EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000016136 (Gene tree)
Gene ID: -
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 172769 bases
Position: chrFYBX02009720.1:493081-665849
Accession: ZDB-GENE-040426-2874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000026269	XRN_N	PF03159.18	6.2e-102	1	1
ENSEBUP00000026309	XRN_N	PF03159.18	7e-93	1	1
ENSEBUP00000026226	XRN_N	PF03159.18	8.2e-93	1	1
ENSEBUP00000026194	XRN_N	PF03159.18	8.3e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000026885	-	3107	-	ENSEBUP00000026309	801 (aa)	-	-
ENSEBUT00000026802	-	2840	-	ENSEBUP00000026226	783 (aa)	-	-
ENSEBUT00000026770	-	2885	-	ENSEBUP00000026194	798 (aa)	-	-
ENSEBUT00000026845	-	2634	-	ENSEBUP00000026269	821 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000016136's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000016136's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000016136	xrn2	100	71.636	ENSG00000088930	XRN2	84	71.636	Homo_sapiens
ENSEBUG00000016136	xrn2	100	68.856	ENSAPOG00000009818	xrn2	83	68.856	Acanthochromis_polyacanthus
ENSEBUG00000016136	xrn2	100	71.394	ENSAMEG00000012581	XRN2	84	71.394	Ailuropoda_melanoleuca
ENSEBUG00000016136	xrn2	100	67.233	ENSACIG00000015047	xrn2	95	70.467	Amphilophus_citrinellus
ENSEBUG00000016136	xrn2	100	68.978	ENSAOCG00000023632	xrn2	83	68.978	Amphiprion_ocellaris
ENSEBUG00000016136	xrn2	100	68.856	ENSAPEG00000014871	xrn2	83	68.856	Amphiprion_percula
ENSEBUG00000016136	xrn2	100	68.978	ENSATEG00000001273	xrn2	85	68.978	Anabas_testudineus
ENSEBUG00000016136	xrn2	99	71.410	ENSAPLG00000013869	XRN2	84	71.410	Anas_platyrhynchos
ENSEBUG00000016136	xrn2	99	70.775	ENSACAG00000005565	XRN2	84	68.319	Anolis_carolinensis
ENSEBUG00000016136	xrn2	100	71.515	ENSANAG00000020126	XRN2	84	71.515	Aotus_nancymaae
ENSEBUG00000016136	xrn2	100	67.883	ENSACLG00000010522	xrn2	77	96.000	Astatotilapia_calliptera
ENSEBUG00000016136	xrn2	100	71.046	ENSAMXG00000018301	xrn2	84	71.046	Astyanax_mexicanus
ENSEBUG00000016136	xrn2	100	71.515	ENSBTAG00000011304	XRN2	84	71.515	Bos_taurus
ENSEBUG00000016136	xrn2	100	54.299	WBGene00006964	xrn-2	85	54.181	Caenorhabditis_elegans
ENSEBUG00000016136	xrn2	100	71.636	ENSCJAG00000005611	XRN2	84	71.636	Callithrix_jacchus
ENSEBUG00000016136	xrn2	100	72.046	ENSCAFG00000005185	XRN2	84	71.515	Canis_familiaris
ENSEBUG00000016136	xrn2	100	71.515	ENSCAFG00020027479	XRN2	84	71.515	Canis_lupus_dingo
ENSEBUG00000016136	xrn2	100	71.879	ENSCHIG00000006921	XRN2	84	71.879	Capra_hircus
ENSEBUG00000016136	xrn2	100	71.845	ENSTSYG00000008315	XRN2	84	71.845	Carlito_syrichta
ENSEBUG00000016136	xrn2	99	60.334	ENSCAPG00000010773	XRN2	81	61.104	Cavia_aperea
ENSEBUG00000016136	xrn2	100	71.879	ENSCPOG00000009407	XRN2	84	71.879	Cavia_porcellus
ENSEBUG00000016136	xrn2	100	71.515	ENSCATG00000040350	XRN2	85	71.515	Cercocebus_atys
ENSEBUG00000016136	xrn2	100	71.515	ENSCLAG00000013419	XRN2	84	71.515	Chinchilla_lanigera
ENSEBUG00000016136	xrn2	100	71.515	ENSCSAG00000011094	XRN2	84	71.515	Chlorocebus_sabaeus
ENSEBUG00000016136	xrn2	73	87.097	ENSCHOG00000013404	XRN2	61	87.097	Choloepus_hoffmanni
ENSEBUG00000016136	xrn2	99	71.883	ENSCPBG00000023533	XRN2	84	71.065	Chrysemys_picta_bellii
ENSEBUG00000016136	xrn2	100	59.140	ENSCING00000022336	-	98	59.259	Ciona_intestinalis
ENSEBUG00000016136	xrn2	100	56.731	ENSCSAVG00000011217	-	100	58.011	Ciona_savignyi
ENSEBUG00000016136	xrn2	100	71.515	ENSCANG00000040240	XRN2	84	71.515	Colobus_angolensis_palliatus
ENSEBUG00000016136	xrn2	100	71.186	ENSCGRG00001010676	Xrn2	86	71.429	Cricetulus_griseus_chok1gshd
ENSEBUG00000016136	xrn2	99	71.574	ENSCGRG00000006378	Xrn2	84	71.574	Cricetulus_griseus_crigri
ENSEBUG00000016136	xrn2	64	66.667	ENSCSEG00000005628	xrn2	100	66.919	Cynoglossus_semilaevis
ENSEBUG00000016136	xrn2	100	66.909	ENSCVAG00000018999	xrn2	98	72.881	Cyprinodon_variegatus
ENSEBUG00000016136	xrn2	100	71.864	ENSDARG00000101900	xrn2	96	74.765	Danio_rerio
ENSEBUG00000016136	xrn2	100	71.758	ENSDNOG00000001895	XRN2	84	71.758	Dasypus_novemcinctus
ENSEBUG00000016136	xrn2	100	70.909	ENSDORG00000005434	Xrn2	84	70.909	Dipodomys_ordii
ENSEBUG00000016136	xrn2	100	56.189	FBgn0031868	Rat1	85	56.432	Drosophila_melanogaster
ENSEBUG00000016136	xrn2	90	80.049	ENSETEG00000001740	XRN2	78	80.049	Echinops_telfairi
ENSEBUG00000016136	xrn2	100	71.273	ENSEASG00005002484	XRN2	84	71.273	Equus_asinus_asinus
ENSEBUG00000016136	xrn2	91	92.000	ENSECAG00000018988	XRN2	80	92.000	Equus_caballus
ENSEBUG00000016136	xrn2	80	92.000	ENSEEUG00000009265	XRN2	67	92.000	Erinaceus_europaeus
ENSEBUG00000016136	xrn2	100	70.146	ENSELUG00000000552	xrn2	83	70.146	Esox_lucius
ENSEBUG00000016136	xrn2	100	71.515	ENSFCAG00000007970	XRN2	84	71.515	Felis_catus
ENSEBUG00000016136	xrn2	100	70.581	ENSFALG00000004508	XRN2	84	70.581	Ficedula_albicollis
ENSEBUG00000016136	xrn2	100	71.515	ENSFDAG00000016311	XRN2	84	71.515	Fukomys_damarensis
ENSEBUG00000016136	xrn2	64	66.917	ENSFHEG00000013039	xrn2	98	66.917	Fundulus_heteroclitus
ENSEBUG00000016136	xrn2	100	67.394	ENSGMOG00000013436	xrn2	98	67.394	Gadus_morhua
ENSEBUG00000016136	xrn2	100	70.944	ENSGALG00000008372	XRN2	84	70.944	Gallus_gallus
ENSEBUG00000016136	xrn2	100	69.016	ENSGAFG00000014284	xrn2	94	75.238	Gambusia_affinis
ENSEBUG00000016136	xrn2	100	66.950	ENSGACG00000011870	xrn2	96	72.159	Gasterosteus_aculeatus
ENSEBUG00000016136	xrn2	99	72.173	ENSGAGG00000004884	XRN2	84	71.308	Gopherus_agassizii
ENSEBUG00000016136	xrn2	100	71.515	ENSGGOG00000013738	XRN2	84	71.515	Gorilla_gorilla
ENSEBUG00000016136	xrn2	67	67.145	ENSHBUG00000005077	xrn2	77	96.000	Haplochromis_burtoni
ENSEBUG00000016136	xrn2	100	70.788	ENSHGLG00000014831	XRN2	84	70.788	Heterocephalus_glaber_female
ENSEBUG00000016136	xrn2	100	70.788	ENSHGLG00100013130	XRN2	84	70.788	Heterocephalus_glaber_male
ENSEBUG00000016136	xrn2	100	69.137	ENSHCOG00000011994	xrn2	88	66.667	Hippocampus_comes
ENSEBUG00000016136	xrn2	100	71.290	ENSIPUG00000006639	xrn2	84	71.290	Ictalurus_punctatus
ENSEBUG00000016136	xrn2	100	71.394	ENSSTOG00000000589	XRN2	84	71.394	Ictidomys_tridecemlineatus
ENSEBUG00000016136	xrn2	100	71.515	ENSJJAG00000022128	Xrn2	84	71.515	Jaculus_jaculus
ENSEBUG00000016136	xrn2	64	70.998	ENSLBEG00000010041	xrn2	78	93.590	Labrus_bergylta
ENSEBUG00000016136	xrn2	100	70.849	ENSLACG00000008307	XRN2	95	71.283	Latimeria_chalumnae
ENSEBUG00000016136	xrn2	100	68.735	ENSLOCG00000016874	xrn2	89	70.443	Lepisosteus_oculatus
ENSEBUG00000016136	xrn2	100	71.394	ENSLAFG00000014624	XRN2	84	71.394	Loxodonta_africana
ENSEBUG00000016136	xrn2	100	71.515	ENSMFAG00000038122	XRN2	84	71.515	Macaca_fascicularis
ENSEBUG00000016136	xrn2	100	71.515	ENSMMUG00000011405	XRN2	84	71.515	Macaca_mulatta
ENSEBUG00000016136	xrn2	100	71.515	ENSMNEG00000040626	XRN2	84	71.515	Macaca_nemestrina
ENSEBUG00000016136	xrn2	100	71.394	ENSMLEG00000041897	XRN2	84	71.394	Mandrillus_leucophaeus
ENSEBUG00000016136	xrn2	100	69.212	ENSMAMG00000008633	xrn2	84	69.212	Mastacembelus_armatus
ENSEBUG00000016136	xrn2	100	69.343	ENSMZEG00005022362	xrn2	99	67.450	Maylandia_zebra
ENSEBUG00000016136	xrn2	99	71.574	ENSMGAG00000003196	XRN2	84	70.361	Meleagris_gallopavo
ENSEBUG00000016136	xrn2	100	71.671	ENSMAUG00000021842	Xrn2	84	71.671	Mesocricetus_auratus
ENSEBUG00000016136	xrn2	100	70.894	ENSMICG00000008126	XRN2	84	70.894	Microcebus_murinus
ENSEBUG00000016136	xrn2	100	71.135	ENSMOCG00000012588	Xrn2	84	71.256	Microtus_ochrogaster
ENSEBUG00000016136	xrn2	100	69.586	ENSMMOG00000017576	xrn2	96	69.737	Mola_mola
ENSEBUG00000016136	xrn2	100	71.152	ENSMODG00000006163	XRN2	85	71.152	Monodelphis_domestica
ENSEBUG00000016136	xrn2	100	69.502	ENSMALG00000011355	xrn2	95	73.019	Monopterus_albus
ENSEBUG00000016136	xrn2	100	71.618	MGP_CAROLIEiJ_G0024400	Xrn2	84	71.618	Mus_caroli
ENSEBUG00000016136	xrn2	100	71.739	ENSMUSG00000027433	Xrn2	84	71.739	Mus_musculus
ENSEBUG00000016136	xrn2	100	71.618	MGP_PahariEiJ_G0025843	Xrn2	84	71.618	Mus_pahari
ENSEBUG00000016136	xrn2	100	71.739	MGP_SPRETEiJ_G0025318	Xrn2	94	79.832	Mus_spretus
ENSEBUG00000016136	xrn2	100	70.071	ENSMPUG00000001198	XRN2	79	70.071	Mustela_putorius_furo
ENSEBUG00000016136	xrn2	100	71.671	ENSMLUG00000001536	XRN2	84	71.671	Myotis_lucifugus
ENSEBUG00000016136	xrn2	100	71.879	ENSNGAG00000018138	Xrn2	84	71.879	Nannospalax_galili
ENSEBUG00000016136	xrn2	100	69.465	ENSNBRG00000008062	xrn2	77	96.000	Neolamprologus_brichardi
ENSEBUG00000016136	xrn2	100	71.515	ENSNLEG00000009991	XRN2	84	71.515	Nomascus_leucogenys
ENSEBUG00000016136	xrn2	61	71.111	ENSMEUG00000008622	-	51	71.111	Notamacropus_eugenii
ENSEBUG00000016136	xrn2	67	69.634	ENSOPRG00000001397	-	55	69.634	Ochotona_princeps
ENSEBUG00000016136	xrn2	99	66.539	ENSODEG00000000860	-	85	65.389	Octodon_degus
ENSEBUG00000016136	xrn2	100	71.394	ENSODEG00000010745	-	84	71.394	Octodon_degus
ENSEBUG00000016136	xrn2	100	68.932	ENSONIG00000018720	xrn2	83	68.204	Oreochromis_niloticus
ENSEBUG00000016136	xrn2	100	71.030	ENSOANG00000015673	XRN2	84	71.030	Ornithorhynchus_anatinus
ENSEBUG00000016136	xrn2	100	71.636	ENSOCUG00000013468	XRN2	84	71.636	Oryctolagus_cuniculus
ENSEBUG00000016136	xrn2	100	69.417	ENSORLG00000017213	xrn2	91	69.417	Oryzias_latipes
ENSEBUG00000016136	xrn2	100	69.417	ENSORLG00020001824	xrn2	84	69.417	Oryzias_latipes_hni
ENSEBUG00000016136	xrn2	100	69.296	ENSORLG00015019747	xrn2	84	69.296	Oryzias_latipes_hsok
ENSEBUG00000016136	xrn2	100	68.932	ENSOMEG00000019820	xrn2	83	69.175	Oryzias_melastigma
ENSEBUG00000016136	xrn2	100	71.273	ENSOGAG00000001068	XRN2	84	71.273	Otolemur_garnettii
ENSEBUG00000016136	xrn2	99	72.611	ENSOARG00000004443	XRN2	84	72.611	Ovis_aries
ENSEBUG00000016136	xrn2	100	71.515	ENSPPAG00000033549	XRN2	84	71.515	Pan_paniscus
ENSEBUG00000016136	xrn2	100	71.515	ENSPPRG00000008732	XRN2	84	71.515	Panthera_pardus
ENSEBUG00000016136	xrn2	99	72.229	ENSPTIG00000015683	XRN2	82	72.229	Panthera_tigris_altaica
ENSEBUG00000016136	xrn2	100	71.515	ENSPTRG00000013308	XRN2	84	71.515	Pan_troglodytes
ENSEBUG00000016136	xrn2	100	71.515	ENSPANG00000018088	XRN2	84	71.515	Papio_anubis
ENSEBUG00000016136	xrn2	100	70.717	ENSPKIG00000016889	xrn2	84	70.717	Paramormyrops_kingsleyae
ENSEBUG00000016136	xrn2	96	71.466	ENSPSIG00000014666	XRN2	98	71.466	Pelodiscus_sinensis
ENSEBUG00000016136	xrn2	100	70.773	ENSPEMG00000000111	Xrn2	84	70.773	Peromyscus_maniculatus_bairdii
ENSEBUG00000016136	xrn2	100	69.137	ENSPFOG00000004182	xrn2	84	69.137	Poecilia_formosa
ENSEBUG00000016136	xrn2	100	69.380	ENSPLAG00000007351	xrn2	91	69.380	Poecilia_latipinna
ENSEBUG00000016136	xrn2	96	68.182	ENSPMEG00000011798	xrn2	83	68.182	Poecilia_mexicana
ENSEBUG00000016136	xrn2	100	69.100	ENSPREG00000012452	xrn2	91	69.100	Poecilia_reticulata
ENSEBUG00000016136	xrn2	100	71.394	ENSPPYG00000010755	XRN2	84	71.394	Pongo_abelii
ENSEBUG00000016136	xrn2	100	67.152	ENSPCAG00000011191	XRN2	84	67.152	Procavia_capensis
ENSEBUG00000016136	xrn2	100	65.338	ENSPCOG00000016468	XRN2	83	65.338	Propithecus_coquereli
ENSEBUG00000016136	xrn2	91	64.151	ENSPVAG00000004596	XRN2	77	62.917	Pteropus_vampyrus
ENSEBUG00000016136	xrn2	100	67.883	ENSPNYG00000001765	xrn2	99	64.991	Pundamilia_nyererei
ENSEBUG00000016136	xrn2	100	70.995	ENSPNAG00000010956	xrn2	83	70.995	Pygocentrus_nattereri
ENSEBUG00000016136	xrn2	100	71.498	ENSRNOG00000011785	Xrn2	84	71.618	Rattus_norvegicus
ENSEBUG00000016136	xrn2	100	71.273	ENSRBIG00000036193	XRN2	98	71.515	Rhinopithecus_bieti
ENSEBUG00000016136	xrn2	100	71.515	ENSRROG00000044400	XRN2	76	71.515	Rhinopithecus_roxellana
ENSEBUG00000016136	xrn2	81	50.864	YOR048C	RAT1	65	51.748	Saccharomyces_cerevisiae
ENSEBUG00000016136	xrn2	100	71.636	ENSSBOG00000021014	XRN2	84	71.636	Saimiri_boliviensis_boliviensis
ENSEBUG00000016136	xrn2	100	69.915	ENSSFOG00015001091	xrn2	84	69.915	Scleropages_formosus
ENSEBUG00000016136	xrn2	100	68.039	ENSSMAG00000007834	xrn2	82	68.287	Scophthalmus_maximus
ENSEBUG00000016136	xrn2	100	67.191	ENSSDUG00000012802	xrn2	93	67.191	Seriola_dumerili
ENSEBUG00000016136	xrn2	100	68.568	ENSSLDG00000021273	xrn2	91	68.568	Seriola_lalandi_dorsalis
ENSEBUG00000016136	xrn2	60	92.000	ENSSARG00000005859	-	54	92.000	Sorex_araneus
ENSEBUG00000016136	xrn2	100	68.242	ENSSPUG00000005485	XRN2	83	68.242	Sphenodon_punctatus
ENSEBUG00000016136	xrn2	100	68.856	ENSSPAG00000016027	xrn2	83	68.856	Stegastes_partitus
ENSEBUG00000016136	xrn2	100	70.303	ENSSSCG00000007109	XRN2	84	70.303	Sus_scrofa
ENSEBUG00000016136	xrn2	100	69.444	ENSTGUG00000007535	XRN2	85	69.444	Taeniopygia_guttata
ENSEBUG00000016136	xrn2	100	68.978	ENSTRUG00000015489	xrn2	82	68.978	Takifugu_rubripes
ENSEBUG00000016136	xrn2	100	68.689	ENSTNIG00000010712	xrn2	84	68.689	Tetraodon_nigroviridis
ENSEBUG00000016136	xrn2	100	70.303	ENSTBEG00000004119	XRN2	84	71.273	Tupaia_belangeri
ENSEBUG00000016136	xrn2	91	74.907	ENSTTRG00000009087	XRN2	77	73.830	Tursiops_truncatus
ENSEBUG00000016136	xrn2	91	82.732	ENSUAMG00000024634	XRN2	90	83.495	Ursus_americanus
ENSEBUG00000016136	xrn2	99	72.102	ENSUMAG00000004012	XRN2	80	72.102	Ursus_maritimus
ENSEBUG00000016136	xrn2	79	81.230	ENSVPAG00000010694	XRN2	70	80.374	Vicugna_pacos
ENSEBUG00000016136	xrn2	100	71.515	ENSVVUG00000012178	XRN2	84	71.515	Vulpes_vulpes
ENSEBUG00000016136	xrn2	100	69.175	ENSXETG00000023501	xrn2	85	69.175	Xenopus_tropicalis
ENSEBUG00000016136	xrn2	100	68.894	ENSXMAG00000000242	xrn2	94	75.952	Xiphophorus_maculatus