG00000010713	polr2a	99	87.211	Oryzias_melastigma
ENSEBUG00000013967	polr2a	82	87.554	ENSOGAG00000033608	-	81	88.147	Otolemur_garnettii
ENSEBUG00000013967	polr2a	83	87.607	ENSOARG00000013874	-	85	88.022	Ovis_aries
ENSEBUG00000013967	polr2a	87	85.285	ENSPPAG00000043734	-	81	86.170	Pan_paniscus
ENSEBUG00000013967	polr2a	82	86.282	ENSPTRG00000008691	POLR2A	81	86.870	Pan_troglodytes
ENSEBUG00000013967	polr2a	82	86.808	ENSPANG00000024099	-	81	87.399	Papio_anubis
ENSEBUG00000013967	polr2a	77	85.939	ENSPKIG00000005727	polr2a	84	77.688	Paramormyrops_kingsleyae
ENSEBUG00000013967	polr2a	98	85.775	ENSPSIG00000014006	POLR2A	99	86.248	Pelodiscus_sinensis
ENSEBUG00000013967	polr2a	99	87.020	ENSPMGG00000019734	polr2a	99	87.399	Periophthalmus_magnuspinnatus
ENSEBUG00000013967	polr2a	82	87.430	ENSPEMG00000012521	Polr2a	81	88.022	Peromyscus_maniculatus_bairdii
ENSEBUG00000013967	polr2a	82	87.376	ENSPCIG00000028851	-	82	87.960	Phascolarctos_cinereus
ENSEBUG00000013967	polr2a	89	87.259	ENSPFOG00000007890	polr2a	84	87.274	Poecilia_formosa
ENSEBUG00000013967	polr2a	89	87.259	ENSPLAG00000007399	polr2a	84	87.274	Poecilia_latipinna
ENSEBUG00000013967	polr2a	89	87.259	ENSPMEG00000002071	polr2a	84	87.274	Poecilia_mexicana
ENSEBUG00000013967	polr2a	82	87.259	ENSPREG00000013122	polr2a	82	87.274	Poecilia_reticulata
ENSEBUG00000013967	polr2a	82	87.430	ENSPPYG00000007924	-	82	88.022	Pongo_abelii
ENSEBUG00000013967	polr2a	73	88.889	ENSPCAG00000006951	-	73	88.889	Procavia_capensis
ENSEBUG00000013967	polr2a	82	86.252	ENSPCOG00000025260	-	81	86.836	Propithecus_coquereli
ENSEBUG00000013967	polr2a	82	87.181	ENSPVAG00000005069	-	81	87.773	Pteropus_vampyrus
ENSEBUG00000013967	polr2a	82	87.197	ENSPNYG00000022340	polr2a	90	81.745	Pundamilia_nyererei
ENSEBUG00000013967	polr2a	82	87.446	ENSPNAG00000011237	polr2a	82	87.461	Pygocentrus_nattereri
ENSEBUG00000013967	polr2a	82	87.492	ENSRNOG00000028834	Polr2a	81	88.085	Rattus_norvegicus
ENSEBUG00000013967	polr2a	82	87.181	ENSRBIG00000002471	-	91	87.773	Rhinopithecus_bieti
ENSEBUG00000013967	polr2a	82	87.492	ENSRROG00000029583	-	87	87.336	Rhinopithecus_roxellana
ENSEBUG00000013967	polr2a	81	50.591	YDL140C	RPO21	99	71.304	Saccharomyces_cerevisiae
ENSEBUG00000013967	polr2a	82	87.430	ENSSBOG00000000808	-	81	88.022	Saimiri_boliviensis_boliviensis
ENSEBUG00000013967	polr2a	88	87.368	ENSSHAG00000002858	-	92	87.960	Sarcophilus_harrisii
ENSEBUG00000013967	polr2a	82	87.383	ENSSFOG00015023275	polr2a	81	87.399	Scleropages_formosus
ENSEBUG00000013967	polr2a	82	86.886	ENSSMAG00000009137	polr2a	82	86.900	Scophthalmus_maximus
ENSEBUG00000013967	polr2a	82	87.570	ENSSDUG00000020466	polr2a	82	87.586	Seriola_dumerili
ENSEBUG00000013967	polr2a	82	87.570	ENSSLDG00000020613	polr2a	82	87.586	Seriola_lalandi_dorsalis
ENSEBUG00000013967	polr2a	93	83.633	ENSSARG00000005875	-	99	84.913	Sorex_araneus
ENSEBUG00000013967	polr2a	99	87.446	ENSSPAG00000016741	polr2a	92	87.461	Stegastes_partitus
ENSEBUG00000013967	polr2a	82	86.559	ENSSSCG00000028278	-	81	87.149	Sus_scrofa
ENSEBUG00000013967	polr2a	99	79.752	ENSTRUG00000012320	polr2a	81	79.988	Takifugu_rubripes
ENSEBUG00000013967	polr2a	99	86.140	ENSTNIG00000010136	polr2a	99	86.151	Tetraodon_nigroviridis
ENSEBUG00000013967	polr2a	74	89.655	ENSTBEG00000013294	-	58	89.655	Tupaia_belangeri
ENSEBUG00000013967	polr2a	82	85.750	ENSTTRG00000014273	-	81	86.338	Tursiops_truncatus
ENSEBUG00000013967	polr2a	95	85.227	ENSUAMG00000014866	-	87	87.866	Ursus_americanus
ENSEBUG00000013967	polr2a	81	85.770	ENSUMAG00000015732	-	80	86.505	Ursus_maritimus
ENSEBUG00000013967	polr2a	58	91.848	ENSVPAG00000008842	-	75	91.848	Vicugna_pacos
ENSEBUG00000013967	polr2a	83	87.669	ENSVVUG00000027878	-	83	88.085	Vulpes_vulpes
ENSEBUG00000013967	polr2a	81	87.728	ENSXETG00000012465	polr2a	81	88.328	Xenopus_tropicalis
ENSEBUG00000013967	polr2a	86	85.395	ENSXCOG00000001804	polr2a	94	85.278	Xiphophorus_couchianus
ENSEBUG00000013967	polr2a	82	87.197	ENSXMAG00000015687	polr2a	82	87.211	Xiphophorus_maculatus