EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000016173 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 31636 bases
Position: chrFYBX02009879.1:1309335-1340970
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000026270	RRM_1	PF00076.22	1.4e-59	1	4
ENSEBUP00000026270	RRM_1	PF00076.22	1.4e-59	2	4
ENSEBUP00000026270	RRM_1	PF00076.22	1.4e-59	3	4
ENSEBUP00000026270	RRM_1	PF00076.22	1.4e-59	4	4
ENSEBUP00000026251	RRM_1	PF00076.22	1.6e-59	1	4
ENSEBUP00000026251	RRM_1	PF00076.22	1.6e-59	2	4
ENSEBUP00000026251	RRM_1	PF00076.22	1.6e-59	3	4
ENSEBUP00000026251	RRM_1	PF00076.22	1.6e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000026828	-	7234	-	ENSEBUP00000026251	776 (aa)	-	-
ENSEBUT00000026846	-	7189	-	ENSEBUP00000026270	761 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000016173's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000016173's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000016173	ncl	55	35.780	ENSAPOG00000014534	-	69	36.098	Acanthochromis_polyacanthus
ENSEBUG00000016173	ncl	50	48.223	ENSAPOG00000023888	ncl	67	46.825	Acanthochromis_polyacanthus
ENSEBUG00000016173	ncl	51	48.507	ENSAOCG00000003133	ncl	68	46.640	Amphiprion_ocellaris
ENSEBUG00000016173	ncl	51	35.941	ENSAOCG00000014792	-	63	36.000	Amphiprion_ocellaris
ENSEBUG00000016173	ncl	51	35.941	ENSAPEG00000013612	-	63	36.000	Amphiprion_percula
ENSEBUG00000016173	ncl	50	48.731	ENSAPEG00000002769	ncl	67	47.129	Amphiprion_percula
ENSEBUG00000016173	ncl	66	36.047	ENSATEG00000019862	-	82	37.626	Anabas_testudineus
ENSEBUG00000016173	ncl	63	44.941	ENSAPLG00000012897	-	78	48.276	Anas_platyrhynchos
ENSEBUG00000016173	ncl	56	43.341	ENSAMXG00000001647	ncl	85	47.077	Astyanax_mexicanus
ENSEBUG00000016173	ncl	56	35.248	ENSCHIG00000012665	-	59	35.236	Capra_hircus
ENSEBUG00000016173	ncl	62	46.437	ENSCSEG00000015089	ncl	82	47.253	Cynoglossus_semilaevis
ENSEBUG00000016173	ncl	72	45.895	ENSDARG00000002710	ncl	84	50.733	Danio_rerio
ENSEBUG00000016173	ncl	55	45.521	ENSELUG00000006033	ncl	80	45.322	Esox_lucius
ENSEBUG00000016173	ncl	56	45.455	ENSFALG00000007592	-	58	47.700	Ficedula_albicollis
ENSEBUG00000016173	ncl	55	44.651	ENSFHEG00000018000	ncl	87	45.957	Fundulus_heteroclitus
ENSEBUG00000016173	ncl	67	46.565	ENSGMOG00000001341	ncl	67	46.469	Gadus_morhua
ENSEBUG00000016173	ncl	56	48.276	ENSGAFG00000015375	ncl	68	45.872	Gambusia_affinis
ENSEBUG00000016173	ncl	60	48.872	ENSGACG00000008970	ncl	68	47.032	Gasterosteus_aculeatus
ENSEBUG00000016173	ncl	56	43.287	ENSHBUG00000006869	ncl	69	48.297	Haplochromis_burtoni
ENSEBUG00000016173	ncl	56	46.420	ENSHCOG00000010234	ncl	78	44.828	Hippocampus_comes
ENSEBUG00000016173	ncl	55	48.492	ENSLBEG00000019073	ncl	65	48.559	Labrus_bergylta
ENSEBUG00000016173	ncl	50	35.065	ENSLBEG00000014278	-	84	35.580	Labrus_bergylta
ENSEBUG00000016173	ncl	52	35.661	ENSLBEG00000007915	-	68	35.338	Labrus_bergylta
ENSEBUG00000016173	ncl	58	40.444	ENSLACG00000022167	-	84	41.320	Latimeria_chalumnae
ENSEBUG00000016173	ncl	61	47.890	ENSLACG00000009328	ncl	88	49.339	Latimeria_chalumnae
ENSEBUG00000016173	ncl	63	33.198	ENSMAMG00000003479	-	72	35.500	Mastacembelus_armatus
ENSEBUG00000016173	ncl	55	45.139	ENSMGAG00000008147	-	88	47.980	Meleagris_gallopavo
ENSEBUG00000016173	ncl	54	46.047	ENSMALG00000014827	ncl	75	44.195	Monopterus_albus
ENSEBUG00000016173	ncl	56	43.287	ENSONIG00000012508	ncl	79	48.884	Oreochromis_niloticus
ENSEBUG00000016173	ncl	55	43.488	ENSOANG00000008732	-	63	46.154	Ornithorhynchus_anatinus
ENSEBUG00000016173	ncl	55	49.318	ENSORLG00000007055	ncl	65	48.089	Oryzias_latipes
ENSEBUG00000016173	ncl	53	33.253	ENSORLG00000004645	-	84	33.842	Oryzias_latipes
ENSEBUG00000016173	ncl	55	33.103	ENSORLG00020003497	-	71	35.230	Oryzias_latipes_hni
ENSEBUG00000016173	ncl	57	49.318	ENSORLG00020017943	ncl	65	48.089	Oryzias_latipes_hni
ENSEBUG00000016173	ncl	53	31.754	ENSORLG00015006613	-	78	34.351	Oryzias_latipes_hsok
ENSEBUG00000016173	ncl	50	48.303	ENSORLG00015013815	ncl	90	51.163	Oryzias_latipes_hsok
ENSEBUG00000016173	ncl	53	32.843	ENSOMEG00000015864	-	86	32.918	Oryzias_melastigma
ENSEBUG00000016173	ncl	55	46.172	ENSPKIG00000002604	ncl	78	43.234	Paramormyrops_kingsleyae
ENSEBUG00000016173	ncl	55	45.176	ENSPMGG00000004709	ncl	89	44.211	Periophthalmus_magnuspinnatus
ENSEBUG00000016173	ncl	56	45.161	ENSPNAG00000006192	ncl	76	44.218	Pygocentrus_nattereri
ENSEBUG00000016173	ncl	63	43.316	ENSSHAG00000002702	-	61	43.367	Sarcophilus_harrisii
ENSEBUG00000016173	ncl	50	48.969	ENSSFOG00015008583	ncl	78	47.903	Scleropages_formosus
ENSEBUG00000016173	ncl	52	35.246	ENSSFOG00015013153	-	81	36.190	Scleropages_formosus
ENSEBUG00000016173	ncl	53	37.101	ENSSMAG00000007582	-	66	36.855	Scophthalmus_maximus
ENSEBUG00000016173	ncl	65	35.747	ENSSDUG00000010922	-	73	36.341	Seriola_dumerili
ENSEBUG00000016173	ncl	50	48.586	ENSSDUG00000006128	ncl	89	48.768	Seriola_dumerili
ENSEBUG00000016173	ncl	56	36.092	ENSSLDG00000015784	-	67	36.683	Seriola_lalandi_dorsalis
ENSEBUG00000016173	ncl	58	46.593	ENSSLDG00000002012	ncl	76	44.728	Seriola_lalandi_dorsalis
ENSEBUG00000016173	ncl	57	35.491	ENSSPAG00000001859	-	63	37.343	Stegastes_partitus
ENSEBUG00000016173	ncl	55	47.018	ENSTRUG00000008185	ncl	65	47.577	Takifugu_rubripes
ENSEBUG00000016173	ncl	52	33.014	ENSXCOG00000007369	-	91	34.197	Xiphophorus_couchianus
ENSEBUG00000016173	ncl	50	36.095	ENSXCOG00000003524	ncl	92	37.299	Xiphophorus_couchianus