EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000016247 (Gene tree)
Gene ID: -
Gene Symbol: synj1
Alias: fb02f11|fi15a11|no optokinetic response c|nrc|slacker|slak|wu:fb02f11|wu:fi15a11
Full Name: synaptojanin 1
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 34824 bases
Position: chrFYBX02010291.1:905270-940093
Accession: ZDB-GENE-030131-9180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000026390	Exo_endo_phos	PF03372.23	1.2e-15	1	1
ENSEBUP00000026411	Exo_endo_phos	PF03372.23	1.7e-15	1	1
ENSEBUP00000026375	Exo_endo_phos	PF03372.23	7e-10	1	1
ENSEBUP00000026375	DUF1866	PF08952.11	2.2e-22	1	1
ENSEBUP00000026390	DUF1866	PF08952.11	2.4e-22	1	1
ENSEBUP00000026411	DUF1866	PF08952.11	2.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000026952	-	3200	-	ENSEBUP00000026375	828 (aa)	-	-
ENSEBUT00000026987	-	3129	-	ENSEBUP00000026411	945 (aa)	-	-
ENSEBUT00000026966	-	3151	-	ENSEBUP00000026390	803 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000016247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000016247's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000016247	synj1	98	47.129	ENSEASG00005006287	SYNJ1	55	60.816	Equus_asinus_asinus
ENSEBUG00000016247	synj1	98	47.689	ENSNLEG00000003734	SYNJ1	54	57.653	Nomascus_leucogenys
ENSEBUG00000016247	synj1	77	55.102	ENSOARG00000013414	SYNJ1	51	48.144	Ovis_aries
ENSEBUG00000016247	synj1	72	56.559	ENSPFOG00000016886	synj1	56	56.559	Poecilia_formosa
ENSEBUG00000016247	synj1	72	55.877	ENSPLAG00000017559	synj1	57	46.903	Poecilia_latipinna
ENSEBUG00000016247	synj1	98	49.633	ENSUAMG00000018606	SYNJ1	53	61.649	Ursus_americanus
ENSEBUG00000016247	synj1	80	54.656	ENSUMAG00000018419	SYNJ1	68	61.649	Ursus_maritimus