EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSEBUG00000016299 (Gene tree)
Gene ID: -
Gene Symbol: lsm12a
Alias: zgc:85812
Full Name: LSM12 homolog a
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Plus strand
Length: 209259 bases
Position: chrFYBX02010366.1:1435787-1645045
Accession: ZDB-GENE-040516-12
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000026474	AD	PF09793.9	4.1e-24	1	1
ENSEBUP00000026470	AD	PF09793.9	5.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000027050	-	4412	-	ENSEBUP00000026474	179 (aa)	-	-
ENSEBUT00000027046	-	1172	-	ENSEBUP00000026470	220 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000016299's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000016299's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000016299	lsm12a	92	63.415	ENSG00000161654	LSM12	84	63.415	Homo_sapiens
ENSEBUG00000016299	lsm12a	92	67.665	ENSAPOG00000007907	lsm12b	85	67.665	Acanthochromis_polyacanthus
ENSEBUG00000016299	lsm12a	92	61.677	ENSAMEG00000018321	LSM12	84	61.677	Ailuropoda_melanoleuca
ENSEBUG00000016299	lsm12a	92	65.868	ENSACIG00000008538	lsm12b	85	65.868	Amphilophus_citrinellus
ENSEBUG00000016299	lsm12a	92	67.066	ENSAOCG00000021847	lsm12b	75	67.066	Amphiprion_ocellaris
ENSEBUG00000016299	lsm12a	93	66.864	ENSAPEG00000002252	lsm12b	90	66.864	Amphiprion_percula
ENSEBUG00000016299	lsm12a	92	67.665	ENSATEG00000005705	lsm12b	85	67.665	Anabas_testudineus
ENSEBUG00000016299	lsm12a	92	63.030	ENSACAG00000004618	LSM12	85	63.030	Anolis_carolinensis
ENSEBUG00000016299	lsm12a	92	63.415	ENSANAG00000029011	LSM12	84	63.415	Aotus_nancymaae
ENSEBUG00000016299	lsm12a	92	65.868	ENSACLG00000026332	lsm12b	85	65.868	Astatotilapia_calliptera
ENSEBUG00000016299	lsm12a	92	68.263	ENSAMXG00000032952	lsm12b	85	68.263	Astyanax_mexicanus
ENSEBUG00000016299	lsm12a	92	60.479	ENSAMXG00000036117	lsm12a	78	60.479	Astyanax_mexicanus
ENSEBUG00000016299	lsm12a	92	63.415	ENSBTAG00000016252	LSM12	84	63.415	Bos_taurus
ENSEBUG00000016299	lsm12a	92	63.415	ENSCJAG00000048480	LSM12	84	63.415	Callithrix_jacchus
ENSEBUG00000016299	lsm12a	92	63.415	ENSCAFG00000014379	LSM12	77	63.415	Canis_familiaris
ENSEBUG00000016299	lsm12a	92	63.415	ENSCAFG00020012173	LSM12	84	63.415	Canis_lupus_dingo
ENSEBUG00000016299	lsm12a	92	63.415	ENSCHIG00000018175	LSM12	84	63.415	Capra_hircus
ENSEBUG00000016299	lsm12a	92	63.415	ENSTSYG00000036361	LSM12	84	63.415	Carlito_syrichta
ENSEBUG00000016299	lsm12a	74	59.398	ENSCAPG00000009647	LSM12	73	59.398	Cavia_aperea
ENSEBUG00000016299	lsm12a	92	62.805	ENSCPOG00000012860	LSM12	84	62.805	Cavia_porcellus
ENSEBUG00000016299	lsm12a	92	63.415	ENSCCAG00000032905	LSM12	84	63.415	Cebus_capucinus
ENSEBUG00000016299	lsm12a	92	63.415	ENSCATG00000030577	-	84	63.415	Cercocebus_atys
ENSEBUG00000016299	lsm12a	92	63.415	ENSCLAG00000015759	LSM12	84	63.415	Chinchilla_lanigera
ENSEBUG00000016299	lsm12a	92	63.415	ENSCSAG00000003486	LSM12	84	63.415	Chlorocebus_sabaeus
ENSEBUG00000016299	lsm12a	92	64.242	ENSCPBG00000027105	LSM12	85	64.242	Chrysemys_picta_bellii
ENSEBUG00000016299	lsm12a	92	63.415	ENSCANG00000043328	LSM12	84	63.415	Colobus_angolensis_palliatus
ENSEBUG00000016299	lsm12a	92	63.415	ENSCGRG00001002094	Lsm12	84	63.415	Cricetulus_griseus_chok1gshd
ENSEBUG00000016299	lsm12a	81	55.862	ENSCGRG00000004316	Lsm12	82	55.862	Cricetulus_griseus_crigri
ENSEBUG00000016299	lsm12a	92	65.868	ENSCSEG00000008434	lsm12b	85	65.868	Cynoglossus_semilaevis
ENSEBUG00000016299	lsm12a	92	67.066	ENSCVAG00000008755	lsm12b	85	67.066	Cyprinodon_variegatus
ENSEBUG00000016299	lsm12a	92	64.671	ENSDARG00000028848	lsm12a	85	64.671	Danio_rerio
ENSEBUG00000016299	lsm12a	92	67.066	ENSDARG00000109510	lsm12b	85	67.066	Danio_rerio
ENSEBUG00000016299	lsm12a	92	63.415	ENSDNOG00000002418	LSM12	77	63.415	Dasypus_novemcinctus
ENSEBUG00000016299	lsm12a	92	63.415	ENSDORG00000016381	Lsm12	84	63.415	Dipodomys_ordii
ENSEBUG00000016299	lsm12a	93	34.706	FBgn0030364	Lsm12	87	34.921	Drosophila_melanogaster
ENSEBUG00000016299	lsm12a	87	32.544	FBgn0036057	CG14164	99	31.551	Drosophila_melanogaster
ENSEBUG00000016299	lsm12a	80	58.333	ENSETEG00000011012	-	82	58.333	Echinops_telfairi
ENSEBUG00000016299	lsm12a	92	64.024	ENSETEG00000008374	LSM12	84	64.024	Echinops_telfairi
ENSEBUG00000016299	lsm12a	92	63.415	ENSEASG00005010155	LSM12	84	63.415	Equus_asinus_asinus
ENSEBUG00000016299	lsm12a	92	63.636	ENSECAG00000009071	LSM12	84	63.415	Equus_caballus
ENSEBUG00000016299	lsm12a	69	62.097	ENSEEUG00000002419	-	81	62.097	Erinaceus_europaeus
ENSEBUG00000016299	lsm12a	92	65.269	ENSELUG00000015538	lsm12b	85	61.078	Esox_lucius
ENSEBUG00000016299	lsm12a	92	65.868	ENSELUG00000000256	-	85	65.868	Esox_lucius
ENSEBUG00000016299	lsm12a	92	63.415	ENSFCAG00000037021	LSM12	84	63.415	Felis_catus
ENSEBUG00000016299	lsm12a	66	60.504	ENSFDAG00000008954	LSM12	70	60.504	Fukomys_damarensis
ENSEBUG00000016299	lsm12a	92	65.868	ENSFHEG00000019913	lsm12b	85	65.868	Fundulus_heteroclitus
ENSEBUG00000016299	lsm12a	72	65.116	ENSGMOG00000015449	lsm12b	82	65.116	Gadus_morhua
ENSEBUG00000016299	lsm12a	72	60.156	ENSGALG00000039803	LSM12	84	60.156	Gallus_gallus
ENSEBUG00000016299	lsm12a	92	66.467	ENSGAFG00000011829	lsm12b	85	66.467	Gambusia_affinis
ENSEBUG00000016299	lsm12a	72	64.341	ENSGACG00000003428	lsm12b	82	64.341	Gasterosteus_aculeatus
ENSEBUG00000016299	lsm12a	92	64.242	ENSGAGG00000021965	LSM12	85	64.242	Gopherus_agassizii
ENSEBUG00000016299	lsm12a	92	63.415	ENSGGOG00000010589	-	84	63.415	Gorilla_gorilla
ENSEBUG00000016299	lsm12a	93	66.071	ENSHBUG00000007667	lsm12b	74	66.071	Haplochromis_burtoni
ENSEBUG00000016299	lsm12a	92	63.415	ENSHGLG00000011411	LSM12	84	63.415	Heterocephalus_glaber_female
ENSEBUG00000016299	lsm12a	70	61.600	ENSHGLG00100000241	LSM12	66	61.600	Heterocephalus_glaber_male
ENSEBUG00000016299	lsm12a	92	66.467	ENSHCOG00000002094	lsm12b	85	66.467	Hippocampus_comes
ENSEBUG00000016299	lsm12a	92	62.874	ENSIPUG00000008936	lsm12a	86	62.874	Ictalurus_punctatus
ENSEBUG00000016299	lsm12a	92	67.066	ENSIPUG00000014800	lsm12	85	67.066	Ictalurus_punctatus
ENSEBUG00000016299	lsm12a	92	63.415	ENSSTOG00000007403	LSM12	84	63.415	Ictidomys_tridecemlineatus
ENSEBUG00000016299	lsm12a	88	53.459	ENSJJAG00000014652	-	100	51.497	Jaculus_jaculus
ENSEBUG00000016299	lsm12a	89	56.522	ENSJJAG00000011793	-	86	55.152	Jaculus_jaculus
ENSEBUG00000016299	lsm12a	92	62.805	ENSJJAG00000004364	-	84	62.805	Jaculus_jaculus
ENSEBUG00000016299	lsm12a	93	66.864	ENSKMAG00000007704	lsm12b	57	66.864	Kryptolebias_marmoratus
ENSEBUG00000016299	lsm12a	92	67.665	ENSLBEG00000027999	lsm12b	85	67.665	Labrus_bergylta
ENSEBUG00000016299	lsm12a	92	67.273	ENSLACG00000015981	LSM12	85	67.273	Latimeria_chalumnae
ENSEBUG00000016299	lsm12a	92	68.263	ENSLOCG00000013079	lsm12b	85	68.263	Lepisosteus_oculatus
ENSEBUG00000016299	lsm12a	92	63.415	ENSLAFG00000005202	LSM12	84	63.415	Loxodonta_africana
ENSEBUG00000016299	lsm12a	92	63.415	ENSMFAG00000031376	LSM12	84	63.415	Macaca_fascicularis
ENSEBUG00000016299	lsm12a	92	63.415	ENSMMUG00000006804	LSM12	84	63.415	Macaca_mulatta
ENSEBUG00000016299	lsm12a	92	63.415	ENSMNEG00000030594	-	84	63.415	Macaca_nemestrina
ENSEBUG00000016299	lsm12a	92	63.415	ENSMLEG00000039934	LSM12	84	63.415	Mandrillus_leucophaeus
ENSEBUG00000016299	lsm12a	92	67.066	ENSMAMG00000004279	lsm12b	85	67.066	Mastacembelus_armatus
ENSEBUG00000016299	lsm12a	92	65.868	ENSMZEG00005005754	lsm12b	85	65.868	Maylandia_zebra
ENSEBUG00000016299	lsm12a	92	63.415	ENSMICG00000037219	LSM12	84	63.415	Microcebus_murinus
ENSEBUG00000016299	lsm12a	92	53.049	ENSMOCG00000017015	-	72	53.049	Microtus_ochrogaster
ENSEBUG00000016299	lsm12a	92	63.415	ENSMOCG00000019878	-	84	63.415	Microtus_ochrogaster
ENSEBUG00000016299	lsm12a	92	66.467	ENSMMOG00000020848	lsm12b	85	66.467	Mola_mola
ENSEBUG00000016299	lsm12a	91	66.871	ENSMALG00000007578	lsm12b	83	66.871	Monopterus_albus
ENSEBUG00000016299	lsm12a	92	63.415	MGP_CAROLIEiJ_G0017241	Lsm12	84	63.415	Mus_caroli
ENSEBUG00000016299	lsm12a	92	63.415	ENSMUSG00000020922	Lsm12	84	63.415	Mus_musculus
ENSEBUG00000016299	lsm12a	92	57.459	MGP_PahariEiJ_G0018371	Lsm12	85	57.459	Mus_pahari
ENSEBUG00000016299	lsm12a	92	62.805	MGP_SPRETEiJ_G0018084	Lsm12	84	62.805	Mus_spretus
ENSEBUG00000016299	lsm12a	92	64.024	ENSMLUG00000006391	LSM12	84	64.024	Myotis_lucifugus
ENSEBUG00000016299	lsm12a	92	63.415	ENSNGAG00000001870	Lsm12	84	63.415	Nannospalax_galili
ENSEBUG00000016299	lsm12a	91	48.521	ENSNGAG00000015429	-	88	48.521	Nannospalax_galili
ENSEBUG00000016299	lsm12a	92	65.868	ENSNBRG00000006266	lsm12b	85	65.868	Neolamprologus_brichardi
ENSEBUG00000016299	lsm12a	92	63.415	ENSNLEG00000005580	-	84	63.415	Nomascus_leucogenys
ENSEBUG00000016299	lsm12a	91	62.577	ENSMEUG00000007501	-	99	62.577	Notamacropus_eugenii
ENSEBUG00000016299	lsm12a	92	63.415	ENSOPRG00000008552	LSM12	84	63.415	Ochotona_princeps
ENSEBUG00000016299	lsm12a	92	63.855	ENSODEG00000017998	-	85	63.855	Octodon_degus
ENSEBUG00000016299	lsm12a	92	58.182	ENSODEG00000007886	-	62	58.182	Octodon_degus
ENSEBUG00000016299	lsm12a	92	65.868	ENSONIG00000007933	lsm12b	85	65.868	Oreochromis_niloticus
ENSEBUG00000016299	lsm12a	92	59.639	ENSOCUG00000024823	-	86	59.639	Oryctolagus_cuniculus
ENSEBUG00000016299	lsm12a	92	61.677	ENSOCUG00000008566	-	84	61.677	Oryctolagus_cuniculus
ENSEBUG00000016299	lsm12a	92	60.843	ENSOCUG00000027889	-	86	60.843	Oryctolagus_cuniculus
ENSEBUG00000016299	lsm12a	92	60.241	ENSOCUG00000021254	-	86	60.241	Oryctolagus_cuniculus
ENSEBUG00000016299	lsm12a	92	67.665	ENSORLG00000011310	lsm12b	85	67.665	Oryzias_latipes
ENSEBUG00000016299	lsm12a	92	67.665	ENSORLG00020002060	lsm12b	78	67.665	Oryzias_latipes_hni
ENSEBUG00000016299	lsm12a	92	67.665	ENSORLG00015001647	lsm12b	78	67.665	Oryzias_latipes_hsok
ENSEBUG00000016299	lsm12a	92	67.066	ENSOMEG00000006184	lsm12b	78	67.066	Oryzias_melastigma
ENSEBUG00000016299	lsm12a	92	63.415	ENSOGAG00000010489	LSM12	84	63.415	Otolemur_garnettii
ENSEBUG00000016299	lsm12a	92	60.588	ENSOARG00000006589	LSM12	85	60.588	Ovis_aries
ENSEBUG00000016299	lsm12a	92	54.268	ENSPPAG00000034974	-	83	54.268	Pan_paniscus
ENSEBUG00000016299	lsm12a	92	63.415	ENSPPRG00000023420	LSM12	84	63.415	Panthera_pardus
ENSEBUG00000016299	lsm12a	72	60.156	ENSPTIG00000012704	-	68	60.156	Panthera_tigris_altaica
ENSEBUG00000016299	lsm12a	92	63.415	ENSPTRG00000009261	LSM12	84	63.415	Pan_troglodytes
ENSEBUG00000016299	lsm12a	92	63.415	ENSPANG00000021315	-	84	63.415	Papio_anubis
ENSEBUG00000016299	lsm12a	91	64.417	ENSPKIG00000017932	-	83	64.417	Paramormyrops_kingsleyae
ENSEBUG00000016299	lsm12a	92	67.066	ENSPKIG00000021058	lsm12b	92	66.667	Paramormyrops_kingsleyae
ENSEBUG00000016299	lsm12a	92	67.066	ENSPMGG00000021344	lsm12b	85	67.066	Periophthalmus_magnuspinnatus
ENSEBUG00000016299	lsm12a	92	63.415	ENSPEMG00000012199	Lsm12	84	63.415	Peromyscus_maniculatus_bairdii
ENSEBUG00000016299	lsm12a	92	72.121	ENSPMAG00000005461	lsm12a	95	72.121	Petromyzon_marinus
ENSEBUG00000016299	lsm12a	92	62.805	ENSPCIG00000020244	LSM12	84	62.805	Phascolarctos_cinereus
ENSEBUG00000016299	lsm12a	92	65.868	ENSPFOG00000015930	lsm12b	85	65.868	Poecilia_formosa
ENSEBUG00000016299	lsm12a	92	65.868	ENSPLAG00000021089	lsm12b	85	65.868	Poecilia_latipinna
ENSEBUG00000016299	lsm12a	92	65.868	ENSPMEG00000012961	lsm12b	85	65.868	Poecilia_mexicana
ENSEBUG00000016299	lsm12a	79	65.493	ENSPREG00000010236	lsm12b	79	65.493	Poecilia_reticulata
ENSEBUG00000016299	lsm12a	92	63.415	ENSPPYG00000008344	LSM12	84	63.415	Pongo_abelii
ENSEBUG00000016299	lsm12a	89	62.893	ENSPCAG00000008790	LSM12	100	62.893	Procavia_capensis
ENSEBUG00000016299	lsm12a	92	63.415	ENSPCOG00000027951	LSM12	84	63.415	Propithecus_coquereli
ENSEBUG00000016299	lsm12a	92	62.805	ENSPVAG00000013706	LSM12	84	62.805	Pteropus_vampyrus
ENSEBUG00000016299	lsm12a	92	65.868	ENSPNYG00000003386	lsm12b	85	65.868	Pundamilia_nyererei
ENSEBUG00000016299	lsm12a	92	63.473	ENSPNAG00000018435	lsm12a	95	59.358	Pygocentrus_nattereri
ENSEBUG00000016299	lsm12a	93	67.857	ENSPNAG00000004186	lsm12b	85	67.665	Pygocentrus_nattereri
ENSEBUG00000016299	lsm12a	92	63.415	ENSRNOG00000020894	Lsm12	84	63.415	Rattus_norvegicus
ENSEBUG00000016299	lsm12a	92	63.415	ENSRBIG00000027910	LSM12	84	63.415	Rhinopithecus_bieti
ENSEBUG00000016299	lsm12a	92	63.636	ENSRROG00000045530	-	95	63.636	Rhinopithecus_roxellana
ENSEBUG00000016299	lsm12a	92	63.415	ENSSBOG00000025310	LSM12	84	63.415	Saimiri_boliviensis_boliviensis
ENSEBUG00000016299	lsm12a	72	60.465	ENSSHAG00000014914	LSM12	82	60.465	Sarcophilus_harrisii
ENSEBUG00000016299	lsm12a	92	65.868	ENSSFOG00015009612	lsm12	85	65.868	Scleropages_formosus
ENSEBUG00000016299	lsm12a	92	66.467	ENSSFOG00015020392	lsm12a	85	66.467	Scleropages_formosus
ENSEBUG00000016299	lsm12a	92	66.467	ENSSMAG00000008089	lsm12b	85	66.467	Scophthalmus_maximus
ENSEBUG00000016299	lsm12a	92	67.066	ENSSDUG00000012711	lsm12b	85	67.066	Seriola_dumerili
ENSEBUG00000016299	lsm12a	92	67.066	ENSSLDG00000007404	lsm12b	85	67.066	Seriola_lalandi_dorsalis
ENSEBUG00000016299	lsm12a	72	59.375	ENSSARG00000005537	LSM12	84	59.375	Sorex_araneus
ENSEBUG00000016299	lsm12a	92	64.242	ENSSPUG00000011984	LSM12	85	64.242	Sphenodon_punctatus
ENSEBUG00000016299	lsm12a	93	66.864	ENSSPAG00000017058	lsm12b	85	67.066	Stegastes_partitus
ENSEBUG00000016299	lsm12a	92	63.415	ENSSSCG00000032394	LSM12	84	63.415	Sus_scrofa
ENSEBUG00000016299	lsm12a	92	66.467	ENSTRUG00000007121	lsm12b	85	66.467	Takifugu_rubripes
ENSEBUG00000016299	lsm12a	92	67.066	ENSTNIG00000014436	lsm12b	85	67.066	Tetraodon_nigroviridis
ENSEBUG00000016299	lsm12a	92	61.585	ENSTBEG00000012392	-	84	61.585	Tupaia_belangeri
ENSEBUG00000016299	lsm12a	92	63.415	ENSTBEG00000012523	-	84	63.415	Tupaia_belangeri
ENSEBUG00000016299	lsm12a	92	63.415	ENSTTRG00000010433	LSM12	84	63.415	Tursiops_truncatus
ENSEBUG00000016299	lsm12a	92	63.415	ENSUAMG00000006313	LSM12	84	63.415	Ursus_americanus
ENSEBUG00000016299	lsm12a	72	59.690	ENSUMAG00000012987	LSM12	73	59.690	Ursus_maritimus
ENSEBUG00000016299	lsm12a	92	57.927	ENSVPAG00000011145	LSM12	84	57.927	Vicugna_pacos
ENSEBUG00000016299	lsm12a	92	63.415	ENSVVUG00000017581	LSM12	84	63.415	Vulpes_vulpes
ENSEBUG00000016299	lsm12a	73	47.761	ENSXETG00000003371	lsm12	62	47.761	Xenopus_tropicalis
ENSEBUG00000016299	lsm12a	92	66.467	ENSXCOG00000003994	lsm12b	85	66.467	Xiphophorus_couchianus
ENSEBUG00000016299	lsm12a	92	66.467	ENSXMAG00000020950	lsm12b	85	66.467	Xiphophorus_maculatus