EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000014794 (Gene tree)
Gene ID: -
Gene Symbol: rab5c (1 of many)
Alias: wu:fb98b08|wu:fi16g01
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 15783 bases
Position: chrFYBX02010293.1:5936221-5952003
Accession: ZDB-GENE-031118-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000024013	MMR_HSR1	PF01926.23	5.6e-05	1	1
ENSEBUP00000024002	MMR_HSR1	PF01926.23	0.0001	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000024578	-	2916	-	ENSEBUP00000024002	259 (aa)	-	-
ENSEBUT00000024602	-	2423	-	ENSEBUP00000024026	171 (aa)	-	-
ENSEBUT00000024589	-	2546	-	ENSEBUP00000024013	212 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000014794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000014794's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000014794	rab5c	87	42.162	ENSEBUG00000000963	-	88	46.154
ENSEBUG00000014794	rab5c	82	40.782	ENSEBUG00000009003	-	79	40.331
ENSEBUG00000014794	rab5c	77	37.349	ENSEBUG00000004971	-	76	37.349
ENSEBUG00000014794	rab5c	76	35.583	ENSEBUG00000003784	rhebl1	93	35.762
ENSEBUG00000014794	rab5c	56	30.952	ENSEBUG00000004741	arl4cb	58	30.952
ENSEBUG00000014794	rab5c	80	36.842	ENSEBUG00000006581	rab12	83	36.842
ENSEBUG00000014794	rab5c	57	30.233	ENSEBUG00000007051	-	63	30.233
ENSEBUG00000014794	rab5c	56	31.746	ENSEBUG00000005056	arl4aa	55	31.746
ENSEBUG00000014794	rab5c	90	30.693	ENSEBUG00000002259	RAB29	96	30.693
ENSEBUG00000014794	rab5c	77	46.012	ENSEBUG00000011775	rab11ba	77	45.342
ENSEBUG00000014794	rab5c	56	31.967	ENSEBUG00000009183	arl8ba	63	31.452
ENSEBUG00000014794	rab5c	83	52.000	ENSEBUG00000015845	-	81	53.371
ENSEBUG00000014794	rab5c	77	47.239	ENSEBUG00000015886	-	81	47.239
ENSEBUG00000014794	rab5c	80	31.461	ENSEBUG00000008934	rab36	68	31.461
ENSEBUG00000014794	rab5c	77	34.756	ENSEBUG00000010861	-	65	34.756
ENSEBUG00000014794	rab5c	83	30.899	ENSEBUG00000004670	hrasb	93	30.899
ENSEBUG00000014794	rab5c	90	35.678	ENSEBUG00000004967	rab9b	97	35.678
ENSEBUG00000014794	rab5c	97	44.878	ENSEBUG00000012680	-	83	44.878
ENSEBUG00000014794	rab5c	80	31.176	ENSEBUG00000015012	kras	89	31.176
ENSEBUG00000014794	rab5c	57	30.645	ENSEBUG00000010483	-	63	30.645
ENSEBUG00000014794	rab5c	72	35.065	ENSEBUG00000002306	rheb	83	35.065
ENSEBUG00000014794	rab5c	81	37.572	ENSEBUG00000003339	-	84	37.572
ENSEBUG00000014794	rab5c	90	42.157	ENSEBUG00000015447	-	94	42.157
ENSEBUG00000014794	rab5c	90	43.627	ENSEBUG00000007493	rab11a	94	43.627
ENSEBUG00000014794	rab5c	64	31.325	ENSEBUG00000011510	-	77	31.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000014794	rab5c	100	79.535	ENSG00000108774	RAB5C	100	90.110	Homo_sapiens
ENSEBUG00000014794	rab5c	88	86.022	ENSAPOG00000016864	rab5c	89	82.653	Acanthochromis_polyacanthus
ENSEBUG00000014794	rab5c	100	79.535	ENSAMEG00000006003	RAB5C	99	79.535	Ailuropoda_melanoleuca
ENSEBUG00000014794	rab5c	88	86.559	ENSACIG00000010896	rab5c	85	86.559	Amphilophus_citrinellus
ENSEBUG00000014794	rab5c	88	86.022	ENSAOCG00000016614	rab5c	98	77.315	Amphiprion_ocellaris
ENSEBUG00000014794	rab5c	85	86.740	ENSAPEG00000017868	-	97	77.725	Amphiprion_percula
ENSEBUG00000014794	rab5c	88	86.559	ENSATEG00000001937	rab5c	85	86.559	Anabas_testudineus
ENSEBUG00000014794	rab5c	92	84.184	ENSANAG00000025390	RAB5C	96	84.184	Aotus_nancymaae
ENSEBUG00000014794	rab5c	88	86.559	ENSACLG00000002706	rab5c	89	83.163	Astatotilapia_calliptera
ENSEBUG00000014794	rab5c	96	77.512	ENSACLG00000008615	-	96	76.995	Astatotilapia_calliptera
ENSEBUG00000014794	rab5c	84	87.640	ENSAMXG00000037267	-	99	77.885	Astyanax_mexicanus
ENSEBUG00000014794	rab5c	88	86.631	ENSAMXG00000043717	rab5c	98	77.880	Astyanax_mexicanus
ENSEBUG00000014794	rab5c	100	80.000	ENSBTAG00000006982	RAB5C	99	80.000	Bos_taurus
ENSEBUG00000014794	rab5c	97	75.728	WBGene00004268	rab-5	97	75.728	Caenorhabditis_elegans
ENSEBUG00000014794	rab5c	100	79.070	ENSCAFG00000015629	RAB5C	99	79.070	Canis_familiaris
ENSEBUG00000014794	rab5c	100	79.070	ENSCAFG00020013537	RAB5C	99	79.070	Canis_lupus_dingo
ENSEBUG00000014794	rab5c	100	80.000	ENSCHIG00000012960	RAB5C	99	80.000	Capra_hircus
ENSEBUG00000014794	rab5c	100	79.535	ENSTSYG00000030531	RAB5C	99	79.535	Carlito_syrichta
ENSEBUG00000014794	rab5c	100	79.070	ENSCCAG00000025940	RAB5C	99	79.070	Cebus_capucinus
ENSEBUG00000014794	rab5c	100	79.535	ENSCATG00000040873	RAB5C	99	79.535	Cercocebus_atys
ENSEBUG00000014794	rab5c	100	79.535	ENSCLAG00000016650	RAB5C	99	79.535	Chinchilla_lanigera
ENSEBUG00000014794	rab5c	84	86.517	ENSCHOG00000009886	RAB5C	100	86.517	Choloepus_hoffmanni
ENSEBUG00000014794	rab5c	99	75.234	ENSCING00000003340	-	99	75.234	Ciona_intestinalis
ENSEBUG00000014794	rab5c	99	72.727	ENSCSAVG00000000613	-	99	80.864	Ciona_savignyi
ENSEBUG00000014794	rab5c	100	79.535	ENSCGRG00001014226	Rab5c	99	79.535	Cricetulus_griseus_chok1gshd
ENSEBUG00000014794	rab5c	100	79.535	ENSCGRG00000007534	Rab5c	99	79.535	Cricetulus_griseus_crigri
ENSEBUG00000014794	rab5c	99	78.704	ENSCSEG00000017024	rab5c	98	78.704	Cynoglossus_semilaevis
ENSEBUG00000014794	rab5c	88	86.022	ENSCVAG00000009550	rab5c	98	77.778	Cyprinodon_variegatus
ENSEBUG00000014794	rab5c	100	79.070	ENSDNOG00000038853	RAB5C	99	79.070	Dasypus_novemcinctus
ENSEBUG00000014794	rab5c	100	79.070	ENSDORG00000006819	Rab5c	99	79.070	Dipodomys_ordii
ENSEBUG00000014794	rab5c	98	76.555	FBgn0014010	Rab5	94	76.555	Drosophila_melanogaster
ENSEBUG00000014794	rab5c	100	79.535	ENSEASG00005009281	RAB5C	99	79.535	Equus_asinus_asinus
ENSEBUG00000014794	rab5c	100	79.535	ENSECAG00000025054	RAB5C	99	79.535	Equus_caballus
ENSEBUG00000014794	rab5c	100	79.070	ENSEEUG00000002790	RAB5C	99	79.070	Erinaceus_europaeus
ENSEBUG00000014794	rab5c	88	86.022	ENSELUG00000018516	rab5c	86	86.022	Esox_lucius
ENSEBUG00000014794	rab5c	88	86.022	ENSELUG00000010439	-	85	86.022	Esox_lucius
ENSEBUG00000014794	rab5c	100	80.000	ENSFCAG00000002148	RAB5C	99	80.000	Felis_catus
ENSEBUG00000014794	rab5c	100	78.605	ENSFDAG00000021541	RAB5C	99	78.605	Fukomys_damarensis
ENSEBUG00000014794	rab5c	91	82.812	ENSFHEG00000015268	-	87	82.812	Fundulus_heteroclitus
ENSEBUG00000014794	rab5c	88	86.022	ENSFHEG00000012117	rab5c	98	77.778	Fundulus_heteroclitus
ENSEBUG00000014794	rab5c	88	84.409	ENSGMOG00000015096	rab5c	89	81.122	Gadus_morhua
ENSEBUG00000014794	rab5c	80	82.840	ENSGMOG00000001876	-	98	82.840	Gadus_morhua
ENSEBUG00000014794	rab5c	88	86.559	ENSGAFG00000000884	rab5c	99	77.880	Gambusia_affinis
ENSEBUG00000014794	rab5c	91	82.292	ENSGAFG00000003642	-	88	81.218	Gambusia_affinis
ENSEBUG00000014794	rab5c	88	84.946	ENSGACG00000008659	rab5c	85	84.946	Gasterosteus_aculeatus
ENSEBUG00000014794	rab5c	100	79.535	ENSGGOG00000005472	RAB5C	99	79.535	Gorilla_gorilla
ENSEBUG00000014794	rab5c	96	77.512	ENSHBUG00000006823	-	96	76.995	Haplochromis_burtoni
ENSEBUG00000014794	rab5c	88	86.559	ENSHBUG00000002014	rab5c	89	83.163	Haplochromis_burtoni
ENSEBUG00000014794	rab5c	100	77.674	ENSHGLG00000012067	RAB5C	99	77.674	Heterocephalus_glaber_female
ENSEBUG00000014794	rab5c	96	75.962	ENSHCOG00000020238	-	96	75.829	Hippocampus_comes
ENSEBUG00000014794	rab5c	88	86.631	ENSHCOG00000004662	rab5c	83	86.631	Hippocampus_comes
ENSEBUG00000014794	rab5c	87	83.243	ENSIPUG00000020082	rab5c	89	81.818	Ictalurus_punctatus
ENSEBUG00000014794	rab5c	100	79.070	ENSSTOG00000006620	RAB5C	99	79.070	Ictidomys_tridecemlineatus
ENSEBUG00000014794	rab5c	100	79.535	ENSJJAG00000021181	Rab5c	99	79.535	Jaculus_jaculus
ENSEBUG00000014794	rab5c	88	85.484	ENSKMAG00000020038	rab5c	85	85.484	Kryptolebias_marmoratus
ENSEBUG00000014794	rab5c	91	82.292	ENSKMAG00000017417	-	87	82.292	Kryptolebias_marmoratus
ENSEBUG00000014794	rab5c	88	86.559	ENSLBEG00000004128	rab5c	85	86.559	Labrus_bergylta
ENSEBUG00000014794	rab5c	86	86.813	ENSLBEG00000010408	-	96	75.943	Labrus_bergylta
ENSEBUG00000014794	rab5c	99	76.636	ENSLOCG00000012566	rab5c	100	76.636	Lepisosteus_oculatus
ENSEBUG00000014794	rab5c	100	79.535	ENSMFAG00000039627	RAB5C	99	79.535	Macaca_fascicularis
ENSEBUG00000014794	rab5c	100	79.535	ENSMNEG00000000355	RAB5C	99	79.535	Macaca_nemestrina
ENSEBUG00000014794	rab5c	88	86.559	ENSMAMG00000022322	rab5c	85	86.559	Mastacembelus_armatus
ENSEBUG00000014794	rab5c	86	86.813	ENSMAMG00000016207	-	83	86.813	Mastacembelus_armatus
ENSEBUG00000014794	rab5c	96	77.512	ENSMZEG00005021090	-	96	76.995	Maylandia_zebra
ENSEBUG00000014794	rab5c	88	86.559	ENSMZEG00005022735	rab5c	89	83.163	Maylandia_zebra
ENSEBUG00000014794	rab5c	100	79.535	ENSMAUG00000015005	Rab5c	99	79.535	Mesocricetus_auratus
ENSEBUG00000014794	rab5c	100	79.070	ENSMICG00000041608	RAB5C	99	79.070	Microcebus_murinus
ENSEBUG00000014794	rab5c	100	79.070	ENSMOCG00000018531	-	99	79.070	Microtus_ochrogaster
ENSEBUG00000014794	rab5c	99	77.778	ENSMMOG00000020621	rab5c	98	77.778	Mola_mola
ENSEBUG00000014794	rab5c	88	81.183	ENSMALG00000006052	rab5c	84	81.183	Monopterus_albus
ENSEBUG00000014794	rab5c	100	75.688	ENSMALG00000022348	-	99	75.688	Monopterus_albus
ENSEBUG00000014794	rab5c	100	79.535	MGP_CAROLIEiJ_G0017184	Rab5c	99	79.535	Mus_caroli
ENSEBUG00000014794	rab5c	100	79.535	ENSMUSG00000019173	Rab5c	99	79.535	Mus_musculus
ENSEBUG00000014794	rab5c	100	79.535	MGP_PahariEiJ_G0018314	Rab5c	99	79.535	Mus_pahari
ENSEBUG00000014794	rab5c	100	79.535	MGP_SPRETEiJ_G0018027	Rab5c	99	79.535	Mus_spretus
ENSEBUG00000014794	rab5c	100	79.535	ENSMPUG00000010554	RAB5C	99	79.535	Mustela_putorius_furo
ENSEBUG00000014794	rab5c	100	78.605	ENSNGAG00000010286	Rab5c	99	78.605	Nannospalax_galili
ENSEBUG00000014794	rab5c	96	77.512	ENSNBRG00000016922	-	96	76.995	Neolamprologus_brichardi
ENSEBUG00000014794	rab5c	88	86.559	ENSNBRG00000018165	rab5c	89	83.163	Neolamprologus_brichardi
ENSEBUG00000014794	rab5c	84	80.899	ENSOPRG00000008255	RAB5C	100	80.899	Ochotona_princeps
ENSEBUG00000014794	rab5c	100	79.535	ENSODEG00000017920	RAB5C	99	79.535	Octodon_degus
ENSEBUG00000014794	rab5c	88	86.559	ENSONIG00000001113	rab5c	89	83.163	Oreochromis_niloticus
ENSEBUG00000014794	rab5c	88	85.484	ENSORLG00000003882	rab5c	85	85.484	Oryzias_latipes
ENSEBUG00000014794	rab5c	88	85.484	ENSORLG00020008388	rab5c	85	85.484	Oryzias_latipes_hni
ENSEBUG00000014794	rab5c	88	85.484	ENSORLG00015021900	rab5c	85	85.484	Oryzias_latipes_hsok
ENSEBUG00000014794	rab5c	88	85.484	ENSOMEG00000023078	rab5c	85	85.484	Oryzias_melastigma
ENSEBUG00000014794	rab5c	100	79.535	ENSOGAG00000009456	RAB5C	99	79.535	Otolemur_garnettii
ENSEBUG00000014794	rab5c	100	80.000	ENSOARG00000018768	RAB5C	99	80.000	Ovis_aries
ENSEBUG00000014794	rab5c	100	79.535	ENSPPAG00000037206	RAB5C	99	79.535	Pan_paniscus
ENSEBUG00000014794	rab5c	100	80.000	ENSPPRG00000005745	RAB5C	99	80.000	Panthera_pardus
ENSEBUG00000014794	rab5c	100	80.000	ENSPTIG00000008177	RAB5C	99	80.000	Panthera_tigris_altaica
ENSEBUG00000014794	rab5c	100	79.535	ENSPTRG00000009194	RAB5C	99	79.535	Pan_troglodytes
ENSEBUG00000014794	rab5c	88	85.484	ENSPKIG00000001237	-	86	85.484	Paramormyrops_kingsleyae
ENSEBUG00000014794	rab5c	99	77.315	ENSPKIG00000020112	-	99	77.315	Paramormyrops_kingsleyae
ENSEBUG00000014794	rab5c	88	86.559	ENSPMGG00000010792	rab5c	85	86.559	Periophthalmus_magnuspinnatus
ENSEBUG00000014794	rab5c	100	79.070	ENSPEMG00000017971	Rab5c	99	79.070	Peromyscus_maniculatus_bairdii
ENSEBUG00000014794	rab5c	100	75.342	ENSPMAG00000000008	rab5c	100	75.342	Petromyzon_marinus
ENSEBUG00000014794	rab5c	100	81.604	ENSPMAG00000007867	rab5c	100	81.604	Petromyzon_marinus
ENSEBUG00000014794	rab5c	99	84.834	ENSPMAG00000001399	rab5c	99	84.834	Petromyzon_marinus
ENSEBUG00000014794	rab5c	100	78.802	ENSPCIG00000020225	-	99	78.802	Phascolarctos_cinereus
ENSEBUG00000014794	rab5c	98	78.095	ENSPLAG00000016333	-	96	78.095	Poecilia_latipinna
ENSEBUG00000014794	rab5c	88	86.559	ENSPLAG00000004790	rab5c	99	77.880	Poecilia_latipinna
ENSEBUG00000014794	rab5c	86	86.813	ENSPMEG00000012614	-	88	81.726	Poecilia_mexicana
ENSEBUG00000014794	rab5c	88	86.559	ENSPMEG00000011336	rab5c	99	77.880	Poecilia_mexicana
ENSEBUG00000014794	rab5c	88	86.559	ENSPREG00000010146	rab5c	99	77.880	Poecilia_reticulata
ENSEBUG00000014794	rab5c	86	85.246	ENSPREG00000022167	-	92	83.069	Poecilia_reticulata
ENSEBUG00000014794	rab5c	100	79.535	ENSPPYG00000008398	RAB5C	99	79.535	Pongo_abelii
ENSEBUG00000014794	rab5c	100	78.605	ENSPCAG00000016412	RAB5C	99	78.605	Procavia_capensis
ENSEBUG00000014794	rab5c	100	78.605	ENSPCOG00000026327	RAB5C	99	78.605	Propithecus_coquereli
ENSEBUG00000014794	rab5c	100	79.535	ENSPVAG00000003867	RAB5C	99	79.535	Pteropus_vampyrus
ENSEBUG00000014794	rab5c	88	86.559	ENSPNYG00000010615	rab5c	89	83.163	Pundamilia_nyererei
ENSEBUG00000014794	rab5c	96	77.512	ENSPNYG00000015851	-	96	76.995	Pundamilia_nyererei
ENSEBUG00000014794	rab5c	84	87.079	ENSPNAG00000002218	-	88	83.511	Pygocentrus_nattereri
ENSEBUG00000014794	rab5c	99	77.880	ENSPNAG00000028138	rab5c	98	77.880	Pygocentrus_nattereri
ENSEBUG00000014794	rab5c	100	79.535	ENSRNOG00000018568	Rab5c	99	79.535	Rattus_norvegicus
ENSEBUG00000014794	rab5c	100	79.535	ENSRBIG00000031376	RAB5C	99	79.535	Rhinopithecus_bieti
ENSEBUG00000014794	rab5c	100	79.535	ENSRROG00000032895	RAB5C	99	79.535	Rhinopithecus_roxellana
ENSEBUG00000014794	rab5c	100	79.070	ENSSBOG00000032552	-	99	79.070	Saimiri_boliviensis_boliviensis
ENSEBUG00000014794	rab5c	100	79.263	ENSSHAG00000005267	-	99	79.263	Sarcophilus_harrisii
ENSEBUG00000014794	rab5c	88	84.409	ENSSFOG00015009988	-	85	84.409	Scleropages_formosus
ENSEBUG00000014794	rab5c	88	87.097	ENSSMAG00000007323	rab5c	98	78.241	Scophthalmus_maximus
ENSEBUG00000014794	rab5c	99	77.778	ENSSDUG00000023008	rab5c	98	77.778	Seriola_dumerili
ENSEBUG00000014794	rab5c	99	77.315	ENSSLDG00000017771	rab5c	98	77.315	Seriola_lalandi_dorsalis
ENSEBUG00000014794	rab5c	100	78.899	ENSSPUG00000012950	-	99	78.899	Sphenodon_punctatus
ENSEBUG00000014794	rab5c	88	86.559	ENSSPAG00000006436	rab5c	89	83.163	Stegastes_partitus
ENSEBUG00000014794	rab5c	100	80.000	ENSSSCG00000032467	RAB5C	99	80.000	Sus_scrofa
ENSEBUG00000014794	rab5c	88	86.022	ENSTRUG00000015590	rab5c	85	86.022	Takifugu_rubripes
ENSEBUG00000014794	rab5c	89	84.043	ENSTNIG00000011711	rab5c	85	84.043	Tetraodon_nigroviridis
ENSEBUG00000014794	rab5c	100	79.535	ENSTBEG00000007092	RAB5C	99	79.535	Tupaia_belangeri
ENSEBUG00000014794	rab5c	100	80.000	ENSTTRG00000006673	RAB5C	99	80.000	Tursiops_truncatus
ENSEBUG00000014794	rab5c	100	79.535	ENSUAMG00000024343	RAB5C	99	79.535	Ursus_americanus
ENSEBUG00000014794	rab5c	100	79.535	ENSUMAG00000023270	RAB5C	99	79.535	Ursus_maritimus
ENSEBUG00000014794	rab5c	88	86.559	ENSXCOG00000016788	rab5c	99	77.419	Xiphophorus_couchianus
ENSEBUG00000014794	rab5c	91	82.292	ENSXCOG00000006300	-	88	81.218	Xiphophorus_couchianus
ENSEBUG00000014794	rab5c	88	86.559	ENSXMAG00000003266	rab5c	99	77.880	Xiphophorus_maculatus
ENSEBUG00000014794	rab5c	98	77.725	ENSXMAG00000022179	-	97	77.725	Xiphophorus_maculatus