EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000014243 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 70283 bases
Position: chrFYBX02010448.1:635872-706154
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000023131	RNA_ligase	PF09414.10	5.8e-07	1	1
ENSEBUP00000023109	RNA_ligase	PF09414.10	5.8e-07	1	1
ENSEBUP00000023119	RNA_ligase	PF09414.10	6.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000023704	-	6399	-	ENSEBUP00000023131	950 (aa)	-	-
ENSEBUT00000023685	-	6630	-	ENSEBUP00000023109	954 (aa)	-	-
ENSEBUT00000023695	-	6489	-	ENSEBUP00000023119	980 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000014243's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000014243's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000014243	lig4	99	43.816	ENSG00000174405	LIG4	99	43.878	Homo_sapiens
ENSEBUG00000014243	lig4	99	44.654	ENSAPOG00000000866	lig4	99	44.654	Acanthochromis_polyacanthus
ENSEBUG00000014243	lig4	99	43.783	ENSAMEG00000019685	LIG4	99	43.783	Ailuropoda_melanoleuca
ENSEBUG00000014243	lig4	99	44.723	ENSACIG00000018309	lig4	99	44.932	Amphilophus_citrinellus
ENSEBUG00000014243	lig4	99	43.920	ENSAOCG00000011768	lig4	99	43.920	Amphiprion_ocellaris
ENSEBUG00000014243	lig4	99	44.025	ENSAPEG00000017815	lig4	99	44.025	Amphiprion_percula
ENSEBUG00000014243	lig4	98	44.857	ENSATEG00000005583	lig4	98	45.387	Anabas_testudineus
ENSEBUG00000014243	lig4	96	42.950	ENSAPLG00000001673	LIG4	99	43.045	Anas_platyrhynchos
ENSEBUG00000014243	lig4	98	44.492	ENSACAG00000014566	LIG4	99	44.540	Anolis_carolinensis
ENSEBUG00000014243	lig4	99	42.902	ENSANAG00000012446	LIG4	99	42.902	Aotus_nancymaae
ENSEBUG00000014243	lig4	99	44.038	ENSACLG00000027051	lig4	99	44.456	Astatotilapia_calliptera
ENSEBUG00000014243	lig4	99	43.438	ENSAMXG00000008192	lig4	95	43.260	Astyanax_mexicanus
ENSEBUG00000014243	lig4	99	44.071	ENSBTAG00000015868	LIG4	99	44.071	Bos_taurus
ENSEBUG00000014243	lig4	99	42.902	ENSCJAG00000014689	LIG4	99	42.902	Callithrix_jacchus
ENSEBUG00000014243	lig4	99	43.592	ENSCAFG00000006031	LIG4	99	43.592	Canis_familiaris
ENSEBUG00000014243	lig4	99	43.592	ENSCAFG00020021230	LIG4	99	43.592	Canis_lupus_dingo
ENSEBUG00000014243	lig4	99	44.235	ENSCHIG00000001019	LIG4	99	44.235	Capra_hircus
ENSEBUG00000014243	lig4	98	43.644	ENSCAPG00000006284	LIG4	99	43.644	Cavia_aperea
ENSEBUG00000014243	lig4	99	43.382	ENSCPOG00000014266	LIG4	99	43.382	Cavia_porcellus
ENSEBUG00000014243	lig4	99	43.365	ENSCCAG00000019971	LIG4	99	43.365	Cebus_capucinus
ENSEBUG00000014243	lig4	98	43.565	ENSCATG00000021075	LIG4	99	43.565	Cercocebus_atys
ENSEBUG00000014243	lig4	98	43.750	ENSCLAG00000003376	LIG4	99	43.750	Chinchilla_lanigera
ENSEBUG00000014243	lig4	99	43.323	ENSCSAG00000000211	LIG4	99	43.323	Chlorocebus_sabaeus
ENSEBUG00000014243	lig4	98	43.432	ENSCPBG00000023291	LIG4	99	42.992	Chrysemys_picta_bellii
ENSEBUG00000014243	lig4	70	41.159	ENSCING00000009536	-	97	41.159	Ciona_intestinalis
ENSEBUG00000014243	lig4	83	40.428	ENSCSAVG00000010336	-	98	40.428	Ciona_savignyi
ENSEBUG00000014243	lig4	99	43.533	ENSCANG00000005805	LIG4	99	43.533	Colobus_angolensis_palliatus
ENSEBUG00000014243	lig4	99	43.913	ENSCGRG00001012072	Lig4	99	43.913	Cricetulus_griseus_chok1gshd
ENSEBUG00000014243	lig4	99	43.913	ENSCGRG00000013417	Lig4	99	43.913	Cricetulus_griseus_crigri
ENSEBUG00000014243	lig4	97	44.111	ENSCSEG00000013905	lig4	96	44.111	Cynoglossus_semilaevis
ENSEBUG00000014243	lig4	99	45.195	ENSCVAG00000007896	lig4	99	45.195	Cyprinodon_variegatus
ENSEBUG00000014243	lig4	99	42.842	ENSDARG00000060620	lig4	99	42.842	Danio_rerio
ENSEBUG00000014243	lig4	99	42.932	ENSDNOG00000000513	LIG4	99	42.932	Dasypus_novemcinctus
ENSEBUG00000014243	lig4	99	43.189	ENSDORG00000027303	Lig4	99	43.189	Dipodomys_ordii
ENSEBUG00000014243	lig4	98	43.326	ENSETEG00000015563	LIG4	99	43.763	Echinops_telfairi
ENSEBUG00000014243	lig4	99	43.533	ENSEASG00005022073	LIG4	99	43.631	Equus_asinus_asinus
ENSEBUG00000014243	lig4	99	43.638	ENSECAG00000003257	LIG4	99	43.737	Equus_caballus
ENSEBUG00000014243	lig4	99	44.538	ENSELUG00000006787	lig4	99	44.921	Esox_lucius
ENSEBUG00000014243	lig4	99	44.105	ENSFCAG00000031985	LIG4	99	44.105	Felis_catus
ENSEBUG00000014243	lig4	87	46.163	ENSFALG00000004214	LIG4	97	46.163	Ficedula_albicollis
ENSEBUG00000014243	lig4	99	43.861	ENSFDAG00000008973	LIG4	99	43.861	Fukomys_damarensis
ENSEBUG00000014243	lig4	99	44.503	ENSFHEG00000007398	lig4	92	44.593	Fundulus_heteroclitus
ENSEBUG00000014243	lig4	85	46.097	ENSGMOG00000012843	lig4	99	46.097	Gadus_morhua
ENSEBUG00000014243	lig4	99	42.408	ENSGALG00000016854	LIG4	99	42.600	Gallus_gallus
ENSEBUG00000014243	lig4	99	44.514	ENSGAFG00000019779	lig4	96	45.141	Gambusia_affinis
ENSEBUG00000014243	lig4	98	45.820	ENSGACG00000014135	lig4	99	45.820	Gasterosteus_aculeatus
ENSEBUG00000014243	lig4	99	43.606	ENSGGOG00000027771	LIG4	99	43.606	Gorilla_gorilla
ENSEBUG00000014243	lig4	99	44.142	ENSHBUG00000006245	lig4	99	44.561	Haplochromis_burtoni
ENSEBUG00000014243	lig4	99	43.743	ENSHGLG00000000718	LIG4	99	43.743	Heterocephalus_glaber_female
ENSEBUG00000014243	lig4	99	43.743	ENSHGLG00100003265	LIG4	99	43.743	Heterocephalus_glaber_male
ENSEBUG00000014243	lig4	99	45.331	ENSHCOG00000012010	lig4	99	45.331	Hippocampus_comes
ENSEBUG00000014243	lig4	98	44.597	ENSIPUG00000013748	lig4	98	44.597	Ictalurus_punctatus
ENSEBUG00000014243	lig4	99	43.187	ENSSTOG00000024303	LIG4	99	43.187	Ictidomys_tridecemlineatus
ENSEBUG00000014243	lig4	99	43.022	ENSJJAG00000006750	Lig4	99	43.386	Jaculus_jaculus
ENSEBUG00000014243	lig4	98	45.291	ENSKMAG00000001149	lig4	99	45.291	Kryptolebias_marmoratus
ENSEBUG00000014243	lig4	90	43.880	ENSLBEG00000014578	lig4	99	44.111	Labrus_bergylta
ENSEBUG00000014243	lig4	98	44.068	ENSLACG00000003282	LIG4	98	44.068	Latimeria_chalumnae
ENSEBUG00000014243	lig4	99	44.784	ENSLOCG00000008901	lig4	97	44.784	Lepisosteus_oculatus
ENSEBUG00000014243	lig4	99	43.606	ENSLAFG00000031152	LIG4	99	43.606	Loxodonta_africana
ENSEBUG00000014243	lig4	99	43.323	ENSMFAG00000037235	LIG4	99	43.323	Macaca_fascicularis
ENSEBUG00000014243	lig4	99	43.428	ENSMMUG00000008874	LIG4	99	43.428	Macaca_mulatta
ENSEBUG00000014243	lig4	99	43.323	ENSMNEG00000023575	LIG4	99	43.323	Macaca_nemestrina
ENSEBUG00000014243	lig4	99	43.638	ENSMLEG00000026720	LIG4	99	43.638	Mandrillus_leucophaeus
ENSEBUG00000014243	lig4	99	44.802	ENSMAMG00000008472	lig4	99	44.802	Mastacembelus_armatus
ENSEBUG00000014243	lig4	99	44.038	ENSMZEG00005001855	lig4	99	44.456	Maylandia_zebra
ENSEBUG00000014243	lig4	98	42.736	ENSMGAG00000015532	LIG4	98	42.934	Meleagris_gallopavo
ENSEBUG00000014243	lig4	98	44.093	ENSMOCG00000019000	Lig4	99	44.093	Microtus_ochrogaster
ENSEBUG00000014243	lig4	99	44.984	ENSMMOG00000004390	lig4	99	45.090	Mola_mola
ENSEBUG00000014243	lig4	98	43.054	ENSMODG00000025064	LIG4	99	43.054	Monodelphis_domestica
ENSEBUG00000014243	lig4	99	44.798	ENSMALG00000008555	lig4	99	44.798	Monopterus_albus
ENSEBUG00000014243	lig4	99	44.084	MGP_CAROLIEiJ_G0030809	Lig4	99	44.084	Mus_caroli
ENSEBUG00000014243	lig4	99	43.606	ENSMUSG00000049717	Lig4	99	43.606	Mus_musculus
ENSEBUG00000014243	lig4	99	43.933	MGP_PahariEiJ_G0021270	Lig4	99	43.933	Mus_pahari
ENSEBUG00000014243	lig4	99	43.232	MGP_SPRETEiJ_G0031917	Lig4	99	43.326	Mus_spretus
ENSEBUG00000014243	lig4	99	44.025	ENSMPUG00000018675	LIG4	99	44.025	Mustela_putorius_furo
ENSEBUG00000014243	lig4	99	42.647	ENSMLUG00000001267	LIG4	99	42.736	Myotis_lucifugus
ENSEBUG00000014243	lig4	98	43.008	ENSNGAG00000013258	Lig4	99	43.008	Nannospalax_galili
ENSEBUG00000014243	lig4	99	43.933	ENSNBRG00000021252	lig4	99	44.351	Neolamprologus_brichardi
ENSEBUG00000014243	lig4	99	43.501	ENSNLEG00000007888	LIG4	99	43.501	Nomascus_leucogenys
ENSEBUG00000014243	lig4	99	43.249	ENSOPRG00000005765	LIG4	99	43.249	Ochotona_princeps
ENSEBUG00000014243	lig4	99	43.218	ENSODEG00000019683	LIG4	99	43.218	Octodon_degus
ENSEBUG00000014243	lig4	99	44.179	ENSONIG00000011969	lig4	99	44.387	Oreochromis_niloticus
ENSEBUG00000014243	lig4	99	43.127	ENSOCUG00000015734	LIG4	99	43.127	Oryctolagus_cuniculus
ENSEBUG00000014243	lig4	99	44.699	ENSORLG00000004041	lig4	99	44.699	Oryzias_latipes
ENSEBUG00000014243	lig4	99	44.699	ENSORLG00020019607	lig4	99	44.699	Oryzias_latipes_hni
ENSEBUG00000014243	lig4	99	44.491	ENSORLG00015017754	lig4	99	44.491	Oryzias_latipes_hsok
ENSEBUG00000014243	lig4	76	47.157	ENSOMEG00000003459	lig4	99	47.157	Oryzias_melastigma
ENSEBUG00000014243	lig4	98	43.584	ENSOGAG00000032120	LIG4	98	43.683	Otolemur_garnettii
ENSEBUG00000014243	lig4	83	46.768	ENSOARG00000005590	LIG4	99	46.768	Ovis_aries
ENSEBUG00000014243	lig4	99	43.816	ENSPPAG00000032998	LIG4	99	43.816	Pan_paniscus
ENSEBUG00000014243	lig4	99	44.105	ENSPPRG00000017804	LIG4	99	44.105	Panthera_pardus
ENSEBUG00000014243	lig4	99	44.105	ENSPTIG00000010051	LIG4	99	44.105	Panthera_tigris_altaica
ENSEBUG00000014243	lig4	99	43.920	ENSPTRG00000006025	LIG4	99	43.920	Pan_troglodytes
ENSEBUG00000014243	lig4	98	43.671	ENSPANG00000007562	LIG4	99	43.671	Papio_anubis
ENSEBUG00000014243	lig4	99	44.456	ENSPKIG00000011645	lig4	98	44.456	Paramormyrops_kingsleyae
ENSEBUG00000014243	lig4	98	43.690	ENSPSIG00000001504	LIG4	98	43.690	Pelodiscus_sinensis
ENSEBUG00000014243	lig4	98	44.941	ENSPMGG00000013486	lig4	99	45.283	Periophthalmus_magnuspinnatus
ENSEBUG00000014243	lig4	99	43.246	ENSPEMG00000000076	Lig4	99	43.246	Peromyscus_maniculatus_bairdii
ENSEBUG00000014243	lig4	98	42.524	ENSPCIG00000021882	LIG4	99	42.719	Phascolarctos_cinereus
ENSEBUG00000014243	lig4	98	44.551	ENSPFOG00000000797	lig4	99	45.016	Poecilia_formosa
ENSEBUG00000014243	lig4	98	44.444	ENSPLAG00000001196	lig4	99	44.911	Poecilia_latipinna
ENSEBUG00000014243	lig4	98	44.658	ENSPMEG00000021353	lig4	99	45.121	Poecilia_mexicana
ENSEBUG00000014243	lig4	98	44.243	ENSPREG00000007323	lig4	99	45.026	Poecilia_reticulata
ENSEBUG00000014243	lig4	99	43.337	ENSPPYG00000005540	LIG4	99	43.337	Pongo_abelii
ENSEBUG00000014243	lig4	99	43.354	ENSPVAG00000016403	LIG4	99	43.354	Pteropus_vampyrus
ENSEBUG00000014243	lig4	99	44.025	ENSPNYG00000009660	lig4	99	44.444	Pundamilia_nyererei
ENSEBUG00000014243	lig4	98	43.671	ENSPNAG00000028069	LIG4	99	44.198	Pygocentrus_nattereri
ENSEBUG00000014243	lig4	98	43.671	ENSPNAG00000028056	lig4	99	44.198	Pygocentrus_nattereri
ENSEBUG00000014243	lig4	99	44.025	ENSRNOG00000014605	Lig4	99	44.025	Rattus_norvegicus
ENSEBUG00000014243	lig4	99	43.113	ENSRBIG00000039962	LIG4	99	43.113	Rhinopithecus_bieti
ENSEBUG00000014243	lig4	99	43.638	ENSRROG00000006040	LIG4	99	43.638	Rhinopithecus_roxellana
ENSEBUG00000014243	lig4	99	42.589	ENSSBOG00000019029	LIG4	99	42.589	Saimiri_boliviensis_boliviensis
ENSEBUG00000014243	lig4	98	41.994	ENSSHAG00000009525	LIG4	99	41.994	Sarcophilus_harrisii
ENSEBUG00000014243	lig4	99	43.717	ENSSFOG00015012835	lig4	99	43.717	Scleropages_formosus
ENSEBUG00000014243	lig4	99	42.389	ENSSMAG00000011267	lig4	99	42.389	Scophthalmus_maximus
ENSEBUG00000014243	lig4	99	43.783	ENSSDUG00000010343	lig4	99	43.783	Seriola_dumerili
ENSEBUG00000014243	lig4	98	43.326	ENSSLDG00000003239	lig4	98	43.326	Seriola_lalandi_dorsalis
ENSEBUG00000014243	lig4	98	44.269	ENSSARG00000006573	LIG4	99	44.269	Sorex_araneus
ENSEBUG00000014243	lig4	92	43.182	ENSSPUG00000002444	LIG4	99	43.333	Sphenodon_punctatus
ENSEBUG00000014243	lig4	99	45.243	ENSSPAG00000001609	lig4	99	45.455	Stegastes_partitus
ENSEBUG00000014243	lig4	99	42.316	ENSSSCG00000009540	LIG4	99	42.316	Sus_scrofa
ENSEBUG00000014243	lig4	98	43.492	ENSTGUG00000010795	LIG4	99	43.590	Taeniopygia_guttata
ENSEBUG00000014243	lig4	99	44.838	ENSTRUG00000009984	lig4	99	44.838	Takifugu_rubripes
ENSEBUG00000014243	lig4	98	44.715	ENSTNIG00000010348	lig4	99	44.879	Tetraodon_nigroviridis
ENSEBUG00000014243	lig4	99	44.281	ENSTBEG00000017741	LIG4	99	44.281	Tupaia_belangeri
ENSEBUG00000014243	lig4	99	43.127	ENSTTRG00000012660	LIG4	99	43.266	Tursiops_truncatus
ENSEBUG00000014243	lig4	99	43.776	ENSUAMG00000003773	LIG4	99	43.776	Ursus_americanus
ENSEBUG00000014243	lig4	98	44.327	ENSXETG00000002654	lig4	98	44.327	Xenopus_tropicalis
ENSEBUG00000014243	lig4	98	44.563	ENSXCOG00000017401	lig4	99	45.026	Xiphophorus_couchianus
ENSEBUG00000014243	lig4	99	44.305	ENSXMAG00000015142	lig4	100	44.620	Xiphophorus_maculatus