EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSEBUG00000016524 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Eptatretus_burgeri
Status: putative
Strand: Minus strand
Length: 18240 bases
Position: chrFYBX02009779.1:2623688-2641927
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSEBUP00000026888	ResIII	PF04851.15	5.9e-23	1	2
ENSEBUP00000026888	ResIII	PF04851.15	5.9e-23	2	2
ENSEBUP00000026846	ResIII	PF04851.15	6.3e-23	1	2
ENSEBUP00000026846	ResIII	PF04851.15	6.3e-23	2	2
ENSEBUP00000026860	ResIII	PF04851.15	6.3e-23	1	2
ENSEBUP00000026860	ResIII	PF04851.15	6.3e-23	2	2
ENSEBUP00000026877	ResIII	PF04851.15	6.3e-23	1	2
ENSEBUP00000026877	ResIII	PF04851.15	6.3e-23	2	2
ENSEBUP00000026922	ResIII	PF04851.15	6.3e-23	1	2
ENSEBUP00000026922	ResIII	PF04851.15	6.3e-23	2	2
ENSEBUP00000026888	DEAD	PF00270.29	3e-49	1	2
ENSEBUP00000026888	DEAD	PF00270.29	3e-49	2	2
ENSEBUP00000026846	DEAD	PF00270.29	3.2e-49	1	2
ENSEBUP00000026846	DEAD	PF00270.29	3.2e-49	2	2
ENSEBUP00000026860	DEAD	PF00270.29	3.2e-49	1	2
ENSEBUP00000026860	DEAD	PF00270.29	3.2e-49	2	2
ENSEBUP00000026877	DEAD	PF00270.29	3.2e-49	1	2
ENSEBUP00000026877	DEAD	PF00270.29	3.2e-49	2	2
ENSEBUP00000026922	DEAD	PF00270.29	3.2e-49	1	2
ENSEBUP00000026922	DEAD	PF00270.29	3.2e-49	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSEBUT00000027436	-	3515	-	ENSEBUP00000026860	1171 (aa)	-	-
ENSEBUT00000027498	-	3515	-	ENSEBUP00000026922	1171 (aa)	-	-
ENSEBUT00000027453	-	3515	-	ENSEBUP00000026877	1171 (aa)	-	-
ENSEBUT00000027464	-	3431	-	ENSEBUP00000026888	1143 (aa)	-	-
ENSEBUT00000027422	-	3515	-	ENSEBUP00000026846	1171 (aa)	-	-

Gene Model

Click here to download ENSEBUG00000016524's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSEBUG00000016524's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSEBUG00000016524	snrnp200	62	50.613	ENSEBUG00000009772	-	99	50.613
ENSEBUG00000016524	snrnp200	74	43.516	ENSEBUG00000007355	-	99	43.516
ENSEBUG00000016524	snrnp200	51	38.816	ENSEBUG00000006133	-	92	38.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSEBUG00000016524	snrnp200	95	81.256	ENSG00000144028	SNRNP200	83	81.256	Homo_sapiens
ENSEBUG00000016524	snrnp200	95	81.093	ENSAPOG00000010223	snrnp200	83	81.093	Acanthochromis_polyacanthus
ENSEBUG00000016524	snrnp200	95	81.345	ENSAMEG00000008996	SNRNP200	83	81.345	Ailuropoda_melanoleuca
ENSEBUG00000016524	snrnp200	95	80.538	ENSACIG00000001764	snrnp200	82	80.538	Amphilophus_citrinellus
ENSEBUG00000016524	snrnp200	95	81.093	ENSAOCG00000024593	snrnp200	84	81.093	Amphiprion_ocellaris
ENSEBUG00000016524	snrnp200	95	81.093	ENSAPEG00000012554	snrnp200	84	81.093	Amphiprion_percula
ENSEBUG00000016524	snrnp200	95	81.076	ENSATEG00000022522	snrnp200	83	81.076	Anabas_testudineus
ENSEBUG00000016524	snrnp200	95	81.345	ENSAPLG00000004313	SNRNP200	84	81.345	Anas_platyrhynchos
ENSEBUG00000016524	snrnp200	95	81.166	ENSACAG00000000434	SNRNP200	80	81.166	Anolis_carolinensis
ENSEBUG00000016524	snrnp200	95	80.893	ENSANAG00000036625	SNRNP200	85	80.893	Aotus_nancymaae
ENSEBUG00000016524	snrnp200	95	80.897	ENSACLG00000011188	snrnp200	83	80.897	Astatotilapia_calliptera
ENSEBUG00000016524	snrnp200	95	80.556	ENSAMXG00000005684	snrnp200	83	80.556	Astyanax_mexicanus
ENSEBUG00000016524	snrnp200	95	81.614	ENSBTAG00000000848	SNRNP200	83	81.614	Bos_taurus
ENSEBUG00000016524	snrnp200	95	81.256	ENSCJAG00000007514	SNRNP200	83	81.256	Callithrix_jacchus
ENSEBUG00000016524	snrnp200	95	80.538	ENSCAFG00020019979	SNRNP200	99	82.726	Canis_lupus_dingo
ENSEBUG00000016524	snrnp200	95	81.345	ENSCHIG00000020611	SNRNP200	83	81.345	Capra_hircus
ENSEBUG00000016524	snrnp200	95	81.345	ENSTSYG00000010467	SNRNP200	83	81.345	Carlito_syrichta
ENSEBUG00000016524	snrnp200	95	80.893	ENSCAPG00000017234	SNRNP200	84	80.893	Cavia_aperea
ENSEBUG00000016524	snrnp200	95	81.256	ENSCPOG00000006776	SNRNP200	83	81.256	Cavia_porcellus
ENSEBUG00000016524	snrnp200	95	81.256	ENSCCAG00000033962	SNRNP200	83	81.256	Cebus_capucinus
ENSEBUG00000016524	snrnp200	95	81.256	ENSCATG00000015790	SNRNP200	83	81.256	Cercocebus_atys
ENSEBUG00000016524	snrnp200	95	81.166	ENSCLAG00000004116	SNRNP200	83	81.166	Chinchilla_lanigera
ENSEBUG00000016524	snrnp200	95	81.256	ENSCSAG00000017369	SNRNP200	83	81.256	Chlorocebus_sabaeus
ENSEBUG00000016524	snrnp200	95	81.076	ENSCPBG00000022571	SNRNP200	96	73.888	Chrysemys_picta_bellii
ENSEBUG00000016524	snrnp200	95	75.492	ENSCING00000005082	-	80	75.492	Ciona_intestinalis
ENSEBUG00000016524	snrnp200	95	81.166	ENSCANG00000033932	SNRNP200	88	81.166	Colobus_angolensis_palliatus
ENSEBUG00000016524	snrnp200	95	81.256	ENSCGRG00001022610	Snrnp200	83	81.256	Cricetulus_griseus_chok1gshd
ENSEBUG00000016524	snrnp200	95	80.628	ENSCGRG00000016472	Snrnp200	83	80.628	Cricetulus_griseus_crigri
ENSEBUG00000016524	snrnp200	95	80.538	ENSCSEG00000016399	snrnp200	83	80.538	Cynoglossus_semilaevis
ENSEBUG00000016524	snrnp200	99	74.618	ENSCVAG00000017631	snrnp200	82	76.585	Cyprinodon_variegatus
ENSEBUG00000016524	snrnp200	95	80.179	ENSDARG00000077536	snrnp200	83	80.179	Danio_rerio
ENSEBUG00000016524	snrnp200	95	79.193	ENSDNOG00000011227	SNRNP200	83	79.193	Dasypus_novemcinctus
ENSEBUG00000016524	snrnp200	95	81.038	ENSDORG00000005861	Snrnp200	84	81.038	Dipodomys_ordii
ENSEBUG00000016524	snrnp200	95	75.426	FBgn0263599	l(3)72Ab	83	75.157	Drosophila_melanogaster
ENSEBUG00000016524	snrnp200	87	82.389	ENSETEG00000000162	SNRNP200	53	82.389	Echinops_telfairi
ENSEBUG00000016524	snrnp200	95	80.160	ENSEASG00005001884	SNRNP200	83	80.160	Equus_asinus_asinus
ENSEBUG00000016524	snrnp200	95	82.869	ENSECAG00000019675	SNRNP200	83	81.345	Equus_caballus
ENSEBUG00000016524	snrnp200	95	79.462	ENSEEUG00000012178	SNRNP200	83	79.462	Erinaceus_europaeus
ENSEBUG00000016524	snrnp200	95	81.166	ENSELUG00000018948	snrnp200	83	81.166	Esox_lucius
ENSEBUG00000016524	snrnp200	95	81.345	ENSFCAG00000010699	SNRNP200	83	81.345	Felis_catus
ENSEBUG00000016524	snrnp200	95	75.067	ENSFALG00000001368	-	82	75.067	Ficedula_albicollis
ENSEBUG00000016524	snrnp200	95	81.256	ENSFDAG00000004683	SNRNP200	83	81.256	Fukomys_damarensis
ENSEBUG00000016524	snrnp200	95	77.040	ENSFHEG00000003786	snrnp200	83	77.040	Fundulus_heteroclitus
ENSEBUG00000016524	snrnp200	95	79.301	ENSGMOG00000004881	snrnp200	83	79.301	Gadus_morhua
ENSEBUG00000016524	snrnp200	95	77.668	ENSGAFG00000010807	snrnp200	83	77.668	Gambusia_affinis
ENSEBUG00000016524	snrnp200	95	80.931	ENSGACG00000011474	snrnp200	83	80.931	Gasterosteus_aculeatus
ENSEBUG00000016524	snrnp200	95	81.076	ENSGAGG00000016069	SNRNP200	94	75.144	Gopherus_agassizii
ENSEBUG00000016524	snrnp200	95	81.256	ENSGGOG00000005174	SNRNP200	94	77.517	Gorilla_gorilla
ENSEBUG00000016524	snrnp200	95	77.848	ENSHBUG00000011322	snrnp200	83	77.848	Haplochromis_burtoni
ENSEBUG00000016524	snrnp200	95	81.256	ENSHGLG00000006654	SNRNP200	83	81.256	Heterocephalus_glaber_female
ENSEBUG00000016524	snrnp200	95	81.256	ENSHGLG00100018594	SNRNP200	83	81.256	Heterocephalus_glaber_male
ENSEBUG00000016524	snrnp200	95	81.345	ENSSTOG00000016351	SNRNP200	83	81.345	Ictidomys_tridecemlineatus
ENSEBUG00000016524	snrnp200	95	81.166	ENSJJAG00000023659	Snrnp200	83	81.166	Jaculus_jaculus
ENSEBUG00000016524	snrnp200	95	76.381	ENSKMAG00000003665	snrnp200	83	76.381	Kryptolebias_marmoratus
ENSEBUG00000016524	snrnp200	95	81.076	ENSLBEG00000021585	snrnp200	83	81.076	Labrus_bergylta
ENSEBUG00000016524	snrnp200	92	81.058	ENSLACG00000000226	SNRNP200	99	81.513	Latimeria_chalumnae
ENSEBUG00000016524	snrnp200	95	81.076	ENSLOCG00000015198	snrnp200	78	81.076	Lepisosteus_oculatus
ENSEBUG00000016524	snrnp200	95	81.435	ENSLAFG00000015626	SNRNP200	83	81.435	Loxodonta_africana
ENSEBUG00000016524	snrnp200	95	81.256	ENSMFAG00000040174	SNRNP200	98	77.517	Macaca_fascicularis
ENSEBUG00000016524	snrnp200	95	81.256	ENSMMUG00000023261	SNRNP200	83	81.256	Macaca_mulatta
ENSEBUG00000016524	snrnp200	95	81.256	ENSMNEG00000032398	SNRNP200	83	81.256	Macaca_nemestrina
ENSEBUG00000016524	snrnp200	95	81.256	ENSMLEG00000019083	SNRNP200	98	77.517	Mandrillus_leucophaeus
ENSEBUG00000016524	snrnp200	95	80.538	ENSMAMG00000007851	snrnp200	83	80.538	Mastacembelus_armatus
ENSEBUG00000016524	snrnp200	95	77.848	ENSMZEG00005010787	snrnp200	83	77.848	Maylandia_zebra
ENSEBUG00000016524	snrnp200	95	81.256	ENSMGAG00000001831	SNRNP200	86	81.256	Meleagris_gallopavo
ENSEBUG00000016524	snrnp200	95	81.256	ENSMAUG00000011825	Snrnp200	83	81.256	Mesocricetus_auratus
ENSEBUG00000016524	snrnp200	95	81.435	ENSMICG00000004710	SNRNP200	94	77.592	Microcebus_murinus
ENSEBUG00000016524	snrnp200	95	81.256	ENSMOCG00000011814	Snrnp200	85	81.256	Microtus_ochrogaster
ENSEBUG00000016524	snrnp200	95	80.556	ENSMMOG00000014167	snrnp200	83	80.556	Mola_mola
ENSEBUG00000016524	snrnp200	95	81.076	ENSMODG00000008475	SNRNP200	83	81.076	Monodelphis_domestica
ENSEBUG00000016524	snrnp200	95	80.359	ENSMALG00000001973	snrnp200	83	80.359	Monopterus_albus
ENSEBUG00000016524	snrnp200	95	81.256	MGP_CAROLIEiJ_G0024250	Snrnp200	83	81.256	Mus_caroli
ENSEBUG00000016524	snrnp200	95	81.256	ENSMUSG00000003660	Snrnp200	83	81.256	Mus_musculus
ENSEBUG00000016524	snrnp200	95	81.256	MGP_PahariEiJ_G0025695	Snrnp200	83	81.256	Mus_pahari
ENSEBUG00000016524	snrnp200	95	81.256	MGP_SPRETEiJ_G0025170	Snrnp200	83	81.256	Mus_spretus
ENSEBUG00000016524	snrnp200	95	81.435	ENSMPUG00000008949	SNRNP200	83	81.435	Mustela_putorius_furo
ENSEBUG00000016524	snrnp200	95	81.183	ENSMLUG00000010493	SNRNP200	83	81.183	Myotis_lucifugus
ENSEBUG00000016524	snrnp200	95	79.283	ENSMLUG00000027511	-	83	79.283	Myotis_lucifugus
ENSEBUG00000016524	snrnp200	95	81.256	ENSNGAG00000021993	Snrnp200	83	81.256	Nannospalax_galili
ENSEBUG00000016524	snrnp200	95	80.897	ENSNBRG00000017960	snrnp200	89	80.897	Neolamprologus_brichardi
ENSEBUG00000016524	snrnp200	95	75.199	ENSNLEG00000000025	SNRNP200	84	74.868	Nomascus_leucogenys
ENSEBUG00000016524	snrnp200	95	80.897	ENSMEUG00000010532	SNRNP200	57	80.897	Notamacropus_eugenii
ENSEBUG00000016524	snrnp200	95	79.731	ENSOPRG00000015464	SNRNP200	83	79.731	Ochotona_princeps
ENSEBUG00000016524	snrnp200	95	81.256	ENSODEG00000008366	SNRNP200	83	81.256	Octodon_degus
ENSEBUG00000016524	snrnp200	95	80.897	ENSONIG00000010714	snrnp200	83	80.897	Oreochromis_niloticus
ENSEBUG00000016524	snrnp200	95	81.345	ENSOCUG00000009864	SNRNP200	83	81.345	Oryctolagus_cuniculus
ENSEBUG00000016524	snrnp200	95	80.179	ENSORLG00000012286	snrnp200	86	80.179	Oryzias_latipes
ENSEBUG00000016524	snrnp200	95	80.359	ENSORLG00020004648	snrnp200	83	80.359	Oryzias_latipes_hni
ENSEBUG00000016524	snrnp200	95	80.269	ENSORLG00015019114	snrnp200	91	80.269	Oryzias_latipes_hsok
ENSEBUG00000016524	snrnp200	95	80.538	ENSOMEG00000011834	snrnp200	83	80.538	Oryzias_melastigma
ENSEBUG00000016524	snrnp200	95	81.345	ENSOGAG00000006879	SNRNP200	83	81.345	Otolemur_garnettii
ENSEBUG00000016524	snrnp200	95	80.735	ENSOARG00000013949	SNRNP200	83	80.735	Ovis_aries
ENSEBUG00000016524	snrnp200	95	81.256	ENSPPAG00000041559	SNRNP200	83	81.256	Pan_paniscus
ENSEBUG00000016524	snrnp200	95	81.345	ENSPPRG00000004435	SNRNP200	83	81.345	Panthera_pardus
ENSEBUG00000016524	snrnp200	95	81.345	ENSPTIG00000006380	SNRNP200	83	81.345	Panthera_tigris_altaica
ENSEBUG00000016524	snrnp200	95	81.256	ENSPTRG00000012230	SNRNP200	91	77.517	Pan_troglodytes
ENSEBUG00000016524	snrnp200	95	81.256	ENSPANG00000006017	SNRNP200	83	81.256	Papio_anubis
ENSEBUG00000016524	snrnp200	95	80.807	ENSPKIG00000014762	snrnp200	81	80.807	Paramormyrops_kingsleyae
ENSEBUG00000016524	snrnp200	95	80.000	ENSPSIG00000008580	SNRNP200	83	80.000	Pelodiscus_sinensis
ENSEBUG00000016524	snrnp200	95	81.076	ENSPCIG00000023050	SNRNP200	83	81.076	Phascolarctos_cinereus
ENSEBUG00000016524	snrnp200	95	81.183	ENSPFOG00000015110	snrnp200	83	81.183	Poecilia_formosa
ENSEBUG00000016524	snrnp200	95	81.166	ENSPLAG00000006711	snrnp200	83	81.166	Poecilia_latipinna
ENSEBUG00000016524	snrnp200	95	81.166	ENSPMEG00000021166	snrnp200	83	81.166	Poecilia_mexicana
ENSEBUG00000016524	snrnp200	95	80.897	ENSPREG00000008875	snrnp200	83	80.897	Poecilia_reticulata
ENSEBUG00000016524	snrnp200	95	81.256	ENSPPYG00000012068	SNRNP200	83	81.256	Pongo_abelii
ENSEBUG00000016524	snrnp200	91	89.103	ENSPCAG00000008536	SNRNP200	72	89.103	Procavia_capensis
ENSEBUG00000016524	snrnp200	95	81.345	ENSPCOG00000024608	SNRNP200	83	81.345	Propithecus_coquereli
ENSEBUG00000016524	snrnp200	92	78.689	ENSPVAG00000005860	SNRNP200	78	78.689	Pteropus_vampyrus
ENSEBUG00000016524	snrnp200	95	74.260	ENSPNYG00000017476	snrnp200	82	74.260	Pundamilia_nyererei
ENSEBUG00000016524	snrnp200	98	72.515	ENSPNAG00000010998	snrnp200	83	74.240	Pygocentrus_nattereri
ENSEBUG00000016524	snrnp200	95	81.256	ENSRNOG00000012157	Snrnp200	83	81.256	Rattus_norvegicus
ENSEBUG00000016524	snrnp200	95	81.256	ENSRBIG00000044690	-	90	77.517	Rhinopithecus_bieti
ENSEBUG00000016524	snrnp200	95	81.256	ENSRROG00000037952	-	83	81.256	Rhinopithecus_roxellana
ENSEBUG00000016524	snrnp200	95	81.256	ENSSBOG00000035471	SNRNP200	96	77.517	Saimiri_boliviensis_boliviensis
ENSEBUG00000016524	snrnp200	95	81.076	ENSSHAG00000000758	SNRNP200	86	81.076	Sarcophilus_harrisii
ENSEBUG00000016524	snrnp200	95	80.448	ENSSFOG00015018826	snrnp200	78	80.448	Scleropages_formosus
ENSEBUG00000016524	snrnp200	95	80.987	ENSSMAG00000005463	snrnp200	83	80.987	Scophthalmus_maximus
ENSEBUG00000016524	snrnp200	95	81.093	ENSSDUG00000021410	snrnp200	83	81.093	Seriola_dumerili
ENSEBUG00000016524	snrnp200	95	81.076	ENSSLDG00000010884	snrnp200	83	81.076	Seriola_lalandi_dorsalis
ENSEBUG00000016524	snrnp200	86	82.171	ENSSARG00000010728	SNRNP200	72	82.171	Sorex_araneus
ENSEBUG00000016524	snrnp200	95	81.256	ENSSPUG00000003726	-	83	81.256	Sphenodon_punctatus
ENSEBUG00000016524	snrnp200	95	81.272	ENSSPAG00000001842	snrnp200	83	81.272	Stegastes_partitus
ENSEBUG00000016524	snrnp200	95	81.256	ENSSSCG00000008127	SNRNP200	83	81.256	Sus_scrofa
ENSEBUG00000016524	snrnp200	95	72.525	ENSTGUG00000014475	-	79	72.525	Taeniopygia_guttata
ENSEBUG00000016524	snrnp200	95	80.807	ENSTRUG00000001307	snrnp200	83	80.807	Takifugu_rubripes
ENSEBUG00000016524	snrnp200	95	79.696	ENSTNIG00000004320	snrnp200	78	79.696	Tetraodon_nigroviridis
ENSEBUG00000016524	snrnp200	95	81.345	ENSTTRG00000004983	SNRNP200	83	81.345	Tursiops_truncatus
ENSEBUG00000016524	snrnp200	75	79.649	ENSUAMG00000008395	-	64	79.649	Ursus_americanus
ENSEBUG00000016524	snrnp200	95	81.345	ENSUMAG00000012385	SNRNP200	83	81.345	Ursus_maritimus
ENSEBUG00000016524	snrnp200	95	81.345	ENSVVUG00000026247	SNRNP200	93	74.381	Vulpes_vulpes
ENSEBUG00000016524	snrnp200	95	80.090	ENSXETG00000001243	snrnp200	83	80.090	Xenopus_tropicalis
ENSEBUG00000016524	snrnp200	95	81.166	ENSXMAG00000002058	snrnp200	82	81.166	Xiphophorus_maculatus