EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSECAG00000001389 (Gene tree)
Gene ID: 100057746
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Equus_caballus
Status: putative
Strand: Plus strand
Length: 25969 bases
Position: chr5:38538696-38564664
Accession: 23338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSECAP00000037441	EST1	PF10374.9	1.2e-23	1	1
ENSECAP00000002713	EST1	PF10374.9	6.1e-14	1	1
ENSECAP00000002713	EST1_DNA_bind	PF10373.9	2.5e-40	1	2
ENSECAP00000002713	EST1_DNA_bind	PF10373.9	2.5e-40	2	2
ENSECAP00000037441	EST1_DNA_bind	PF10373.9	2.9e-40	1	2
ENSECAP00000037441	EST1_DNA_bind	PF10373.9	2.9e-40	2	2
ENSECAP00000002713	PIN_4	PF13638.6	8.2e-05	1	1
ENSECAP00000037441	PIN_4	PF13638.6	8.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSECAT00000035270	-	4399	XM_005614864	ENSECAP00000037441	1016 (aa)	XP_005614921	UPI0001560CBD
ENSECAT00000003910	-	2961	-	ENSECAP00000002713	986 (aa)	-	F6X380

Gene Model

Click here to download ENSECAG00000001389's gene model file

Pathways

Pathway ID	Pathway Name	Source
ecb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSECAG00000001389's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSECAG00000001389	SMG5	100	97.047	ENSG00000198952	SMG5	100	97.047	Homo_sapiens
ENSECAG00000001389	SMG5	99	66.962	ENSAPOG00000019690	smg5	99	66.667	Acanthochromis_polyacanthus
ENSECAG00000001389	SMG5	98	93.051	ENSAMEG00000014458	SMG5	100	93.051	Ailuropoda_melanoleuca
ENSECAG00000001389	SMG5	99	65.355	ENSACIG00000001353	smg5	99	65.992	Amphilophus_citrinellus
ENSECAG00000001389	SMG5	98	64.916	ENSAOCG00000019483	smg5	93	67.008	Amphiprion_ocellaris
ENSECAG00000001389	SMG5	98	66.367	ENSAPEG00000022949	smg5	98	66.733	Amphiprion_percula
ENSECAG00000001389	SMG5	99	66.409	ENSATEG00000005348	smg5	99	67.248	Anabas_testudineus
ENSECAG00000001389	SMG5	98	78.829	ENSAPLG00000010263	SMG5	100	78.634	Anas_platyrhynchos
ENSECAG00000001389	SMG5	100	96.555	ENSANAG00000032899	SMG5	100	96.555	Aotus_nancymaae
ENSECAG00000001389	SMG5	99	65.154	ENSACLG00000009311	smg5	99	66.538	Astatotilapia_calliptera
ENSECAG00000001389	SMG5	100	95.965	ENSBTAG00000009435	SMG5	100	95.965	Bos_taurus
ENSECAG00000001389	SMG5	99	44.423	ENSBTAG00000021747	-	99	43.738	Bos_taurus
ENSECAG00000001389	SMG5	100	96.555	ENSCJAG00000005684	SMG5	100	96.555	Callithrix_jacchus
ENSECAG00000001389	SMG5	100	94.685	ENSCAFG00000016839	SMG5	100	94.685	Canis_familiaris
ENSECAG00000001389	SMG5	100	94.685	ENSCAFG00020006061	SMG5	100	94.685	Canis_lupus_dingo
ENSECAG00000001389	SMG5	99	44.763	ENSCHIG00000006323	-	99	44.324	Capra_hircus
ENSECAG00000001389	SMG5	100	95.965	ENSCHIG00000007709	SMG5	100	95.965	Capra_hircus
ENSECAG00000001389	SMG5	100	96.460	ENSTSYG00000004099	SMG5	100	96.460	Carlito_syrichta
ENSECAG00000001389	SMG5	97	75.941	ENSCAPG00000003631	SMG5	100	76.527	Cavia_aperea
ENSECAG00000001389	SMG5	100	95.187	ENSCPOG00000015696	SMG5	100	94.892	Cavia_porcellus
ENSECAG00000001389	SMG5	100	96.654	ENSCCAG00000027409	SMG5	100	96.654	Cebus_capucinus
ENSECAG00000001389	SMG5	100	97.047	ENSCATG00000030539	SMG5	100	97.047	Cercocebus_atys
ENSECAG00000001389	SMG5	100	95.678	ENSCLAG00000003983	SMG5	100	95.580	Chinchilla_lanigera
ENSECAG00000001389	SMG5	100	96.949	ENSCSAG00000002120	SMG5	100	96.949	Chlorocebus_sabaeus
ENSECAG00000001389	SMG5	54	93.066	ENSCHOG00000008741	-	57	93.066	Choloepus_hoffmanni
ENSECAG00000001389	SMG5	94	78.600	ENSCPBG00000025848	SMG5	100	78.398	Chrysemys_picta_bellii
ENSECAG00000001389	SMG5	93	34.881	ENSCING00000008706	-	99	35.216	Ciona_intestinalis
ENSECAG00000001389	SMG5	100	92.717	ENSCANG00000029208	SMG5	100	92.717	Colobus_angolensis_palliatus
ENSECAG00000001389	SMG5	54	46.549	ENSCGRG00001000584	-	98	46.499	Cricetulus_griseus_chok1gshd
ENSECAG00000001389	SMG5	100	92.043	ENSCGRG00001006336	Smg5	100	92.141	Cricetulus_griseus_chok1gshd
ENSECAG00000001389	SMG5	98	92.153	ENSCGRG00000005111	Smg5	100	92.246	Cricetulus_griseus_crigri
ENSECAG00000001389	SMG5	99	64.907	ENSCSEG00000014220	smg5	99	65.400	Cynoglossus_semilaevis
ENSECAG00000001389	SMG5	99	62.062	ENSCVAG00000000529	smg5	99	62.500	Cyprinodon_variegatus
ENSECAG00000001389	SMG5	100	91.535	ENSDNOG00000000051	SMG5	100	91.535	Dasypus_novemcinctus
ENSECAG00000001389	SMG5	92	37.037	ENSDNOG00000039862	-	100	36.038	Dasypus_novemcinctus
ENSECAG00000001389	SMG5	100	93.713	ENSDORG00000010382	Smg5	100	93.811	Dipodomys_ordii
ENSECAG00000001389	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSECAG00000001389	SMG5	82	97.087	ENSETEG00000010336	SMG5	83	97.087	Echinops_telfairi
ENSECAG00000001389	SMG5	90	46.482	ENSEBUG00000003739	smg5	98	46.858	Eptatretus_burgeri
ENSECAG00000001389	SMG5	100	99.803	ENSEASG00005019122	SMG5	100	99.803	Equus_asinus_asinus
ENSECAG00000001389	SMG5	72	98.847	ENSEEUG00000012690	SMG5	73	98.847	Erinaceus_europaeus
ENSECAG00000001389	SMG5	99	65.990	ENSELUG00000012585	smg5	99	66.087	Esox_lucius
ENSECAG00000001389	SMG5	100	94.193	ENSFCAG00000011783	SMG5	100	94.199	Felis_catus
ENSECAG00000001389	SMG5	58	82.304	ENSFALG00000001166	-	99	82.412	Ficedula_albicollis
ENSECAG00000001389	SMG5	98	92.951	ENSFDAG00000017388	SMG5	100	92.850	Fukomys_damarensis
ENSECAG00000001389	SMG5	97	61.329	ENSFHEG00000013939	smg5	95	67.732	Fundulus_heteroclitus
ENSECAG00000001389	SMG5	99	77.906	ENSGALG00000029918	-	100	77.419	Gallus_gallus
ENSECAG00000001389	SMG5	74	76.244	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSECAG00000001389	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.297	Gopherus_agassizii
ENSECAG00000001389	SMG5	100	96.949	ENSGGOG00000010932	SMG5	100	96.949	Gorilla_gorilla
ENSECAG00000001389	SMG5	99	65.063	ENSHBUG00000008654	smg5	99	65.779	Haplochromis_burtoni
ENSECAG00000001389	SMG5	100	92.633	ENSHGLG00000019152	SMG5	100	92.829	Heterocephalus_glaber_female
ENSECAG00000001389	SMG5	90	92.771	ENSHGLG00100015948	SMG5	99	92.990	Heterocephalus_glaber_male
ENSECAG00000001389	SMG5	86	73.839	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSECAG00000001389	SMG5	99	60.874	ENSIPUG00000006624	Smg5	99	62.000	Ictalurus_punctatus
ENSECAG00000001389	SMG5	100	96.362	ENSSTOG00000001780	SMG5	100	96.362	Ictidomys_tridecemlineatus
ENSECAG00000001389	SMG5	100	92.444	ENSJJAG00000022763	Smg5	100	92.149	Jaculus_jaculus
ENSECAG00000001389	SMG5	99	65.571	ENSLBEG00000002145	smg5	99	65.990	Labrus_bergylta
ENSECAG00000001389	SMG5	100	64.605	ENSLACG00000010521	SMG5	100	64.795	Latimeria_chalumnae
ENSECAG00000001389	SMG5	100	95.079	ENSLAFG00000006241	SMG5	100	95.079	Loxodonta_africana
ENSECAG00000001389	SMG5	100	96.949	ENSMFAG00000045357	SMG5	100	96.949	Macaca_fascicularis
ENSECAG00000001389	SMG5	100	96.949	ENSMMUG00000000090	SMG5	100	96.949	Macaca_mulatta
ENSECAG00000001389	SMG5	100	96.850	ENSMNEG00000044425	SMG5	100	96.850	Macaca_nemestrina
ENSECAG00000001389	SMG5	100	90.784	ENSMLEG00000041192	SMG5	100	90.784	Mandrillus_leucophaeus
ENSECAG00000001389	SMG5	99	60.839	ENSMAMG00000010683	smg5	100	60.208	Mastacembelus_armatus
ENSECAG00000001389	SMG5	65	58.904	ENSMZEG00005016543	smg5	100	59.697	Maylandia_zebra
ENSECAG00000001389	SMG5	99	64.395	ENSMZEG00005015815	smg5	99	65.072	Maylandia_zebra
ENSECAG00000001389	SMG5	100	90.864	ENSMAUG00000010381	Smg5	100	91.061	Mesocricetus_auratus
ENSECAG00000001389	SMG5	100	96.654	ENSMICG00000002257	SMG5	100	96.654	Microcebus_murinus
ENSECAG00000001389	SMG5	100	91.373	ENSMOCG00000016590	Smg5	100	90.686	Microtus_ochrogaster
ENSECAG00000001389	SMG5	99	58.670	ENSMMOG00000017199	smg5	99	59.083	Mola_mola
ENSECAG00000001389	SMG5	87	89.640	ENSMODG00000016901	SMG5	98	90.090	Monodelphis_domestica
ENSECAG00000001389	SMG5	97	34.592	ENSMODG00000004511	-	76	39.733	Monodelphis_domestica
ENSECAG00000001389	SMG5	91	36.829	ENSMODG00000004532	-	83	38.500	Monodelphis_domestica
ENSECAG00000001389	SMG5	78	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSECAG00000001389	SMG5	78	39.108	ENSMODG00000004735	-	86	39.200	Monodelphis_domestica
ENSECAG00000001389	SMG5	99	59.911	ENSMALG00000010375	smg5	55	54.619	Monopterus_albus
ENSECAG00000001389	SMG5	100	91.650	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSECAG00000001389	SMG5	100	91.847	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSECAG00000001389	SMG5	100	91.462	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSECAG00000001389	SMG5	100	91.650	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSECAG00000001389	SMG5	94	93.158	ENSMPUG00000004546	SMG5	100	93.158	Mustela_putorius_furo
ENSECAG00000001389	SMG5	100	94.716	ENSMLUG00000008518	SMG5	100	94.031	Myotis_lucifugus
ENSECAG00000001389	SMG5	100	94.100	ENSNGAG00000020706	Smg5	100	94.100	Nannospalax_galili
ENSECAG00000001389	SMG5	98	44.389	ENSNGAG00000012101	-	98	45.094	Nannospalax_galili
ENSECAG00000001389	SMG5	97	63.646	ENSNBRG00000004332	smg5	98	64.386	Neolamprologus_brichardi
ENSECAG00000001389	SMG5	100	96.654	ENSNLEG00000012439	SMG5	100	96.654	Nomascus_leucogenys
ENSECAG00000001389	SMG5	100	87.709	ENSMEUG00000012834	SMG5	100	86.824	Notamacropus_eugenii
ENSECAG00000001389	SMG5	100	94.193	ENSOPRG00000009152	SMG5	100	94.193	Ochotona_princeps
ENSECAG00000001389	SMG5	100	94.882	ENSODEG00000012237	SMG5	100	94.882	Octodon_degus
ENSECAG00000001389	SMG5	98	96.169	ENSOCUG00000012886	SMG5	100	96.169	Oryctolagus_cuniculus
ENSECAG00000001389	SMG5	90	40.717	ENSOCUG00000023338	-	99	39.957	Oryctolagus_cuniculus
ENSECAG00000001389	SMG5	99	64.327	ENSORLG00020013127	smg5	99	65.820	Oryzias_latipes_hni
ENSECAG00000001389	SMG5	99	64.626	ENSORLG00015019014	smg5	99	66.504	Oryzias_latipes_hsok
ENSECAG00000001389	SMG5	100	94.488	ENSOGAG00000004966	SMG5	100	94.488	Otolemur_garnettii
ENSECAG00000001389	SMG5	99	45.222	ENSOARG00000011963	-	99	44.379	Ovis_aries
ENSECAG00000001389	SMG5	100	96.063	ENSOARG00000005778	SMG5	100	96.063	Ovis_aries
ENSECAG00000001389	SMG5	100	97.047	ENSPPAG00000011996	SMG5	100	97.047	Pan_paniscus
ENSECAG00000001389	SMG5	98	94.153	ENSPPRG00000011901	SMG5	100	94.153	Panthera_pardus
ENSECAG00000001389	SMG5	96	87.258	ENSPTIG00000007892	SMG5	96	87.967	Panthera_tigris_altaica
ENSECAG00000001389	SMG5	100	97.244	ENSPTRG00000023925	SMG5	100	97.244	Pan_troglodytes
ENSECAG00000001389	SMG5	100	97.244	ENSPTRG00000049282	-	100	97.244	Pan_troglodytes
ENSECAG00000001389	SMG5	100	97.047	ENSPANG00000011201	SMG5	100	97.047	Papio_anubis
ENSECAG00000001389	SMG5	99	65.531	ENSPKIG00000009402	smg5	99	65.818	Paramormyrops_kingsleyae
ENSECAG00000001389	SMG5	98	80.278	ENSPSIG00000015198	SMG5	100	80.377	Pelodiscus_sinensis
ENSECAG00000001389	SMG5	99	60.534	ENSPMGG00000010465	smg5	99	59.889	Periophthalmus_magnuspinnatus
ENSECAG00000001389	SMG5	56	46.410	ENSPEMG00000010022	-	95	46.935	Peromyscus_maniculatus_bairdii
ENSECAG00000001389	SMG5	100	91.847	ENSPEMG00000001819	Smg5	100	91.945	Peromyscus_maniculatus_bairdii
ENSECAG00000001389	SMG5	99	49.565	ENSPMAG00000000410	smg5	99	50.048	Petromyzon_marinus
ENSECAG00000001389	SMG5	100	89.096	ENSPCIG00000018938	SMG5	100	89.489	Phascolarctos_cinereus
ENSECAG00000001389	SMG5	93	70.814	ENSPFOG00000010191	smg5	99	62.567	Poecilia_formosa
ENSECAG00000001389	SMG5	93	70.814	ENSPLAG00000009332	smg5	99	62.388	Poecilia_latipinna
ENSECAG00000001389	SMG5	99	66.315	ENSPMEG00000014105	smg5	99	65.966	Poecilia_mexicana
ENSECAG00000001389	SMG5	93	70.814	ENSPREG00000017713	smg5	99	62.298	Poecilia_reticulata
ENSECAG00000001389	SMG5	100	97.146	ENSPPYG00000000723	SMG5	100	97.146	Pongo_abelii
ENSECAG00000001389	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSECAG00000001389	SMG5	100	96.752	ENSPCOG00000004741	SMG5	100	96.752	Propithecus_coquereli
ENSECAG00000001389	SMG5	95	94.949	ENSPVAG00000016748	SMG5	92	94.949	Pteropus_vampyrus
ENSECAG00000001389	SMG5	99	59.789	ENSPNYG00000013397	smg5	99	59.167	Pundamilia_nyererei
ENSECAG00000001389	SMG5	100	91.945	ENSRNOG00000019590	Smg5	100	91.945	Rattus_norvegicus
ENSECAG00000001389	SMG5	100	96.752	ENSRBIG00000027428	SMG5	100	96.752	Rhinopithecus_bieti
ENSECAG00000001389	SMG5	100	96.654	ENSRROG00000030035	SMG5	100	96.654	Rhinopithecus_roxellana
ENSECAG00000001389	SMG5	100	96.850	ENSSBOG00000033339	SMG5	100	96.850	Saimiri_boliviensis_boliviensis
ENSECAG00000001389	SMG5	99	33.913	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSECAG00000001389	SMG5	86	39.895	ENSSHAG00000000561	-	86	39.895	Sarcophilus_harrisii
ENSECAG00000001389	SMG5	98	88.589	ENSSHAG00000014163	SMG5	100	88.989	Sarcophilus_harrisii
ENSECAG00000001389	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSECAG00000001389	SMG5	99	65.370	ENSSFOG00015024175	smg5	99	65.854	Scleropages_formosus
ENSECAG00000001389	SMG5	99	59.877	ENSSDUG00000007122	smg5	93	77.442	Seriola_dumerili
ENSECAG00000001389	SMG5	99	60.265	ENSSLDG00000011418	smg5	93	78.169	Seriola_lalandi_dorsalis
ENSECAG00000001389	SMG5	90	81.243	ENSSARG00000012484	SMG5	100	81.243	Sorex_araneus
ENSECAG00000001389	SMG5	94	78.116	ENSSPUG00000002260	SMG5	100	77.102	Sphenodon_punctatus
ENSECAG00000001389	SMG5	92	76.389	ENSSPAG00000014266	smg5	98	65.500	Stegastes_partitus
ENSECAG00000001389	SMG5	99	74.975	ENSSSCG00000039308	-	100	74.975	Sus_scrofa
ENSECAG00000001389	SMG5	53	37.431	ENSSSCG00000037182	-	99	35.489	Sus_scrofa
ENSECAG00000001389	SMG5	100	97.736	ENSSSCG00000006490	-	100	97.736	Sus_scrofa
ENSECAG00000001389	SMG5	99	80.514	ENSTGUG00000003748	-	100	80.273	Taeniopygia_guttata
ENSECAG00000001389	SMG5	99	64.286	ENSTRUG00000012580	smg5	99	64.258	Takifugu_rubripes
ENSECAG00000001389	SMG5	99	65.116	ENSTNIG00000010303	smg5	99	64.791	Tetraodon_nigroviridis
ENSECAG00000001389	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSECAG00000001389	SMG5	100	92.028	ENSTTRG00000001401	SMG5	100	92.028	Tursiops_truncatus
ENSECAG00000001389	SMG5	100	93.799	ENSUAMG00000013721	SMG5	100	93.799	Ursus_americanus
ENSECAG00000001389	SMG5	98	89.447	ENSUMAG00000018041	SMG5	97	89.447	Ursus_maritimus
ENSECAG00000001389	SMG5	98	87.185	ENSVPAG00000009446	SMG5	99	87.185	Vicugna_pacos
ENSECAG00000001389	SMG5	100	94.587	ENSVVUG00000005887	SMG5	100	94.587	Vulpes_vulpes
ENSECAG00000001389	SMG5	79	66.121	ENSXETG00000033791	SMG5	99	65.491	Xenopus_tropicalis
ENSECAG00000001389	SMG5	69	70.362	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSECAG00000001389	SMG5	99	65.184	ENSXMAG00000013499	smg5	99	65.601	Xiphophorus_maculatus