EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000014515 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 74592 bases
Position: chrFYBX02010611.1:15227-89818
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000023581	PPR	PF01535.20	6e-12	1	2
ENSEBUP00000023581	PPR	PF01535.20	6e-12	2	2
ENSEBUP00000023592	PPR	PF01535.20	1e-11	1	2
ENSEBUP00000023592	PPR	PF01535.20	1e-11	2	2
ENSEBUP00000023558	PPR	PF01535.20	7e-11	1	2
ENSEBUP00000023558	PPR	PF01535.20	7e-11	2	2
ENSEBUP00000023604	PPR	PF01535.20	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000024181	-	2313	-	ENSEBUP00000023604	542 (aa)	-	-
ENSEBUT00000024168	-	3282	-	ENSEBUP00000023592	717 (aa)	-	-
ENSEBUT00000024134	-	3200	-	ENSEBUP00000023558	591 (aa)	-	-
ENSEBUT00000024157	-	2873	-	ENSEBUP00000023581	679 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000014515's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000014515's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000014515	ptcd1	99	41.833	ENSG00000106246	PTCD1	90	41.033	Homo_sapiens
ENSEBUG00000014515	ptcd1	99	41.833	ENSG00000248919	ATP5MF-PTCD1	84	41.033	Homo_sapiens
ENSEBUG00000014515	ptcd1	69	51.546	ENSAPOG00000010679	ptcd1	61	51.546	Acanthochromis_polyacanthus
ENSEBUG00000014515	ptcd1	99	41.472	ENSAMEG00000006224	-	86	40.529	Ailuropoda_melanoleuca
ENSEBUG00000014515	ptcd1	93	38.628	ENSACIG00000017861	ptcd1	83	38.658	Amphilophus_citrinellus
ENSEBUG00000014515	ptcd1	93	49.660	ENSAOCG00000020741	-	68	49.660	Amphiprion_ocellaris
ENSEBUG00000014515	ptcd1	89	49.660	ENSAOCG00000022617	ptcd1	69	49.660	Amphiprion_ocellaris
ENSEBUG00000014515	ptcd1	93	52.577	ENSAPEG00000022632	ptcd1	71	52.577	Amphiprion_percula
ENSEBUG00000014515	ptcd1	94	38.006	ENSATEG00000007016	ptcd1	82	39.408	Anabas_testudineus
ENSEBUG00000014515	ptcd1	98	35.275	ENSAPLG00000006862	-	94	36.842	Anas_platyrhynchos
ENSEBUG00000014515	ptcd1	99	40.336	ENSACAG00000012871	-	81	39.489	Anolis_carolinensis
ENSEBUG00000014515	ptcd1	97	43.127	ENSANAG00000035790	-	90	42.308	Aotus_nancymaae
ENSEBUG00000014515	ptcd1	94	40.323	ENSACLG00000002824	ptcd1	80	40.476	Astatotilapia_calliptera
ENSEBUG00000014515	ptcd1	97	38.422	ENSAMXG00000037292	ptcd1	88	38.253	Astyanax_mexicanus
ENSEBUG00000014515	ptcd1	99	42.466	ENSBTAG00000020440	-	80	40.942	Bos_taurus
ENSEBUG00000014515	ptcd1	99	41.837	ENSCJAG00000015815	-	86	41.985	Callithrix_jacchus
ENSEBUG00000014515	ptcd1	96	42.632	ENSCAFG00000015055	-	78	42.006	Canis_familiaris
ENSEBUG00000014515	ptcd1	96	42.632	ENSCAFG00020014480	-	78	42.006	Canis_lupus_dingo
ENSEBUG00000014515	ptcd1	97	42.268	ENSCHIG00000027000	-	91	40.311	Capra_hircus
ENSEBUG00000014515	ptcd1	98	41.969	ENSTSYG00000029495	-	93	40.084	Carlito_syrichta
ENSEBUG00000014515	ptcd1	99	40.995	ENSCAPG00000014660	-	93	40.549	Cavia_aperea
ENSEBUG00000014515	ptcd1	99	41.794	ENSCPOG00000001780	-	91	40.230	Cavia_porcellus
ENSEBUG00000014515	ptcd1	99	41.256	ENSCCAG00000034025	-	93	39.859	Cebus_capucinus
ENSEBUG00000014515	ptcd1	99	41.327	ENSCATG00000040859	-	90	40.876	Cercocebus_atys
ENSEBUG00000014515	ptcd1	98	42.568	ENSCLAG00000006354	-	91	41.477	Chinchilla_lanigera
ENSEBUG00000014515	ptcd1	90	41.978	ENSCSAG00000017794	-	89	40.896	Chlorocebus_sabaeus
ENSEBUG00000014515	ptcd1	96	41.146	ENSCPBG00000020866	-	83	40.124	Chrysemys_picta_bellii
ENSEBUG00000014515	ptcd1	67	35.567	ENSCING00000007717	-	71	38.532	Ciona_intestinalis
ENSEBUG00000014515	ptcd1	99	42.399	ENSCANG00000023441	-	90	41.655	Colobus_angolensis_palliatus
ENSEBUG00000014515	ptcd1	97	41.696	ENSCGRG00001023686	Ptcd1	91	39.714	Cricetulus_griseus_chok1gshd
ENSEBUG00000014515	ptcd1	97	41.696	ENSCGRG00000015031	Ptcd1	90	39.856	Cricetulus_griseus_crigri
ENSEBUG00000014515	ptcd1	98	36.878	ENSCSEG00000002378	ptcd1	79	37.876	Cynoglossus_semilaevis
ENSEBUG00000014515	ptcd1	93	39.318	ENSCVAG00000003621	ptcd1	85	39.075	Cyprinodon_variegatus
ENSEBUG00000014515	ptcd1	93	39.138	ENSCVAG00000015826	ptcd1	80	38.915	Cyprinodon_variegatus
ENSEBUG00000014515	ptcd1	97	37.973	ENSDARG00000076176	ptcd1	88	37.818	Danio_rerio
ENSEBUG00000014515	ptcd1	99	41.766	ENSDNOG00000009957	-	89	41.108	Dasypus_novemcinctus
ENSEBUG00000014515	ptcd1	96	42.382	ENSDORG00000000740	Ptcd1	91	41.246	Dipodomys_ordii
ENSEBUG00000014515	ptcd1	98	41.003	ENSEASG00005002480	-	86	41.317	Equus_asinus_asinus
ENSEBUG00000014515	ptcd1	98	41.969	ENSECAG00000016617	-	86	41.317	Equus_caballus
ENSEBUG00000014515	ptcd1	99	38.240	ENSELUG00000016517	ptcd1	85	38.815	Esox_lucius
ENSEBUG00000014515	ptcd1	97	42.334	ENSFCAG00000015069	-	87	41.203	Felis_catus
ENSEBUG00000014515	ptcd1	99	41.117	ENSFALG00000013803	-	88	40.774	Ficedula_albicollis
ENSEBUG00000014515	ptcd1	97	42.784	ENSFDAG00000006393	-	92	40.514	Fukomys_damarensis
ENSEBUG00000014515	ptcd1	93	40.036	ENSFHEG00000012491	ptcd1	86	40.036	Fundulus_heteroclitus
ENSEBUG00000014515	ptcd1	93	39.318	ENSGMOG00000007639	ptcd1	87	39.460	Gadus_morhua
ENSEBUG00000014515	ptcd1	98	40.684	ENSGALG00000004711	-	87	40.303	Gallus_gallus
ENSEBUG00000014515	ptcd1	93	38.489	ENSGAFG00000013175	ptcd1	81	38.756	Gambusia_affinis
ENSEBUG00000014515	ptcd1	66	54.639	ENSGACG00000016607	ptcd1	74	50.347	Gasterosteus_aculeatus
ENSEBUG00000014515	ptcd1	91	40.959	ENSGAGG00000021832	-	85	39.326	Gopherus_agassizii
ENSEBUG00000014515	ptcd1	99	42.196	ENSGGOG00000015123	-	90	41.618	Gorilla_gorilla
ENSEBUG00000014515	ptcd1	94	39.964	ENSHBUG00000018275	ptcd1	80	40.159	Haplochromis_burtoni
ENSEBUG00000014515	ptcd1	97	43.304	ENSHGLG00000017621	-	91	41.202	Heterocephalus_glaber_female
ENSEBUG00000014515	ptcd1	97	43.304	ENSHGLG00100007218	-	91	41.202	Heterocephalus_glaber_male
ENSEBUG00000014515	ptcd1	67	49.490	ENSHCOG00000010784	ptcd1	69	47.566	Hippocampus_comes
ENSEBUG00000014515	ptcd1	97	41.824	ENSSTOG00000001682	-	92	39.831	Ictidomys_tridecemlineatus
ENSEBUG00000014515	ptcd1	97	42.314	ENSJJAG00000000319	Ptcd1	89	42.598	Jaculus_jaculus
ENSEBUG00000014515	ptcd1	93	37.794	ENSKMAG00000008708	ptcd1	80	38.547	Kryptolebias_marmoratus
ENSEBUG00000014515	ptcd1	93	39.572	ENSLBEG00000008061	ptcd1	83	38.889	Labrus_bergylta
ENSEBUG00000014515	ptcd1	97	42.609	ENSLACG00000011172	ptcd1	84	41.486	Latimeria_chalumnae
ENSEBUG00000014515	ptcd1	97	41.156	ENSLOCG00000004833	ptcd1	86	38.347	Lepisosteus_oculatus
ENSEBUG00000014515	ptcd1	97	40.440	ENSLAFG00000002588	-	89	38.617	Loxodonta_africana
ENSEBUG00000014515	ptcd1	99	40.992	ENSMFAG00000041324	-	90	40.456	Macaca_fascicularis
ENSEBUG00000014515	ptcd1	99	41.157	ENSMMUG00000030408	-	90	40.741	Macaca_mulatta
ENSEBUG00000014515	ptcd1	99	40.992	ENSMNEG00000043786	-	90	40.456	Macaca_nemestrina
ENSEBUG00000014515	ptcd1	99	56.164	ENSMLEG00000031179	-	70	56.164	Mandrillus_leucophaeus
ENSEBUG00000014515	ptcd1	93	37.975	ENSMAMG00000007623	ptcd1	82	38.030	Mastacembelus_armatus
ENSEBUG00000014515	ptcd1	94	40.143	ENSMZEG00005012722	ptcd1	80	40.317	Maylandia_zebra
ENSEBUG00000014515	ptcd1	74	58.247	ENSMGAG00000004211	-	56	57.143	Meleagris_gallopavo
ENSEBUG00000014515	ptcd1	97	40.314	ENSMICG00000017428	-	92	40.656	Microcebus_murinus
ENSEBUG00000014515	ptcd1	96	37.747	ENSMMOG00000020243	ptcd1	93	38.763	Mola_mola
ENSEBUG00000014515	ptcd1	99	41.681	ENSMODG00000001350	-	89	39.416	Monodelphis_domestica
ENSEBUG00000014515	ptcd1	98	36.553	ENSMALG00000018442	ptcd1	83	37.355	Monopterus_albus
ENSEBUG00000014515	ptcd1	96	42.032	MGP_CAROLIEiJ_G0028011	Ptcd1	90	40.616	Mus_caroli
ENSEBUG00000014515	ptcd1	96	41.885	ENSMUSG00000029624	Ptcd1	90	41.108	Mus_musculus
ENSEBUG00000014515	ptcd1	96	42.531	MGP_PahariEiJ_G0024580	Ptcd1	93	40.371	Mus_pahari
ENSEBUG00000014515	ptcd1	96	42.004	MGP_SPRETEiJ_G0029012	Ptcd1	90	40.962	Mus_spretus
ENSEBUG00000014515	ptcd1	96	42.531	ENSMPUG00000016518	-	84	42.656	Mustela_putorius_furo
ENSEBUG00000014515	ptcd1	96	41.207	ENSMLUG00000010994	-	79	41.231	Myotis_lucifugus
ENSEBUG00000014515	ptcd1	96	38.918	ENSNBRG00000010079	ptcd1	87	38.797	Neolamprologus_brichardi
ENSEBUG00000014515	ptcd1	99	42.295	ENSNLEG00000011060	-	93	42.061	Nomascus_leucogenys
ENSEBUG00000014515	ptcd1	97	41.391	ENSMEUG00000006930	-	87	40.491	Notamacropus_eugenii
ENSEBUG00000014515	ptcd1	84	72.340	ENSOPRG00000013647	-	64	72.340	Ochotona_princeps
ENSEBUG00000014515	ptcd1	94	37.814	ENSONIG00000003168	ptcd1	94	38.413	Oreochromis_niloticus
ENSEBUG00000014515	ptcd1	90	41.431	ENSOANG00000007728	-	74	41.176	Ornithorhynchus_anatinus
ENSEBUG00000014515	ptcd1	98	40.716	ENSOCUG00000010584	-	90	39.857	Oryctolagus_cuniculus
ENSEBUG00000014515	ptcd1	93	37.794	ENSORLG00000009275	ptcd1	84	38.690	Oryzias_latipes
ENSEBUG00000014515	ptcd1	93	37.343	ENSORLG00020000988	ptcd1	84	38.569	Oryzias_latipes_hni
ENSEBUG00000014515	ptcd1	93	37.702	ENSORLG00015010557	ptcd1	84	38.318	Oryzias_latipes_hsok
ENSEBUG00000014515	ptcd1	93	39.893	ENSOMEG00000020627	ptcd1	86	39.571	Oryzias_melastigma
ENSEBUG00000014515	ptcd1	98	42.341	ENSOGAG00000010877	-	90	41.282	Otolemur_garnettii
ENSEBUG00000014515	ptcd1	98	39.966	ENSOARG00000018676	-	92	38.559	Ovis_aries
ENSEBUG00000014515	ptcd1	99	41.983	ENSPPAG00000036024	-	90	41.026	Pan_paniscus
ENSEBUG00000014515	ptcd1	97	43.031	ENSPPRG00000003478	-	88	41.805	Panthera_pardus
ENSEBUG00000014515	ptcd1	99	41.653	ENSPTRG00000019452	-	90	40.883	Pan_troglodytes
ENSEBUG00000014515	ptcd1	99	40.992	ENSPANG00000016730	-	90	40.456	Papio_anubis
ENSEBUG00000014515	ptcd1	99	59.278	ENSPKIG00000014215	ptcd1	93	39.803	Paramormyrops_kingsleyae
ENSEBUG00000014515	ptcd1	96	53.642	ENSPSIG00000011184	-	89	47.967	Pelodiscus_sinensis
ENSEBUG00000014515	ptcd1	93	34.806	ENSPMAG00000009667	ptcd1	99	36.786	Petromyzon_marinus
ENSEBUG00000014515	ptcd1	99	42.393	ENSPCIG00000024778	-	88	40.466	Phascolarctos_cinereus
ENSEBUG00000014515	ptcd1	93	39.107	ENSPFOG00000004458	ptcd1	83	38.426	Poecilia_formosa
ENSEBUG00000014515	ptcd1	93	39.286	ENSPLAG00000011051	ptcd1	81	38.854	Poecilia_latipinna
ENSEBUG00000014515	ptcd1	93	39.535	ENSPMEG00000020547	ptcd1	83	38.949	Poecilia_mexicana
ENSEBUG00000014515	ptcd1	93	39.459	ENSPREG00000000059	ptcd1	81	39.713	Poecilia_reticulata
ENSEBUG00000014515	ptcd1	99	42.167	ENSPPYG00000017377	-	95	41.463	Pongo_abelii
ENSEBUG00000014515	ptcd1	84	72.340	ENSPCAG00000001852	-	70	72.340	Procavia_capensis
ENSEBUG00000014515	ptcd1	98	41.638	ENSPCOG00000018596	-	92	41.185	Propithecus_coquereli
ENSEBUG00000014515	ptcd1	94	39.606	ENSPNYG00000019993	ptcd1	80	39.841	Pundamilia_nyererei
ENSEBUG00000014515	ptcd1	98	40.311	ENSPNAG00000014931	ptcd1	91	38.981	Pygocentrus_nattereri
ENSEBUG00000014515	ptcd1	96	42.234	ENSRNOG00000000987	Ptcd1	91	41.029	Rattus_norvegicus
ENSEBUG00000014515	ptcd1	99	42.007	ENSRBIG00000043393	-	90	41.314	Rhinopithecus_bieti
ENSEBUG00000014515	ptcd1	99	42.517	ENSRROG00000036420	-	90	41.752	Rhinopithecus_roxellana
ENSEBUG00000014515	ptcd1	99	43.147	ENSSBOG00000024114	-	90	42.174	Saimiri_boliviensis_boliviensis
ENSEBUG00000014515	ptcd1	99	41.098	ENSSHAG00000011376	-	97	39.712	Sarcophilus_harrisii
ENSEBUG00000014515	ptcd1	99	41.397	ENSSFOG00015007909	ptcd1	88	40.490	Scleropages_formosus
ENSEBUG00000014515	ptcd1	93	36.775	ENSSMAG00000000218	ptcd1	90	37.420	Scophthalmus_maximus
ENSEBUG00000014515	ptcd1	93	37.655	ENSSDUG00000015671	ptcd1	82	37.893	Seriola_dumerili
ENSEBUG00000014515	ptcd1	93	38.587	ENSSLDG00000014261	ptcd1	82	38.400	Seriola_lalandi_dorsalis
ENSEBUG00000014515	ptcd1	97	39.100	ENSSPUG00000003540	-	84	38.889	Sphenodon_punctatus
ENSEBUG00000014515	ptcd1	93	37.950	ENSSPAG00000011049	ptcd1	84	37.744	Stegastes_partitus
ENSEBUG00000014515	ptcd1	97	42.683	ENSSSCG00000007622	-	96	39.913	Sus_scrofa
ENSEBUG00000014515	ptcd1	97	41.638	ENSTGUG00000007563	-	98	40.741	Taeniopygia_guttata
ENSEBUG00000014515	ptcd1	96	37.258	ENSTRUG00000013471	ptcd1	81	38.760	Takifugu_rubripes
ENSEBUG00000014515	ptcd1	96	37.786	ENSTNIG00000008271	ptcd1	79	38.776	Tetraodon_nigroviridis
ENSEBUG00000014515	ptcd1	99	41.077	ENSTBEG00000011021	-	88	41.168	Tupaia_belangeri
ENSEBUG00000014515	ptcd1	97	42.261	ENSTTRG00000003006	-	88	41.053	Tursiops_truncatus
ENSEBUG00000014515	ptcd1	73	59.794	ENSUAMG00000008049	-	84	41.033	Ursus_americanus
ENSEBUG00000014515	ptcd1	96	42.207	ENSVVUG00000008836	-	92	40.714	Vulpes_vulpes
ENSEBUG00000014515	ptcd1	96	40.989	ENSXETG00000009891	ptcd1	93	38.881	Xenopus_tropicalis
ENSEBUG00000014515	ptcd1	93	38.036	ENSXMAG00000015540	ptcd1	80	38.413	Xiphophorus_maculatus