EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000015949 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 76324 bases
Position: chrFYBX02010628.1:2411414-2487737
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000025894	DND1_DSRM	PF14709.7	2.1e-09	1	1
ENSEBUP00000025882	DND1_DSRM	PF14709.7	2.4e-09	1	1
ENSEBUP00000025882	RRM_1	PF00076.22	6.2e-29	1	2
ENSEBUP00000025882	RRM_1	PF00076.22	6.2e-29	2	2
ENSEBUP00000025894	RRM_1	PF00076.22	7.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000026470	-	2055	-	ENSEBUP00000025894	466 (aa)	-	-
ENSEBUT00000026458	-	2721	-	ENSEBUP00000025882	504 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000015949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000015949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000015949	-	75	63.492	ENSEBUG00000016408	-	89	63.492
ENSEBUG00000015949	-	59	54.636	ENSEBUG00000008428	plrg1	55	54.636
ENSEBUG00000015949	-	59	56.000	ENSEBUG00000011912	rbm47	54	56.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000015949	-	59	53.667	ENSCING00000004101	-	51	53.667	Ciona_intestinalis
ENSEBUG00000015949	-	91	39.104	ENSCSAVG00000009923	-	94	39.104	Ciona_savignyi
ENSEBUG00000015949	-	92	38.654	ENSCSAVG00000000326	-	92	38.846	Ciona_savignyi
ENSEBUG00000015949	-	59	52.805	ENSPMAG00000008818	-	100	52.805	Petromyzon_marinus